NO24G01130.1, NO24G01130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G01130.1
Unique Name	NO24G01130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1449
Alignment location	chr24:313488..316036 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:313488..316036 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G01130.1 vs.
Match: XP_005849140.1 (hypothetical protein CHLNCDRAFT_143748 [Chlorella variabilis]; EFN57038.1 hypothetical protein CHLNCDRAFT_143748 [Chlorella variabilis])

HSP 1 Score: 82.4 bits (202), Expect = 4.200e-12
Identity = 66/198 (33.33%), Postives = 84/198 (42.42%), Query Frame = 0

Query:   49 ISLLCRPRTAGRVE-EELVQARLVLVLDKTSYPSLPPAFSLPFTPGLGDDEVAQVHSRITNVWRGLYGEREGEEGKEEGEEEGVLGCLPLLEAATDALDELNQ-KVVCSICLMPLL------GREGGGEGGVMRTEGCYHCFHVGCLAEWW-------ARRER------------------ADREGRKEGGGGGVWGG 214
            ++L   PRT G  E E+ V  RLVL +    YPS PP   L    GLG+  +A+V + +      + GE +             LG   L E A + L   NQ +  C+ CL PLL      G  GGG G  +   GCYHC+H+ C A WW       ARRER                    RE   +G  GG  GG
Sbjct:   37 VTLAVAPRTRGGAEHEQFVAGRLVLAVGP-QYPSQPPDVHLSDAKGLGEQRLAEVQAALAAEAACMAGELQ-------------LG--HLCETAIELLTAANQPEGHCAFCLEPLLADHLPGGGGGGGAGSAVLRLGCYHCYHLACFAPWWQWQQRQLARRERQLWGEYKSMAPLKLQEEGIRREAAADGNDGGGGGG 218

The following BLAST results are available for this feature:

BLAST of NO24G01130.1 vs.

BLAST of NO24G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005849140.1	4.200e-12	33.33	hypothetical protein CHLNCDRAFT_143748 [Chlorella ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G01130	NO24G01130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01130.1	NO24G01130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01130.1.cds1	NO24G01130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds2	NO24G01130.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds3	NO24G01130.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds4	NO24G01130.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds5	NO24G01130.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds6	NO24G01130.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds7	NO24G01130.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01130.1.cds8	NO24G01130.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:313488..316036-
coding sequence from alignment at chr24:313488..316036-

mRNA sequence

>NO24G01130.1 ID=NO24G01130.1|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGAAAGACCTCGTCGAGATCTCC
CTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGGTTCA
AGCCCGACTGGTGCTAGTGCTGGATAAGACCAGCTATCCCTCCCTCCCTC
CCGCCTTCTCCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCC
CAGGTGCATTCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAG
GGAGGGCGAGGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCT
GCTTGCCTTTATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAA
AAAGTCGTGTGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGG
GGGGGAGGGAGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATG
TGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAG
GGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGAC
TCTGCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAGGAGGAGC
ACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGCCTTCCTC
CTCAGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTTCAAAAGGACCT
CTCGGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGCCATTAAATCCA
CTGGCACCAAAGTGCTTCAGACCCAGCGGGAGCTAGCAGAAGCAGAGGCG
GCGTGGCGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTG
TTGTGTGTGTCGGCGTCCTTTGCGACTAGTCGACATGCCTCCTCGCCTGG
TAGAGGCCATTGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGG
GAGGAGGGAGGGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTC
GGAGTCTGCCGGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAG
AGATGCGAGGGTACATTGAGGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA

protein sequence of NO24G01130.1

>NO24G01130.1-protein ID=NO24G01130.1-protein|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MNDAVATELELLRGIFYDDGLLIEERSSEEEEDGSGGGNGEKEKDLVEIS
LLCRPRTAGRVEEELVQARLVLVLDKTSYPSLPPAFSLPFTPGLGDDEVA
QVHSRITNVWRGLYGEREGEEGKEEGEEEGVLGCLPLLEAATDALDELNQ
KVVCSICLMPLLGREGGGEGGVMRTEGCYHCFHVGCLAEWWARRERADRE
GRKEGGGGGVWGGRVQTLQRLLARRRGEKEEEEHALCVCQSRLDEVAAFL
LSPDLDSEIRSAFQKDLSEEERRKRQLRLAIKSTGTKVLQTQRELAEAEA
AWREAEAAKGLQRAIPCCVCRRPLRLVDMPPRLVEAIEMLEGRARGDEGG
EEGGRKGGREEATLELSESAGLPPSLLSDREKQEMRGYIEGMSEESSAMV
SRLRALLEERGKKEKEREEEERGREGEREEANAEDSVETETRIAHEGGGG
QERERGEGSWGGWRRGGRGGRRGEEEAERKEE*

