NO24G00890, NO24G00890 (gene) Nannochloropsis oceanica

Overview
NameNO24G00890
Unique NameNO24G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr24:245452..246306 -

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Properties
Property NameValue
DescriptionCDP-diacylglycerol-inositol 3-phosphatidyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:245452..246306 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016780phosphotransferase activity, for other substituted phosphate groups
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0008654phospholipid biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR000462CDP-OH_P_trans
Homology
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_005853569.1 (CDP-diacylglycerol-inositol 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526] >EKU22790.1 CDP-diacylglycerol-inositol 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 192.2 bits (487), Expect = 2.200e-45
Identity = 105/170 (61.76%), Postives = 125/170 (73.53%), Query Frame = 0
Query:   71 ATFYATQVS-NTGLLPHAANTLLGKGLDHLSAALVDDGNRQKANNSNGTAFLRSAEPDLLAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALG 240
            AT YA      TGLL   A TLLGK L   S+AL+ D  R +A ++  T  L + EPDLLAAL+VF+   ALD LDG  ARR+ Q S+LGA+LD+ ADNVLR CMWVSSALLDAR ALPAL+C+SVEW TLLA+QL+  RE GRHWK LR ++P +V+YFFSNNFRN LG
Sbjct:    2 ATHYAAHAGYTTGLLAPIATTLLGKALAQASSALLRDMER-RAGSTGETEALPTVEPDLLAALVVFLAAGALDLLDGVAARRMKQCSRLGALLDVVADNVLRGCMWVSSALLDARTALPALICISVEWLTLLASQLLQHREQGRHWKKLRTSEPWVVRYFFSNNFRNVLG 170          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: EWM21096.1 (CDP-alcohol phosphatidyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 156.4 bits (394), Expect = 1.300e-34
Identity = 92/163 (56.44%), Postives = 114/163 (69.94%), Query Frame = 0
Query:   14 RLPVLLYIPNLICYSRLVLSFYGLSIVAHTVTRQQEDARHAAHDG-GSSCSVQAMMQTATFYATQVS-NTGLLPHAANTLLGKGLDHLSAALVDDGNRQKANNSNGTAFLRSAEPDLLAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCM 175
            RLPVLLY+PNL+CY+RL+LS YGLS+V  TV RQQE +R A   G  ++CSVQA++Q AT YA      TGLL   A TLLGK L   S+AL+ D  R +A  +  T  L + EPDLLAAL+VF+   ALD LDG  ARR+ Q S+LGA+LD+ ADNVLR C+
Sbjct:   31 RLPVLLYVPNLLCYARLLLSIYGLSMVIQTVLRQQEASRRALLAGEAANCSVQAVVQMATHYAAHAGYTTGLLAPIATTLLGKALAQASSALLRDMER-RAGGAGETEALSTVEPDLLAALVVFLAAGALDLLDGVAARRMKQCSRLGALLDVVADNVLRGCI 192          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_005838811.1 (hypothetical protein GUITHDRAFT_102442 [Guillardia theta CCMP2712] >EKX51831.1 hypothetical protein GUITHDRAFT_102442 [Guillardia theta CCMP2712])

HSP 1 Score: 115.2 bits (287), Expect = 3.400e-22
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 0
Query:  123 SAEPDLLAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAPSTPCSSMQSPRLAT 265
            +  P   ++L V +++  LD +DG +ARRL QTS+LGA+LDI ADN+ RS +W  ++   A +   A+  +S+EW TL ATQ+    E GRHWK     +P +V+ +F NNF+N LG  GI  LFL P+      Q P +A+
Sbjct:   28 AVSPPSFSSLAVLLLSFILDLVDGMLARRLGQTSKLGAILDILADNLGRSAVWAKASGRSASVHAFAVFFISLEWVTLFATQMTSHLEGGRHWKQQTSEEPWMVRAYFKNNFKNPLGTSGILGLFLLPTYIFIDSQFPSIAS 169          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_002177371.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51834.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 114.0 bits (284), Expect = 7.600e-22
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 0
Query:  131 ALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLF 248
            A  +++++ +LD +DG +AR L QTS+ G +LDI ADN+LRSC+WV++A+ +    +P+ + L +EW T+LATQL  +     HWK  R  DP  +Q FF+NNFRN LG+ GI  LF
Sbjct:   35 AFSLWILSASLDLIDGILARALKQTSKFGVLLDIGADNILRSCVWVAAAVSNPAYLIPSTIILCLEWCTMLATQLHAEAHRS-HWKNARQKDPIFIQAFFANNFRNPLGLLGIYGLF 150          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_008306892.1 (PREDICTED: uncharacterized protein LOC103377748 [Cynoglossus semilaevis] >XP_008306893.1 PREDICTED: uncharacterized protein LOC103377748 [Cynoglossus semilaevis] >XP_016887503.1 PREDICTED: uncharacterized protein LOC103377748 [Cynoglossus semilaevis] >XP_016887504.1 PREDICTED: uncharacterized protein LOC103377748 [Cynoglossus semilaevis])

