NO24G00980.1, NO24G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00980.1
Unique NameNO24G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length342
Alignment locationchr24:265095..265796 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:265095..265796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00980.1 vs.
Match: OWZ09498.1 (U1 small nuclear ribonucleoprotein C [Phytophthora megakarya])

HSP 1 Score: 103.2 bits (256), Expect = 5.400e-19
Identity = 57/114 (50.00%), Postives = 69/114 (60.53%), Query Frame = 0 
Query:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAA-------WEASKGMPVGGSITMPILPGGHQSGGMGSFANTG--PGPMLRPPGAIGGFPPGVMRPGMPPPV 106
            MPRY+CDYC TYLTHDS PGRKQHNRGWKHRENVK+YYEQ++A         E  +G    GS  +P+ P G  +GGM  +   G  P  M+ PPG           PG+ PP+
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRGWKHRENVKLYYEQFLAGQGVIMTPGEWLRGPTPAGS--LPLRPNGPMNGGMPGYPPRGIPPRGMMPPPG-----------PGIRPPM 101
The following BLAST results are available for this feature:
BLAST of NO24G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OWZ09498.15.400e-1950.00U1 small nuclear ribonucleoprotein C [Phytophthora... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00980NO24G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00980.1NO24G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00980.1.cds1NO24G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00980.1.cds2NO24G00980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00980.1.cds3NO24G00980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00980.1 ID=NO24G00980.1|Name=NO24G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=342bp
ATGCCCCGATATTTCTGTGATTACTGCCAGACGTATCTTACGCACGACTC
GGCTCCGGGGAGGAAGCAGCACAATCGCGGGTGGAAGCATCGGGAGAATG
TAAAGATGTACTACGAGCAGTACATGGCCGCCTGGGAAGCTTCTAAAGGC
ATGCCAGTGGGAGGCAGTATTACGATGCCTATTCTGCCTGGCGGTCACCA
GAGTGGGGGCATGGGCTCCTTCGCTAATACGGGGCCTGGTCCGATGCTTA
GGCCTCCGGGTGCGATAGGCGGCTTTCCACCAGGCGTGATGCGACCAGGC
ATGCCCCCCCCGGTGGTCCACCTGGGCCTGGAGATAGGATGA
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protein sequence of NO24G00980.1

>NO24G00980.1-protein ID=NO24G00980.1-protein|Name=NO24G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAWEASKG
MPVGGSITMPILPGGHQSGGMGSFANTGPGPMLRPPGAIGGFPPGVMRPG
MPPPVVHLGLEIG*
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mRNA from alignment at chr24:265095..265796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00980.1 ID=NO24G00980.1|Name=NO24G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at chr24:265095..265796- (Nannochloropsis oceanica)
ATGCCCCGATATTTCTGTGATTACTGCCAGACGTATCTTACGCACGACTC
GGCTCCGGGGAGGAAGCAGCACAATCGCGGGTGGAAGCATCGGGAGAATG
TAAAGATGTACTACGAGCAGTACATGGCCGCCTGGGAAGCTTCTAAAGGT
AGGGACGGAGGGAGGGTTGGCGGGAAGGGGAGAAGGGGCGGGGAAATTTG
CGAAGGAGGGGAAGGGGAACAGTGATTACTGGGACCCGTAGCTCGGGTGG
GCATTCGATAAGTGATGCAAGCAGACCTCCCCTTGATGCCCCTTGGTCGT
CAAATTTCTCACAGTACTCTTGGCCCCCTTCCCACAACCCCATAGGCATG
CCAGTGGGAGGCAGTATTACGATGCCTATTCTGCCTGGCGGTCACCAGAG
TGGGGGCATGGGCTCCTTCGCTAATACGGGGCCTGGTCCGATGCTTAGGC
CTCCGGGTGCGATAGGCGGCTTTCCACCAGGTAGGAGGGGAGGACGGGAG
GGAGGGAAAGGAGGTGGGGGGGACGAAATCTGATCCTTCCTATCATCTTC
TATTAAACTCTGATATCTATGGTTATGCTCTCTCACACTCCCTCGCTCCC
TTCCCTTCCTTCCTTCCTCCTTGCTCTCCTTCAAATCACTCAGGCGTGAT
GCGACCAGGCATGCCCCCCCCGGTGGTCCACCTGGGCCTGGAGATAGGAT
GA
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Coding sequence (CDS) from alignment at chr24:265095..265796-

>NO24G00980.1 ID=NO24G00980.1|Name=NO24G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at chr24:265095..265796- (Nannochloropsis oceanica)
ATGCCCCGATATTTCTGTGATTACTGCCAGACGTATCTTACGCACGACTC
GGCTCCGGGGAGGAAGCAGCACAATCGCGGGTGGAAGCATCGGGAGAATG
TAAAGATGTACTACGAGCAGTACATGGCCGCCTGGGAAGCTTCTAAAGGC
ATGCCAGTGGGAGGCAGTATTACGATGCCTATTCTGCCTGGCGGTCACCA
GAGTGGGGGCATGGGCTCCTTCGCTAATACGGGGCCTGGTCCGATGCTTA
GGCCTCCGGGTGCGATAGGCGGCTTTCCACCAGGCGTGATGCGACCAGGC
ATGCCCCCCCCGGTGGTCCACCTGGGCCTGGAGATAGGATGA
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Synonyms
Publications