mRNA from alignment at chr24:313488..316036-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G01130.1 ID=NO24G01130.1|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2549bp|location=Sequence derived from alignment at chr24:313488..316036- (Nannochloropsis oceanica)
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGGCAAGGTTTTGTCCATCAGGG
GTCAACATTCCTTTTTATTTTACACTTACCACTCTTCATCCGCTATTTGC
TCCAGGGATCTCATACCCCCATCATCCGTTTACCCTCCCTTCCTCACTCT
CTCCTGCCTTTCCCTCTACCCAAGCAACCAAATCAAGATTTCCTTTATCT
GTCAATCACGCACCAAAAATCCCCTCCCTCCAATATTTCCTCTCTTCGTT
TCCCTCTCTCTCACTCCTCCTTCCCTCTTACAGAAAGACCTCGTCGAGAT
CTCCCTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGG
TTCAAGCCCGACTGGTGCTAGTGCTGGATAAGGTAAGGAGGGATGGAGGA
AGGAATGGATAGATGGAGGGAACGGGTGTTAGTGTGGACGTGCTTGCTGT
TTCAAGACGCATTCATTCCTCTCTTCTAATCTCCCCTTCTTCTTCCCTCC
CTCCCTCTCCCCCCCCTTCTCCTCCCTCCCTTCCTCCCTCCCGTCTGTCC
GGCCTCTCCATGCTCCCAGACCAGCTATCCCTCCCTCCCTCCCGCCTTCT
CCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCCCAGGTGCAT
TCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAGGGAGGGCGA
GGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCTGCTTGCCTT
TATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAAAAAGTCGTG
TGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGGGGGGGAGGG
AGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATGTGGGATGTC
TGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAGGGCAGAAAG
GAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGACTCTGCAGGT
GAGGAAGGAGGGAAGGAGGGAAGGAGGGAAGAAGGAAAGGAGCGTGGATG
TCGTCTGTGCCACCGCCTTGCATTCATGCACTTGCCCCCCTTTCTTCCCT
CTTCAACCAACCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAG
GAGGAGCACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGC
CTTCCTCCTCAGGTGCGATTCTCGTACTCCCTGCCCCCCCTTCCCCCTTG
CTATCACTCACGAGGACACGCCCCTCGTCCGCCCCCCTCCTCTCCCCCTC
CTTCCCTCCGTTCATTACTTCGCCCCCCCTCTTCCAGCCCTGACCTCGAC
AGCGAAATCCGCAGCGCCTTTCAAAAGGACCTCTCGGAGGAAGAGAGGCG
GAAACGACAGCTCCGTCTCGCCATTAAATCCACTGGCACCAAAGTGCTTC
AGGTACGCCCTCCCTCCCTCCCTCCCACCAGTCATTCTTGTCGCTCACCA
TCCACCCCTCCCTCCCTTTCTCCCTTCCTCTCTTTCTCCCGCCCTCCCTC
TCTCTCTCCCTCAGACCCAGCGGGAGCTAGCAGAAGCAGAGGCGGCGTGG
CGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTGTTGTGT
GTGTCGGCGTCCTTTGCGACTAGGTGAGTGACATGGCAATGCCGAGCCGC
ATAGGATGGGGGTGTCGTCGCCCTCTGCTCTCATAAAAAGGCTGCTAGCT
CCCTCCCTTCATCCCTCCCTCACTAAAGAACCATTCCCTCCGTTCCTCCC
TGCGTCCCTCCCTCTTAAGTCGACATGCCTCCTCGCCTGGTAGAGGCCAT
TGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGGGAGGAGGGAG
GGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTCGGAGTCTGCC
GGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAGAGATGCGAGG
GTACATTGAGGTGAGAAGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGG
GAGGGAAGGAGAAAGTTTTTTGGGGAGTGCAAAGCACATTCCACCGGCAT
GAACCTGACCATCATCCTTCCCACCTTGTCATCCTCCCTTCCTCTCTCTC
TCTTACTGCTTCTTTCACAGGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA

Coding sequence (CDS) from alignment at chr24:313488..316036-

>NO24G01130.1 ID=NO24G01130.1|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr24:313488..316036- (Nannochloropsis oceanica)
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGAAAGACCTCGTCGAGATCTCC
CTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGGTTCA
AGCCCGACTGGTGCTAGTGCTGGATAAGACCAGCTATCCCTCCCTCCCTC
CCGCCTTCTCCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCC
CAGGTGCATTCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAG
GGAGGGCGAGGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCT
GCTTGCCTTTATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAA
AAAGTCGTGTGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGG
GGGGGAGGGAGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATG
TGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAG
GGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGAC
TCTGCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAGGAGGAGC
ACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGCCTTCCTC
CTCAGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTTCAAAAGGACCT
CTCGGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGCCATTAAATCCA
CTGGCACCAAAGTGCTTCAGACCCAGCGGGAGCTAGCAGAAGCAGAGGCG
GCGTGGCGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTG
TTGTGTGTGTCGGCGTCCTTTGCGACTAGTCGACATGCCTCCTCGCCTGG
TAGAGGCCATTGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGG
GAGGAGGGAGGGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTC
GGAGTCTGCCGGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAG
AGATGCGAGGGTACATTGAGGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA

Synonyms

Publications