NO24G01060.1, NO24G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01060.1
Unique NameNO24G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr24:293667..294793 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:293667..294793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01060.1 vs.
Match: CBN78707.1 (Peptidyl-prolyl cis-trans isomerase E [Ectocarpus siliculosus])

HSP 1 Score: 156.0 bits (393), Expect = 8.300e-35
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 0 
Query:    5 PKPKQDNSIIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKENTTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKAVWSTDEWFKTQLAEDKD----LGDQLD 124
            PK  Q    +YVGGL+E+  EEILHAAF+PFG+I+EVN+PKD   NT RGFGFV FE  +DA AAIDNM+GAEL G+VL+ N AKPM+HKLGA  AVWS D+W+K  L E  D     GD+L+
Sbjct:    2 PKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELE 124
The following BLAST results are available for this feature:
BLAST of NO24G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78707.18.300e-3560.98Peptidyl-prolyl cis-trans isomerase E [Ectocarpus ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01060NO24G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01060.1NO24G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01060.1.cds1NO24G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01060.1.cds2NO24G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01060.1.cds3NO24G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01060.1.cds4NO24G01060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01060.1 ID=NO24G01060.1|Name=NO24G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATCATTTACGTCGG
CGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCTTCATCC
CATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAAGAAAAC
ACTACCCGCGGCTTTGGGTTTGTACATTTCGAAAACGCCGACGACGCCGC
CGCCGCTATTGACAACATGGAAGGGGCCGAGTTGCTCGGCCGCGTCCTCA
AGTGCAACGTGGCCAAGCCCATGCAGCACAAGCTGGGGGCCACCAAGGCG
GTGTGGTCCACAGACGAATGGTTCAAAACACAGCTGGCGGAGGACAAGGA
CCTAGGCGATCAACTTGATTTCGAAGAGTTGGTGCCCGAGGCAGCAGGGA
AGTAA
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protein sequence of NO24G01060.1

>NO24G01060.1-protein ID=NO24G01060.1-protein|Name=NO24G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MDPKPKPKQDNSIIYVGGLDEKSTEEILHAAFIPFGNIIEVNIPKDFKEN
TTRGFGFVHFENADDAAAAIDNMEGAELLGRVLKCNVAKPMQHKLGATKA
VWSTDEWFKTQLAEDKDLGDQLDFEELVPEAAGK*
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mRNA from alignment at chr24:293667..294793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01060.1 ID=NO24G01060.1|Name=NO24G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp|location=Sequence derived from alignment at chr24:293667..294793- (Nannochloropsis oceanica)
ATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATCATTTACGTCGG
TAAGTGCACCACTAGTCCTCCCTCATCGTCCTCCCTCAGCTTAGCCTTCT
CTTGCCAAGGCAACAAGGCATTCTCCCGACAAGTGCGCAGTGCCTCTAGC
GAGGCGTGGCAGGTGGGGCTGTCGAGTCAGAGTGCTTCCCAAACCCTTTC
GCGACCCTTCATTGCTTGCGGATGTCATTACTTTTTGCTCCATGCGCTCC
TCCCTGCCCTTCCCTCCCTCCCTCCCTCACTCAGTACCTTGACAAGGAAC
GCTTACGGTGATGATGCTGCAGATTGCCTTCACTACGAGCCCTGTGATTA
CTGACATTTACCGTTCTCTCCTCTCTTCCCCCTCCCTTTCCTTCCTCCCT
CAGGCGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCTTC
ATCCCATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAAGA
AAGTAATTTGGGAGGAATGGAGGGAGGGAAGAGGGAGGAAAGAGGGAGGA
AAGAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGAGAGGAAGAAAGGACA
CCCTTCCCACCCACCTATACACACTATGATCGTGGTATTTCATCCTCATC
GTCTCCTTCCCTTCTTACTTTCTTCATTCTTCTAAGACACTACCCGCGGC
TTTGGGTTTGTACATTTCGAAAACGCCGACGACGCCGCCGCCGCTATTGA
CAACATGGAAGGGGCCGAGTTGCTCGGTACGTGCGTTTCATTATCTATCC
CTCTTTTCCAGGCACTCTCTAGTCTAGTCCATTGCGCCTCCTTCTGTGCC
TGAACCTGCTGATAGGCTCTGAAATATTCATTTTCTAAAGCTTGATTGTT
GAAATTTGTGTCTCCCTCCCTCCCTCCCTGGCCCCCTCCCTCCCTCCCTG
ATCCCCGCAGGCCGCGTCCTCAAGTGCAACGTGGCCAAGCCCATGCAGCA
CAAGCTGGGGGCCACCAAGGCGGTGTGGTCCACAGACGAATGGTTCAAAA
CACAGCTGGCGGAGGACAAGGACCTAGGCGATCAACTTGATTTCGAAGAG
TTGGTGCCCGAGGCAGCAGGGAAGTAA
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Coding sequence (CDS) from alignment at chr24:293667..294793-

>NO24G01060.1 ID=NO24G01060.1|Name=NO24G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr24:293667..294793- (Nannochloropsis oceanica)
ATGGACCCGAAGCCCAAACCCAAGCAAGACAACAGCATCATTTACGTCGG
CGGCCTGGACGAGAAGAGCACTGAAGAAATACTACACGCCGCCTTCATCC
CATTTGGGAATATAATTGAAGTTAATATTCCCAAGGACTTCAAAGAAAAC
ACTACCCGCGGCTTTGGGTTTGTACATTTCGAAAACGCCGACGACGCCGC
CGCCGCTATTGACAACATGGAAGGGGCCGAGTTGCTCGGCCGCGTCCTCA
AGTGCAACGTGGCCAAGCCCATGCAGCACAAGCTGGGGGCCACCAAGGCG
GTGTGGTCCACAGACGAATGGTTCAAAACACAGCTGGCGGAGGACAAGGA
CCTAGGCGATCAACTTGATTTCGAAGAGTTGGTGCCCGAGGCAGCAGGGA
AGTAA
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Synonyms
Publications