NO24G00820, NO24G00820 (gene) Nannochloropsis oceanica

Overview
NameNO24G00820
Unique NameNO24G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr24:233165..233935 +

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Properties
Property NameValue
DescriptionXylose isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:233165..233935 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0009045xylose isomerase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036237Xyl_isomerase-like_sf
IPR001998Xylose_isomerase
Homology
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: EWM21104.1 (xylose isomerase [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 7.200e-94
Identity = 164/197 (83.25%), Postives = 178/197 (90.36%), Query Frame = 0 
Query:    8 EAAHYFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            + AHYF+  G+P+KIP+ G +S+N LAFKYY+E Q+V+GKSMR+WLRFSVCYWHTMRGVG DPFGGGTI RPWEDGTD L+NA RRLRVAFEFMKRL VPFWTFHDRDIAPEGATLAES KLLDAVVDLA ELQ STGI+CLWGTANLFST+RYMNGASTNPDAHVFAYAAAQVKKVMEVT RLGGQ LVFWGG  G
Sbjct:  102 DVAHYFDDEGIPAKIPYGGTSSRNHLAFKYYDEDQIVRGKSMREWLRFSVCYWHTMRGVGLDPFGGGTISRPWEDGTDGLENAKRRLRVAFEFMKRLGVPFWTFHDRDIAPEGATLAESGKLLDAVVDLAVELQSSTGISCLWGTANLFSTRRYMNGASTNPDAHVFAYAAAQVKKVMEVTHRLGGQNLVFWGGREG 298
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: WP_013109552.1 (xylose isomerase [Planctopirus limnophila] >ADG67121.1 xylose isomerase [Planctopirus limnophila DSM 3776])

HSP 1 Score: 262.7 bits (670), Expect = 9.800e-67
Identity = 121/193 (62.69%), Postives = 153/193 (79.27%), Query Frame = 0 
Query:   12 YFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            YF ++   SKI +EG  SKNPLAFK+YN  + ++G+SM+D LR+SV YWHT RG G+DPFGG T+ +PW+DGT+S+ NA++R+ VAFEF+++L  PF+ FHDRD+APEGATLAESNK LDAVV   +E Q+ TGI  LWGTANLFS  RYM+GA+T+P+A VFAYA AQVKK +EVT  LGG+  VFWGG  G
Sbjct:    3 YFPEI---SKIVYEGPKSKNPLAFKHYNADEQIEGQSMKDLLRYSVAYWHTFRGTGSDPFGGATLQKPWDDGTESVANAIKRVDVAFEFVEKLGAPFYCFHDRDVAPEGATLAESNKNLDAVVARLKEKQLETGIKLLWGTANLFSHPRYMHGAATSPNADVFAYACAQVKKALEVTHELGGENYVFWGGREG 192
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: WP_068852364.1 (xylose isomerase [Planctopirus sp. JC280] >ODA28736.1 xylose isomerase [Planctopirus sp. JC280])

HSP 1 Score: 261.5 bits (667), Expect = 2.200e-66
Identity = 121/193 (62.69%), Postives = 152/193 (78.76%), Query Frame = 0 
Query:   12 YFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            YF ++   SKI +EG  SKNPLAFK+YN  + ++G+SM+D LR+SV YWHT RG G+DPFGG T+ +PW+DGT+S+ NA++R+ VAFEF+++L  PF+ FHDRD+APEGATLAESNK LDAVV   +E Q  TGI  LWGTANLFS  RYM+GA+T+P+A VFAYA AQVKK +EVT  LGG+  VFWGG  G
Sbjct:    3 YFPEI---SKIVYEGPKSKNPLAFKHYNADEQIEGQSMKDLLRYSVAYWHTFRGTGSDPFGGATLQKPWDDGTESVANAIKRVDVAFEFVEKLGAPFYCFHDRDVAPEGATLAESNKNLDAVVARLKEKQQETGIKLLWGTANLFSHPRYMHGAATSPNADVFAYACAQVKKALEVTHELGGENYVFWGGREG 192
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: XP_019645181.1 (PREDICTED: xylose isomerase-like [Branchiostoma belcheri])