HSP 1 Score: 77.8 bits (190), Expect = 6.100e-11
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 0
Query:  132 LLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAP 251
            +L++++ + LD +DG++ARRL QTS+ GA LD+  DN+ R  +W        +L     L  +VEW   +          G HWK    + P L+Q   +N FR+ALG+W +  L   P
Sbjct:   35 VLIYLVFIVLDGVDGWLARRLGQTSKFGAWLDVVVDNLGRGMLW-------GQLFKWGWLVSAVEWCVFVCN----HSSRGDHWKSSFTSSPPLIQAIMANGFRSALGLWVVSGLHCLP 142          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_011617280.1 (PREDICTED: uncharacterized protein LOC105418711 [Takifugu rubripes])

HSP 1 Score: 77.4 bits (189), Expect = 7.900e-11
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 0
Query:  119 AFLRSAEPDLLAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAP 251
            A+  S  P +   L  + + +ALD +DG++ARRL+Q+S+ GA LD+  DNV R  +W       +RL     L  +VEW   +          G HWK    A PR VQ   +N FR  LG+W +  L   P
Sbjct:   24 AWAASETPSVFVPL--YSVFIALDGVDGWLARRLDQSSRFGAWLDVVVDNVGRGMLW-------SRLFKWGWLVSTVEWCVFVCN----HNARGDHWKDSFAASPRFVQAVMANGFRTPLGLWVVSGLHCLP 142          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_024113856.1 (uncharacterized protein LOC112136403 isoform X2 [Oryzias melastigma])

HSP 1 Score: 77.0 bits (188), Expect = 1.000e-10
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 0
Query:  129 LAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAPSTPCSSMQSPRLATW 266
            +A L +++++ ALD +DG++ARRL Q S+ GA LD+  DN+ R  +W       +RL     L  ++EW   +          G  WK   D+ PRL++   +N F   LG+W +  L L P    +  ++  L  W
Sbjct:   32 VAFLWLYLVSAALDGVDGWLARRLRQRSRFGAWLDVVVDNLSRGMLW-------SRLFEWGWLVSAMEWCAFVCN----HSSRGEQWKASFDSSPRLIRAIMANGFYTPLGLWVVSGLHLLPVWLYACQEAIDLPLW 157          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_024113855.1 (uncharacterized protein LOC112136403 isoform X1 [Oryzias melastigma])

HSP 1 Score: 77.0 bits (188), Expect = 1.000e-10
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 0
Query:  129 LAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAPSTPCSSMQSPRLATW 266
            +A L +++++ ALD +DG++ARRL Q S+ GA LD+  DN+ R  +W       +RL     L  ++EW   +          G  WK   D+ PRL++   +N F   LG+W +  L L P    +  ++  L  W
Sbjct:   54 VAFLWLYLVSAALDGVDGWLARRLRQRSRFGAWLDVVVDNLSRGMLW-------SRLFEWGWLVSAMEWCAFVCN----HSSRGEQWKASFDSSPRLIRAIMANGFYTPLGLWVVSGLHLLPVWLYACQEAIDLPLW 179          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: XP_020504690.1 (uncharacterized protein LOC109995351 [Labrus bergylta])

