NO24G00980, NO24G00980 (gene) Nannochloropsis oceanica

Overview
NameNO24G00980
Unique NameNO24G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr24:265095..265796 -

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Properties
Property NameValue
DescriptionU1 small nuclear ribonucleoprotein C
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:265095..265796 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR000690Znf_C2H2_matrin
IPR017340U1_snRNP-C
IPR013085Znf_U1-C
IPR003604Znf_U1
Homology
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: OWZ09498.1 (U1 small nuclear ribonucleoprotein C [Phytophthora megakarya])

HSP 1 Score: 102.4 bits (254), Expect = 9.200e-19
Identity = 53/102 (51.96%), Postives = 63/102 (61.76%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAA-------WEASKGMPVGGSITMPILPGGHQSGGMGSF---------ANTGPGPMLRPP 87
            MPRY+CDYC TYLTHDS PGRKQHNRGWKHRENVK+YYEQ++A         E  +G    GS  +P+ P G  +GGM  +             PGP +RPP
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRGWKHRENVKLYYEQFLAGQGVIMTPGEWLRGPTPAGS--LPLRPNGPMNGGMPGYPPRXXXXXXXXXPPGPGIRPP 100
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: XP_008913473.1 (hypothetical protein PPTG_17570 [Phytophthora parasitica INRA-310] >ETI34841.1 hypothetical protein F443_18740 [Phytophthora parasitica P1569] >ETK75126.1 hypothetical protein L915_18222 [Phytophthora parasitica] >ETL28552.1 hypothetical protein L916_18126 [Phytophthora parasitica] >ETL81806.1 hypothetical protein L917_17940 [Phytophthora parasitica] >ETM35014.1 hypothetical protein L914_18026 [Phytophthora parasitica] >ETN01146.1 hypothetical protein PPTG_17570 [Phytophthora parasitica INRA-310] >ETO63584.1 hypothetical protein F444_18738 [Phytophthora parasitica P1976] >ETO63585.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETO63586.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETO63587.1 hypothetical protein, variant 3 [Phytophthora parasitica P1976] >ETO63588.1 hypothetical protein, variant 4 [Phytophthora parasitica P1976] >ETO63589.1 hypothetical protein, variant 5 [Phytophthora parasitica P1976] >ETO63590.1 hypothetical protein, variant 6 [Phytophthora parasitica P1976] >ETO63591.1 hypothetical protein, variant 7 [Phytophthora parasitica P1976] >ETO63592.1 hypothetical protein, variant 8 [Phytophthora parasitica P1976] >ETP04681.1 hypothetical protein F441_18599 [Phytophthora parasitica CJ01A1] >ETP32829.1 hypothetical protein F442_18553 [Phytophthora parasitica P10297] >KUF90163.1 U1 small nuclear ribonucleoprotein C [Phytophthora nicotianae])

HSP 1 Score: 95.5 bits (236), Expect = 1.100e-16
Identity = 51/102 (50.00%), Postives = 55/102 (53.92%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKGMPVGGSITMPILPGGHQSGGMGSFANTGPGPMLRPPGAIGGFPPGVMRPGMP 103
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YYEQ++A                          G G   N  PG  LR P   G  PP  M  GMP
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLA--------------------------GQGVIMN--PGEWLRGPAPAGSLPPRPMNGGMP 74
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: ETO63593.1 (hypothetical protein, variant 9 [Phytophthora parasitica P1976])

HSP 1 Score: 95.5 bits (236), Expect = 1.100e-16
Identity = 51/102 (50.00%), Postives = 55/102 (53.92%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKGMPVGGSITMPILPGGHQSGGMGSFANTGPGPMLRPPGAIGGFPPGVMRPGMP 103
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YYEQ++A                          G G   N  PG  LR P   G  PP  M  GMP
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLA--------------------------GQGVIMN--PGEWLRGPAPAGSLPPRPMNGGMP 74
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: XP_009516679.1 (hypothetical protein PHYSODRAFT_476304 [Phytophthora sojae] >EGZ29404.1 hypothetical protein PHYSODRAFT_476304 [Phytophthora sojae])

HSP 1 Score: 94.4 bits (233), Expect = 2.500e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMA 44
            MPRY+CDYC TYLTHDS PGRKQHNRGWKHRENVK+YYEQ++A
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRGWKHRENVKLYYEQFLA 43
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: CCI40504.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 94.4 bits (233), Expect = 2.500e-16
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKGMPVGGSITMPILPGGHQSG 70
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YYEQ +A       +  GGS+ M + PG    G
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQLLANQTI---LNTGGSVAMLMAPGAWLRG 66
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: POM79504.1 (U1 small nuclear ribonucleoprotein C [Phytophthora palmivora var. palmivora])

HSP 1 Score: 94.4 bits (233), Expect = 2.500e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMA 44
            MPRY+CDYC TYLTHDS PGRKQHNRGWKHRENVK+YYEQ++A
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRGWKHRENVKLYYEQFLA 43
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: CCA19406.1 (U1 small nuclear ribonucleoprotein C putative [Albugo laibachii Nc14])

