NO24G01060, NO24G01060 (gene) Nannochloropsis oceanica

Overview
NameNO24G01060
Unique NameNO24G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1127
Alignment locationchr24:293667..294793 -

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase E
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:293667..294793 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003676nucleic acid binding
GO:0003824catalytic activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR024936Cyclophilin-type_PPIase
IPR000504RRM_dom
Homology
BLAST of NO24G01060 vs. NCBI_GenBank
Match: CBN78707.1 (Peptidyl-prolyl cis-trans isomerase E [Ectocarpus siliculosus])

HSP 1 Score: 156.0 bits (393), Expect = 8.300e-35
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 0
Query:    5 PKPKQDNSIIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKD----LGDQLD 124
            PK  Q    +YVGGL+E+  EEILHAAF+PFG+I+EVN+PKD   NT RGFGFV FE  +DA AAIDNM+GAEL G+VL+ N AKPM+HKLGA  AVWS D+W+K  L E  D     GD+L+
Sbjct:    2 PKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELE 124          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_019638499.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Branchiostoma belcheri])

HSP 1 Score: 134.0 bits (336), Expect = 3.400e-28
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGD 121
            I+YVGGL E+  E++LHAAFIPFG+++++NIP D++    RGF FV FE+A+DAAAAIDNM  +EL GR ++CN+AKPM+ K G+ KAVWS D W K    +  D G+
Sbjct:    9 IVYVGGLAEEVDEKVLHAAFIPFGDLVDINIPLDYETQKHRGFAFVEFESAEDAAAAIDNMHESELFGRTIRCNLAKPMKLKEGSMKAVWSDDAWLKKFAGKTLDEGE 116          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_013384927.1 (peptidyl-prolyl cis-trans isomerase E [Lingula anatina])

HSP 1 Score: 133.7 bits (335), Expect = 4.400e-28
Identity = 63/114 (55.26%), Postives = 83/114 (72.81%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGDQLDFEE 127
            I+YVGGL E+  E+ILHAAFIPFG+I+++NIP D++    RGF FV FE A+DAAAAIDNM  +EL GR ++ N+AKPM+ K GA++AVWS D W +    E    GD+ + EE
Sbjct:    7 IVYVGGLAEEVDEKILHAAFIPFGDIVDINIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNDSELFGRTVRTNLAKPMKIKEGASRAVWSEDSWLQEHAGETLSKGDKENEEE 120          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_013384928.1 (peptidyl-prolyl cis-trans isomerase E-like [Lingula anatina])

HSP 1 Score: 132.5 bits (332), Expect = 9.800e-28
Identity = 62/114 (54.39%), Postives = 83/114 (72.81%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGDQLDFEE 127
            I+YVGGL E+  E+ILHAAFIPFG+I+++NIP D++    RGF FV FE A+DAAAAIDNM  +EL GR ++ N+AKPM+ K GA++AVWS D W +    E    GD+ + +E
Sbjct:    7 IVYVGGLAEEVDEKILHAAFIPFGDIVDINIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNDSELFGRTVRTNLAKPMKIKEGASRAVWSEDSWLQEHAGETLSKGDKENEDE 120          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_013786126.1 (peptidyl-prolyl cis-trans isomerase E-like, partial [Limulus polyphemus])

HSP 1 Score: 131.3 bits (329), Expect = 2.200e-27
Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGDQ 122
            I+YVGGL E+  E++LHAAFIPFG+I+++ IP D++    RGF FV FE A+DAAAAIDNM  +EL GR ++ N+AKPM+ K G+T+AVW+ D W K    E  +L DQ
Sbjct:    8 IVYVGGLAEEVDEKVLHAAFIPFGDIVDIQIPLDYETQKHRGFAFVEFELAEDAAAAIDNMNDSELFGRTVRVNLAKPMKIKEGSTRAVWADDTWLKQHAGETLELEDQ 116          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_009046006.1 (hypothetical protein LOTGIDRAFT_205061 [Lottia gigantea] >ESP03333.1 hypothetical protein LOTGIDRAFT_205061 [Lottia gigantea])

HSP 1 Score: 129.0 bits (323), Expect = 1.100e-26
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGDQLD 124
            ++YVGGL E+  ++ILHAAFIPFG++I++NIP D++    RGF FV FE A+DAAAAIDNM  +EL GR ++ N+AKPM+ K GA++AVW+ D W +    E  +  D  D
Sbjct:   11 MVYVGGLAEEVDDKILHAAFIPFGDVIDINIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNDSELFGRTIRVNLAKPMKVKEGASRAVWAEDSWLQQHAGETLEKNDDAD 121          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_002406178.1 (cyclophilin type peptidyl-prolyl cis-trans isomerase, putative [Ixodes scapularis] >EEC03460.1 cyclophilin type peptidyl-prolyl cis-trans isomerase, putative [Ixodes scapularis])

HSP 1 Score: 128.3 bits (321), Expect = 1.900e-26
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAE 115
            I+YVGGL E+  E++LHAAFIPFG++++V IP D++    RGF FV FE A+DA AAIDNM  +EL GR ++ NVAKPM+ K G+T+AVWS D W +    E
Sbjct:    8 IVYVGGLAEEVDEKVLHAAFIPFGDVVDVQIPLDYETEKHRGFAFVEFEQAEDAVAAIDNMNDSELFGRTIRVNVAKPMKIKEGSTRAVWSEDSWLRQHAGE 109          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_020384173.1 (peptidyl-prolyl cis-trans isomerase E isoform X1 [Rhincodon typus])

