NO24G01130.1, NO24G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01130.1
Unique NameNO24G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1449
Alignment locationchr24:313488..316036 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:313488..316036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01130.1 vs.
Match: XP_005849140.1 (hypothetical protein CHLNCDRAFT_143748 [Chlorella variabilis]; EFN57038.1 hypothetical protein CHLNCDRAFT_143748 [Chlorella variabilis])

HSP 1 Score: 82.4 bits (202), Expect = 4.200e-12
Identity = 66/198 (33.33%), Postives = 84/198 (42.42%), Query Frame = 0 
Query:   49 ISLLCRPRTAGRVE-EELVQARLVLVLDKTSYPSLPPAFSLPFTPGLGDDEVAQVHSRITNVWRGLYGEREGEEGKEEGEEEGVLGCLPLLEAATDALDELNQ-KVVCSICLMPLL------GREGGGEGGVMRTEGCYHCFHVGCLAEWW-------ARRER------------------ADREGRKEGGGGGVWGG 214
            ++L   PRT G  E E+ V  RLVL +    YPS PP   L    GLG+  +A+V + +      + GE +             LG   L E A + L   NQ +  C+ CL PLL      G  GGG G  +   GCYHC+H+ C A WW       ARRER                    RE   +G  GG  GG
Sbjct:   37 VTLAVAPRTRGGAEHEQFVAGRLVLAVGP-QYPSQPPDVHLSDAKGLGEQRLAEVQAALAAEAACMAGELQ-------------LG--HLCETAIELLTAANQPEGHCAFCLEPLLADHLPGGGGGGGAGSAVLRLGCYHCYHLACFAPWWQWQQRQLARRERQLWGEYKSMAPLKLQEEGIRREAAADGNDGGGGGG 218
The following BLAST results are available for this feature:
BLAST of NO24G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceXP_005849140.1
Match NameE-valueIdentityDescription
XP_005849140.14.200e-1233.33hypothetical protein CHLNCDRAFT_143748 [Chlorella ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01130NO24G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01130.1NO24G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01130.1.cds1NO24G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds2NO24G01130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds3NO24G01130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds4NO24G01130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds5NO24G01130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds6NO24G01130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds7NO24G01130.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01130.1.cds8NO24G01130.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01130.1 ID=NO24G01130.1|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGAAAGACCTCGTCGAGATCTCC
CTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGGTTCA
AGCCCGACTGGTGCTAGTGCTGGATAAGACCAGCTATCCCTCCCTCCCTC
CCGCCTTCTCCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCC
CAGGTGCATTCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAG
GGAGGGCGAGGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCT
GCTTGCCTTTATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAA
AAAGTCGTGTGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGG
GGGGGAGGGAGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATG
TGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAG
GGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGAC
TCTGCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAGGAGGAGC
ACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGCCTTCCTC
CTCAGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTTCAAAAGGACCT
CTCGGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGCCATTAAATCCA
CTGGCACCAAAGTGCTTCAGACCCAGCGGGAGCTAGCAGAAGCAGAGGCG
GCGTGGCGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTG
TTGTGTGTGTCGGCGTCCTTTGCGACTAGTCGACATGCCTCCTCGCCTGG
TAGAGGCCATTGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGG
GAGGAGGGAGGGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTC
GGAGTCTGCCGGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAG
AGATGCGAGGGTACATTGAGGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA
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protein sequence of NO24G01130.1