HSP 1 Score: 92.0 bits (227), Expect = 1.200e-15
Identity = 50/103 (48.54%), Postives = 59/103 (57.28%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKGMPVGGSITMPILPGGHQSGGMGSFANTGPGPMLRPPGAIGGFPPGVMRPGMPP 104
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YY+Q +A       +  GGS+ M + PG             GP P +  P          +RPGM P
Sbjct:   47 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYDQLLANQTI---LSTGGSVAMLMAPGAWL---------RGPTPGIPTP----------LRPGMIP 127
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: GAX94337.1 (Hypothetical protein PINS_002233 [Pythium insidiosum])

HSP 1 Score: 91.3 bits (225), Expect = 2.100e-15
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQY-------MAAWEASKGMPVGGSITMPILPG 65
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YYEQ+       M   +  +G P  G++    +PG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLTGQGVAMTPGQWLRGPPAPGALPPRPMPG 71
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: XP_024577109.1 (u1 small nuclear ribonucleoprotein c [Plasmopara halstedii] >CEG40740.1 u1 small nuclear ribonucleoprotein c [Plasmopara halstedii])

HSP 1 Score: 90.9 bits (224), Expect = 2.800e-15
Identity = 52/96 (54.17%), Postives = 58/96 (60.42%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKGMPVGGSITMPILPGGHQSG--GMGSFANTGPGPMLRPPGAIGGFPP 95
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YYEQ++A          G  + M   PG    G   MGS      GP+L   G I G PP
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLA----------GQGVVMN--PGEWLRGPAPMGSLPPRPSGPLL---GGIPGIPP 81
[Close]
BLAST of NO24G00980 vs. NCBI_GenBank
Match: XP_002901685.1 (U1 small nuclear ribonucleoprotein C, putative [Phytophthora infestans T30-4] >D0NHA2.1 RecName: Full=U1 small nuclear ribonucleoprotein C; Short=U1 snRNP C; Short=U1-C; Short=U1C >EEY58741.1 U1 small nuclear ribonucleoprotein C, putative [Phytophthora infestans T30-4])

HSP 1 Score: 90.5 bits (223), Expect = 3.600e-15
Identity = 47/94 (50.00%), Postives = 52/94 (55.32%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKGMPVGGSITMPILPGGHQSGGMGSFANTGPGPMLRPPGAIGGFPP 95
            MPRY+CDYC TYLTHDS  GRKQHNRGWKHRENVK+YYEQ++A                          G G   N  PG  LR P  +G  PP
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLA--------------------------GQGVIMN--PGEWLRGPAPMGSLPP 66
The following BLAST results are available for this feature:
BLAST of NO24G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ09498.19.200e-1951.96U1 small nuclear ribonucleoprotein C [Phytophthora... [more]
XP_008913473.11.100e-1650.00hypothetical protein PPTG_17570 [Phytophthora para... [more]
ETO63593.11.100e-1650.00hypothetical protein, variant 9 [Phytophthora para... [more]
XP_009516679.12.500e-1686.05hypothetical protein PHYSODRAFT_476304 [Phytophtho... [more]
CCI40504.12.500e-1662.32unnamed protein product [Albugo candida][more]
POM79504.12.500e-1686.05U1 small nuclear ribonucleoprotein C [Phytophthora... [more]
CCA19406.11.200e-1548.54U1 small nuclear ribonucleoprotein C putative [Alb... [more]
GAX94337.12.100e-1557.75Hypothetical protein PINS_002233 [Pythium insidios... [more]
XP_024577109.12.800e-1554.17u1 small nuclear ribonucleoprotein c [Plasmopara h... [more]
XP_002901685.13.600e-1550.00U1 small nuclear ribonucleoprotein C, putative [Ph... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00980.1NO24G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531378gene_7327Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00980.1NO24G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00980 ID=NO24G00980|Name=NO24G00980|organism=Nannochloropsis oceanica|type=gene|length=702bp
ATGCCCCGATATTTCTGTGATTACTGCCAGACGTATCTTACGCACGACTC
GGCTCCGGGGAGGAAGCAGCACAATCGCGGGTGGAAGCATCGGGAGAATG
TAAAGATGTACTACGAGCAGTACATGGCCGCCTGGGAAGCTTCTAAAGgt
agggacggagggagggttggcgggaaggggagaaggggcggggaaatttg
cgaaggaggggaaggggaacagtgattactgggacccgtagctcgggtgg
gcattcgataagtgatgcaagcagacctccccttgatgccccttggtcgt
caaatttctcacagtactcttggcccccttcccacaaccccatagGCATG
CCAGTGGGAGGCAGTATTACGATGCCTATTCTGCCTGGCGGTCACCAGAG
TGGGGGCATGGGCTCCTTCGCTAATACGGGGCCTGGTCCGATGCTTAGGC
CTCCGGGTGCGATAGGCGGCTTTCCACCAGgtaggaggggaggacgggag
ggagggaaaggaggtgggggggacgaaatctgatccttcctatcatcttc
tattaaactctgatatctatggttatgctctctcacactccctcgctccc
ttcccttccttccttcctccttgctctccttcaaatcactcagGCGTGAT
GCGACCAGGCATGCCCCCCCCGGTGGTCCACCTGGGCCTGGAGATAGGAT
GA
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protein sequence of NO24G00980.1

>NO24G00980.1-protein ID=NO24G00980.1-protein|Name=NO24G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKG
MPVGGSITMPILPGGHQSGGMGSFANTGPGPMLRPPGAIGGFPPGVMRPG
MPPPVVHLGLEIG*
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Synonyms
Publications