HSP 1 Score: 127.9 bits (320), Expect = 2.400e-26
Identity = 55/97 (56.70%), Postives = 77/97 (79.38%), Query Frame = 0
Query:   13 IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFK 110
            ++YVGGL E+  E++LHAAFIPFG+I+++ IP D++    RGF F+ FENA+DAAAAIDNM  +EL GR ++ N+AKPM+ K G+++AVWS D+W K
Sbjct:    7 VLYVGGLAEEVDEKVLHAAFIPFGDIMDIQIPLDYETEKHRGFAFIEFENAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRAVWSDDDWLK 103          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_020625738.1 (peptidyl-prolyl cis-trans isomerase E-like [Orbicella faveolata])

HSP 1 Score: 127.9 bits (320), Expect = 2.400e-26
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 0
Query:    6 KPKQDNS-IIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGDQLDFEELVPEAA 133
            K K  N  ++YVGGL E+  E++LHAAFIPFG+I +V IP D+     RGFGFV FE A+DAAAAIDNM  +EL GR ++ N+AKPM+ K G ++AVWS D W      +  +  D  + EE   E +
Sbjct:   45 KSKMANKRMVYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYSSQKHRGFGFVEFELAEDAAAAIDNMNESELFGRTIRVNIAKPMKIKEGYSRAVWSEDSWLSKHAGQTLEDADMKNAEEKAKETS 172          
BLAST of NO24G01060 vs. NCBI_GenBank
Match: XP_002588702.1 (hypothetical protein BRAFLDRAFT_287419 [Branchiostoma floridae] >EEN44713.1 hypothetical protein BRAFLDRAFT_287419 [Branchiostoma floridae])

HSP 1 Score: 127.5 bits (319), Expect = 3.200e-26
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 0
Query:   15 YVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKDLGD 121
            + GGL E+  E++LHAAFIPFG+++++NIP D++    RGF FV FE A+DAAAAIDNM  +EL GR ++CN+AKPM+ K G+ KAVWS D W K    +  D G+
Sbjct:    4 FPGGLAEEVDEKVLHAAFIPFGDLVDINIPLDYETQKHRGFAFVEFEGAEDAAAAIDNMHESELFGRTIRCNLAKPMKLKEGSMKAVWSEDSWLKKFAGKSLDEGE 109          
The following BLAST results are available for this feature:
BLAST of NO24G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN78707.18.300e-3560.98Peptidyl-prolyl cis-trans isomerase E [Ectocarpus ... [more]
XP_019638499.13.400e-2855.56PREDICTED: peptidyl-prolyl cis-trans isomerase E-l... [more]
XP_013384927.14.400e-2855.26peptidyl-prolyl cis-trans isomerase E [Lingula ana... [more]
XP_013384928.19.800e-2854.39peptidyl-prolyl cis-trans isomerase E-like [Lingul... [more]
XP_013786126.12.200e-2755.05peptidyl-prolyl cis-trans isomerase E-like, partia... [more]
XP_009046006.11.100e-2652.25hypothetical protein LOTGIDRAFT_205061 [Lottia gig... [more]
XP_002406178.11.900e-2655.88cyclophilin type peptidyl-prolyl cis-trans isomera... [more]
XP_020384173.12.400e-2656.70peptidyl-prolyl cis-trans isomerase E isoform X1 [... [more]
XP_020625738.12.400e-2649.22peptidyl-prolyl cis-trans isomerase E-like [Orbice... [more]
XP_002588702.13.200e-2653.77hypothetical protein BRAFLDRAFT_287419 [Branchiost... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01060.1NO24G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01060.1NO24G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01060 ID=NO24G01060|Name=NO24G01060|organism=Nannochloropsis oceanica|type=gene|length=1127bp
ATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATCATTTACGTCGg
taagtgcaccactagtcctccctcatcgtcctccctcagcttagccttct
cttgccaaggcaacaaggcattctcccgacaagtgcgcagtgcctctagc
gaggcgtggcaggtggggctgtcgagtcagagtgcttcccaaaccctttc
gcgacccttcattgcttgcggatgtcattactttttgctccatgcgctcc
tccctgcccttccctccctccctccctcactcagtaccttgacaaggaac
gcttacggtgatgatgctgcagattgccttcactacgagccctgtgatta
ctgacatttaccgttctctcctctcttccccctccctttccttcctccct
cagGCGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCTTC
ATCCCATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAAGA
AAgtaatttgggaggaatggagggagggaagagggaggaaagagggagga
aagagggagggagagagggaggaagggagggaggagaggaagaaaggaca
cccttcccacccacctatacacactatgatcgtggtatttcatcctcatc
gtctccttcccttcttactttcttcattcttctaagACACTACCCGCGGC
TTTGGGTTTGTACATTTCGAAAACGCCGACGACGCCGCCGCCGCTATTGA
CAACATGGAAGGGGCCGAGTTGCTCGgtacgtgcgtttcattatctatcc
ctcttttccaggcactctctagtctagtccattgcgcctccttctgtgcc
tgaacctgctgataggctctgaaatattcattttctaaagcttgattgtt
gaaatttgtgtctccctccctccctccctggccccctccctccctccctg
atccccgcagGCCGCGTCCTCAAGTGCAACGTGGCCAAGCCCATGCAGCA
CAAGCTGGGGGCCACCAAGGCGGTGTGGTCCACAGACGAATGGTTCAAAA
CACAGCTGGCGGAGGACAAGGACCTAGGCGATCAACTTGATTTCGAAGAG
TTGGTGCCCGAGGCAGCAGGGAAGTAA
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protein sequence of NO24G01060.1

>NO24G01060.1-protein ID=NO24G01060.1-protein|Name=NO24G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MDPKPKPKQDNSIIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKEN
TTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKA
VWSTDEWFKTQLAEDKDLGDQLDFEELVPEAAGK*
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Synonyms
Publications