NO24G00890.1, NO24G00890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00890.1
Unique NameNO24G00890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr24:245452..246306 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:245452..246306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00890.1 vs.
Match: XP_005853569.1 (CDP-diacylglycerol-inositol 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526]; EKU22790.1 CDP-diacylglycerol-inositol 3-phosphatidyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 192.2 bits (487), Expect = 2.200e-45
Identity = 105/170 (61.76%), Postives = 125/170 (73.53%), Query Frame = 0 
Query:   71 ATFYATQVS-NTGLLPHAANTLLGKGLDHLSAALVDDGNRQKANNSNGTAFLRSAEPDLLAALLVFVINVALDSLDGYVARRLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATLLATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALG 240
            AT YA      TGLL   A TLLGK L   S+AL+ D  R +A ++  T  L + EPDLLAAL+VF+   ALD LDG  ARR+ Q S+LGA+LD+ ADNVLR CMWVSSALLDAR ALPAL+C+SVEW TLLA+QL+  RE GRHWK LR ++P +V+YFFSNNFRN LG
Sbjct:    2 ATHYAAHAGYTTGLLAPIATTLLGKALAQASSALLRDMER-RAGSTGETEALPTVEPDLLAALVVFLAAGALDLLDGVAARRMKQCSRLGALLDVVADNVLRGCMWVSSALLDARTALPALICISVEWLTLLASQLLQHREQGRHWKKLRTSEPWVVRYFFSNNFRNVLG 170
The following BLAST results are available for this feature:
BLAST of NO24G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853569.12.200e-4561.76CDP-diacylglycerol-inositol 3-phosphatidyltransfer... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00890NO24G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00890.1NO24G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00890.1.cds1NO24G00890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00890.1 ID=NO24G00890.1|Name=NO24G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGT
GCTGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCT
TTTACGGCCTGTCTATCGTTGCCCACACGGTGACGCGGCAACAGGAAGAT
GCCCGGCATGCAGCACACGACGGCGGGTCATCTTGCTCGGTGCAGGCCAT
GATGCAGACTGCCACCTTTTACGCCACGCAAGTCAGCAATACGGGCTTGT
TACCGCATGCCGCCAACACTCTCCTAGGTAAGGGGTTGGACCATCTTTCC
GCCGCCCTTGTAGATGATGGTAACCGGCAGAAGGCCAATAACAGCAATGG
GACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCGGCTCTGCTGG
TGTTTGTTATCAATGTCGCCTTAGATTCCTTGGATGGATATGTAGCTAGG
CGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACATTTTCGCTGA
CAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTGCTTGACGCCC
GCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTGGGCCACACTC
TTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGACACTGGAAAAT
GCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTCTCGAACAACT
TCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTTTCTCGCCCCC
TCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCCACATGGGAATC
ACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGGCAAGATGGGGG
ATTAG
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protein sequence of NO24G00890.1

>NO24G00890.1-protein ID=NO24G00890.1-protein|Name=NO24G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MADSPQHLRPASTRLPVLLYIPNLICYSRLVLSFYGLSIVAHTVTRQQED
ARHAAHDGGSSCSVQAMMQTATFYATQVSNTGLLPHAANTLLGKGLDHLS
AALVDDGNRQKANNSNGTAFLRSAEPDLLAALLVFVINVALDSLDGYVAR
RLNQTSQLGAMLDIFADNVLRSCMWVSSALLDARLALPALLCLSVEWATL
LATQLVVQREDGRHWKMLRDADPRLVQYFFSNNFRNALGMWGIGSLFLAP
STPCSSMQSPRLATWESPVYKWREEGTDGGKMGD*
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mRNA from alignment at chr24:245452..246306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00890.1 ID=NO24G00890.1|Name=NO24G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at chr24:245452..246306- (Nannochloropsis oceanica)
ATGGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGT
GCTGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCT
TTTACGGCCTGTCTATCGTTGCCCACACGGTGACGCGGCAACAGGAAGAT
GCCCGGCATGCAGCACACGACGGCGGGTCATCTTGCTCGGTGCAGGCCAT
GATGCAGACTGCCACCTTTTACGCCACGCAAGTCAGCAATACGGGCTTGT
TACCGCATGCCGCCAACACTCTCCTAGGTAAGGGGTTGGACCATCTTTCC
GCCGCCCTTGTAGATGATGGTAACCGGCAGAAGGCCAATAACAGCAATGG
GACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCGGCTCTGCTGG
TGTTTGTTATCAATGTCGCCTTAGATTCCTTGGATGGATATGTAGCTAGG
CGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACATTTTCGCTGA
CAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTGCTTGACGCCC
GCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTGGGCCACACTC
TTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGACACTGGAAAAT
GCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTCTCGAACAACT
TCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTTTCTCGCCCCC
TCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCCACATGGGAATC
ACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGGCAAGATGGGGG
ATTAG
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Coding sequence (CDS) from alignment at chr24:245452..246306-

>NO24G00890.1 ID=NO24G00890.1|Name=NO24G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr24:245452..246306- (Nannochloropsis oceanica)
ATGGCTGACAGCCCTCAGCACCTACGGCCCGCGTCTACCCGGCTCCCCGT
GCTGTTATACATCCCCAATTTAATTTGCTACAGTCGACTGGTACTTAGCT
TTTACGGCCTGTCTATCGTTGCCCACACGGTGACGCGGCAACAGGAAGAT
GCCCGGCATGCAGCACACGACGGCGGGTCATCTTGCTCGGTGCAGGCCAT
GATGCAGACTGCCACCTTTTACGCCACGCAAGTCAGCAATACGGGCTTGT
TACCGCATGCCGCCAACACTCTCCTAGGTAAGGGGTTGGACCATCTTTCC
GCCGCCCTTGTAGATGATGGTAACCGGCAGAAGGCCAATAACAGCAATGG
GACGGCTTTCCTGCGGAGCGCTGAACCGGACTTGCTGGCGGCTCTGCTGG
TGTTTGTTATCAATGTCGCCTTAGATTCCTTGGATGGATATGTAGCTAGG
CGCCTGAATCAGACATCTCAGCTAGGTGCGATGCTTGACATTTTCGCTGA
CAACGTTCTGAGGAGCTGTATGTGGGTATCGTCGGCACTGCTTGACGCCC
GCCTGGCTCTCCCTGCTCTGCTTTGCCTCTCTGTTGAGTGGGCCACACTC
TTGGCAACGCAACTGGTAGTGCAGCGGGAGGACGGCCGACACTGGAAAAT
GCTACGGGATGCAGATCCACGCCTGGTGCAATATTTCTTCTCGAACAACT
TCCGGAATGCGCTTGGGATGTGGGGCATTGGCAGCCTGTTTCTCGCCCCC
TCTACCCCTTGCTCCTCCATGCAGTCCCCGCGCTTGGCCACATGGGAATC
ACCGGTTTACAAATGGAGGGAAGAGGGGACAGATGGGGGCAAGATGGGGG
ATTAG
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Synonyms
Publications