>NO24G01130.1-protein ID=NO24G01130.1-protein|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MNDAVATELELLRGIFYDDGLLIEERSSEEEEDGSGGGNGEKEKDLVEIS
LLCRPRTAGRVEEELVQARLVLVLDKTSYPSLPPAFSLPFTPGLGDDEVA
QVHSRITNVWRGLYGEREGEEGKEEGEEEGVLGCLPLLEAATDALDELNQ
KVVCSICLMPLLGREGGGEGGVMRTEGCYHCFHVGCLAEWWARRERADRE
GRKEGGGGGVWGGRVQTLQRLLARRRGEKEEEEHALCVCQSRLDEVAAFL
LSPDLDSEIRSAFQKDLSEEERRKRQLRLAIKSTGTKVLQTQRELAEAEA
AWREAEAAKGLQRAIPCCVCRRPLRLVDMPPRLVEAIEMLEGRARGDEGG
EEGGRKGGREEATLELSESAGLPPSLLSDREKQEMRGYIEGMSEESSAMV
SRLRALLEERGKKEKEREEEERGREGEREEANAEDSVETETRIAHEGGGG
QERERGEGSWGGWRRGGRGGRRGEEEAERKEE*
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mRNA from alignment at chr24:313488..316036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01130.1 ID=NO24G01130.1|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2549bp|location=Sequence derived from alignment at chr24:313488..316036- (Nannochloropsis oceanica)
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGGCAAGGTTTTGTCCATCAGGG
GTCAACATTCCTTTTTATTTTACACTTACCACTCTTCATCCGCTATTTGC
TCCAGGGATCTCATACCCCCATCATCCGTTTACCCTCCCTTCCTCACTCT
CTCCTGCCTTTCCCTCTACCCAAGCAACCAAATCAAGATTTCCTTTATCT
GTCAATCACGCACCAAAAATCCCCTCCCTCCAATATTTCCTCTCTTCGTT
TCCCTCTCTCTCACTCCTCCTTCCCTCTTACAGAAAGACCTCGTCGAGAT
CTCCCTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGG
TTCAAGCCCGACTGGTGCTAGTGCTGGATAAGGTAAGGAGGGATGGAGGA
AGGAATGGATAGATGGAGGGAACGGGTGTTAGTGTGGACGTGCTTGCTGT
TTCAAGACGCATTCATTCCTCTCTTCTAATCTCCCCTTCTTCTTCCCTCC
CTCCCTCTCCCCCCCCTTCTCCTCCCTCCCTTCCTCCCTCCCGTCTGTCC
GGCCTCTCCATGCTCCCAGACCAGCTATCCCTCCCTCCCTCCCGCCTTCT
CCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCCCAGGTGCAT
TCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAGGGAGGGCGA
GGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCTGCTTGCCTT
TATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAAAAAGTCGTG
TGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGGGGGGGAGGG
AGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATGTGGGATGTC
TGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAGGGCAGAAAG
GAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGACTCTGCAGGT
GAGGAAGGAGGGAAGGAGGGAAGGAGGGAAGAAGGAAAGGAGCGTGGATG
TCGTCTGTGCCACCGCCTTGCATTCATGCACTTGCCCCCCTTTCTTCCCT
CTTCAACCAACCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAG
GAGGAGCACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGC
CTTCCTCCTCAGGTGCGATTCTCGTACTCCCTGCCCCCCCTTCCCCCTTG
CTATCACTCACGAGGACACGCCCCTCGTCCGCCCCCCTCCTCTCCCCCTC
CTTCCCTCCGTTCATTACTTCGCCCCCCCTCTTCCAGCCCTGACCTCGAC
AGCGAAATCCGCAGCGCCTTTCAAAAGGACCTCTCGGAGGAAGAGAGGCG
GAAACGACAGCTCCGTCTCGCCATTAAATCCACTGGCACCAAAGTGCTTC
AGGTACGCCCTCCCTCCCTCCCTCCCACCAGTCATTCTTGTCGCTCACCA
TCCACCCCTCCCTCCCTTTCTCCCTTCCTCTCTTTCTCCCGCCCTCCCTC
TCTCTCTCCCTCAGACCCAGCGGGAGCTAGCAGAAGCAGAGGCGGCGTGG
CGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTGTTGTGT
GTGTCGGCGTCCTTTGCGACTAGGTGAGTGACATGGCAATGCCGAGCCGC
ATAGGATGGGGGTGTCGTCGCCCTCTGCTCTCATAAAAAGGCTGCTAGCT
CCCTCCCTTCATCCCTCCCTCACTAAAGAACCATTCCCTCCGTTCCTCCC
TGCGTCCCTCCCTCTTAAGTCGACATGCCTCCTCGCCTGGTAGAGGCCAT
TGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGGGAGGAGGGAG
GGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTCGGAGTCTGCC
GGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAGAGATGCGAGG
GTACATTGAGGTGAGAAGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGG
GAGGGAAGGAGAAAGTTTTTTGGGGAGTGCAAAGCACATTCCACCGGCAT
GAACCTGACCATCATCCTTCCCACCTTGTCATCCTCCCTTCCTCTCTCTC
TCTTACTGCTTCTTTCACAGGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA
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Coding sequence (CDS) from alignment at chr24:313488..316036-

>NO24G01130.1 ID=NO24G01130.1|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr24:313488..316036- (Nannochloropsis oceanica)
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGAAAGACCTCGTCGAGATCTCC
CTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGGTTCA
AGCCCGACTGGTGCTAGTGCTGGATAAGACCAGCTATCCCTCCCTCCCTC
CCGCCTTCTCCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCC
CAGGTGCATTCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAG
GGAGGGCGAGGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCT
GCTTGCCTTTATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAA
AAAGTCGTGTGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGG
GGGGGAGGGAGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATG
TGGGATGTCTGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAG
GGCAGAAAGGAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGAC
TCTGCAGCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAGGAGGAGC
ACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGCCTTCCTC
CTCAGCCCTGACCTCGACAGCGAAATCCGCAGCGCCTTTCAAAAGGACCT
CTCGGAGGAAGAGAGGCGGAAACGACAGCTCCGTCTCGCCATTAAATCCA
CTGGCACCAAAGTGCTTCAGACCCAGCGGGAGCTAGCAGAAGCAGAGGCG
GCGTGGCGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTG
TTGTGTGTGTCGGCGTCCTTTGCGACTAGTCGACATGCCTCCTCGCCTGG
TAGAGGCCATTGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGG
GAGGAGGGAGGGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTC
GGAGTCTGCCGGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAG
AGATGCGAGGGTACATTGAGGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA
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Synonyms
Publications