HSP 1 Score: 76.3 bits (186), Expect = 1.800e-10
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0
Query:  132 LLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAP 251
            +  + I++ALD +DG++ARRL QTS+ GA LD+  DNV R  +W       + L     L  +VEW   +          G HWK    + PRL++    N FR  LG+W +  L   P
Sbjct:   35 IFFYSISIALDGVDGWLARRLGQTSRFGAWLDVVVDNVGRGMLW-------SLLFKWGWLMSAVEWCVFVCN----HNARGDHWKNSFSSSPRLIRAIMDNGFRTPLGLWVVSGLHCLP 142          
BLAST of NO24G00890 vs. NCBI_GenBank
Match: ELT87632.1 (hypothetical protein CAPTEDRAFT_132044, partial [Capitella teleta])

HSP 1 Score: 75.5 bits (184), Expect = 3.000e-10
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 0
Query:  129 LAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAP 251
            L ++ ++  +  LD++DG++AR+LNQTS  GA  D+  DN+ R  +W        R      L  S+EW T   T      + G  WK +   DP LV+   +NNFRN  G+  +GSL + P
Sbjct:   22 LLSISLYCSSAFLDAVDGFLARKLNQTSAFGAWFDVVIDNLGRGMIW-------CRTYHIGYLVSSLEWMTFACT-----HQRGASWKGVNQRDPWLVRAVMANNFRNLCGVMSVGSLHVLP 131          
The following BLAST results are available for this feature:
BLAST of NO24G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853569.12.200e-4561.76CDP-diacylglycerol-inositol 3-phosphatidyltransfer... [more]
EWM21096.11.300e-3456.44CDP-alcohol phosphatidyltransferase [Nannochlorops... [more]
XP_005838811.13.400e-2242.25hypothetical protein GUITHDRAFT_102442 [Guillardia... [more]
XP_002177371.17.600e-2247.01predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_008306892.16.100e-1134.45PREDICTED: uncharacterized protein LOC103377748 [C... [more]
XP_011617280.17.900e-1135.61PREDICTED: uncharacterized protein LOC105418711 [T... [more]
XP_024113856.11.000e-1031.39uncharacterized protein LOC112136403 isoform X2 [O... [more]
XP_024113855.11.000e-1031.39uncharacterized protein LOC112136403 isoform X1 [O... [more]
XP_020504690.11.800e-1035.29uncharacterized protein LOC109995351 [Labrus bergy... [more]
ELT87632.13.000e-1035.25hypothetical protein CAPTEDRAFT_132044, partial [C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004850NSK004850Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00890.1NO24G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558460gene_7318Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101646g1gene9326Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00890.1NO24G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00890 ID=NO24G00890|Name=NO24G00890|organism=Nannochloropsis oceanica|type=gene|length=855bp
ATGGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGT
GCTGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCT
TTTACGGCCTGTCTATCGTTGCCCACACGGTGACGCGGCAACAGGAAGAT
GCCCGGCATGCAGCACACGACGGCGGGTCATCTTGCTCGGTGCAGGCCAT
GATGCAGACTGCCACCTTTTACGCCACGCAAGTCAGCAATACGGGCTTGT
TACCGCATGCCGCCAACACTCTCCTAGGTAAGGGGTTGGACCATCTTTCC
GCCGCCCTTGTAGATGATGGTAACCGGCAGAAGGCCAATAACAGCAATGG
GACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCGGCTCTGCTGG
TGTTTGTTATCAATGTCGCCTTAGATTCCTTGGATGGATATGTAGCTAGG
CGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACATTTTCGCTGA
CAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTGCTTGACGCCC
GCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTGGGCCACACTC
TTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGACACTGGAAAAT
GCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTCTCGAACAACT
TCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTTTCTCGCCCCC
TCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCCACATGGGAATC
ACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGGCAAGATGGGGG
ATTAG
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protein sequence of NO24G00890.1

>NO24G00890.1-protein ID=NO24G00890.1-protein|Name=NO24G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MADSPQHLRPASTRLPVLLYIPNLICYSRLVLSFYGLSIVAHTVTRQQED
ARHAAHDGGSSCSVQAMMQTATFYATQVSNTGLLPHAANTLLGKGLDHLS
AALVDDGNRQKANNSNGTAFLRSAEPDLLAALLVFVINVALDSLDGYVAR
RLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATL
LATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAP
STPCSSMQSPRLATWESPVYKWREEGTDGGKMGD*
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Synonyms
Publications