HSP 1 Score: 259.6 bits (662), Expect = 8.300e-66
Identity = 120/178 (67.42%), Postives = 140/178 (78.65%), Query Frame = 0 
Query:   27 AASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            A  ++ L FK+YN S++V GKSM +WLRFSVCYWHT RG GADPFG  T+ RPWEDGTDS++NA RRL  AFEF  +L V +WTFHDRDIAPEG  LAE+N+ LD VVDLA +LQ  TG+  LWGT NLF+  RYMNGA+TNPDAH+ A+AAAQVKK +EVT RLGGQ  VFWGG  G
Sbjct:   38 AGPEDVLCFKHYNASEIVYGKSMEEWLRFSVCYWHTFRGTGADPFGFPTLHRPWEDGTDSMENAKRRLGAAFEFFTKLGVKYWTFHDRDIAPEGNDLAETNRNLDEVVDLAVKLQGETGMKLLWGTCNLFANPRYMNGAATNPDAHIVAHAAAQVKKGLEVTKRLGGQNFVFWGGREG 215
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: XP_002591810.1 (hypothetical protein BRAFLDRAFT_123545 [Branchiostoma floridae] >EEN47821.1 hypothetical protein BRAFLDRAFT_123545 [Branchiostoma floridae])

HSP 1 Score: 258.1 bits (658), Expect = 2.400e-65
Identity = 118/178 (66.29%), Postives = 141/178 (79.21%), Query Frame = 0 
Query:   27 AASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            A  ++ L FK+YN S++V GKSM +WLRFSVC+WHT RG GADPFG  T+ RPWEDG+DS++NA RRL+ AFEF  +L V +WTFHDRDIAPEG  LAE+N+ LD VVDLA +LQ  TG+  LWGT NLF+  RYMNGA+TNPDAH+ A+AAAQVKK +EVT RLGGQ  VFWGG  G
Sbjct:   38 AGPEDVLCFKHYNASEIVYGKSMEEWLRFSVCFWHTFRGTGADPFGFPTLHRPWEDGSDSMENAKRRLKAAFEFFTKLGVKYWTFHDRDIAPEGNDLAETNRNLDEVVDLAVKLQDETGMKLLWGTCNLFANPRYMNGAATNPDAHIVAHAAAQVKKGLEVTKRLGGQNFVFWGGREG 215
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: OJV00036.1 (xylose isomerase [Verrucomicrobia bacterium 61-8])

HSP 1 Score: 256.9 bits (655), Expect = 5.400e-65
Identity = 116/187 (62.03%), Postives = 144/187 (77.01%), Query Frame = 0 
Query:   18 LPSKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            +PS IP+EG AS NPLAFK+Y+ ++M+ G+++ + LRFS+ YWH  RG G+DPFG GTI RPWE G+D +  A +R+  AFEF +++  PFW FHDRDIAPEG++LAESNK LDA+V    ELQ +TG+  LWGTANLFS  RYM GA+TNPDA +FAYAAAQVKK ME TL LGG+  VFWGG  G
Sbjct:    7 VPSPIPYEGPASLNPLAFKFYDPTEMIDGRTLSEHLRFSIAYWHAFRGTGSDPFGPGTIVRPWESGSDPVSIAKKRMDAAFEFFEKIRAPFWCFHDRDIAPEGSSLAESNKHLDALVAHGGELQKATGVKLLWGTANLFSNPRYMCGAATNPDASIFAYAAAQVKKAMEATLELGGENYVFWGGREG 193
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: OWK43007.1 (Xylose isomerase [Fimbriiglobus ruber])

HSP 1 Score: 256.9 bits (655), Expect = 5.400e-65
Identity = 119/185 (64.32%), Postives = 147/185 (79.46%), Query Frame = 0 
Query:   20 SKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            SKI +EG  SKNPLAF++YN  ++V+GKSM+D LRF+V YWHT RG G+DPFG GT  RPWEDGTDS+D A++R+RVAFEFM++L  PF+ FHDRD++PEG TL +SNK LDAVV   +E Q  TGI  LWGTANLFS  R+M+GAST+ +A VFA++AAQVKK +EVT  LGG+  VFWGG  G
Sbjct:   51 SKIAYEGPDSKNPLAFRHYNPDELVEGKSMKDHLRFAVAYWHTFRGTGSDPFGPGTAVRPWEDGTDSVDMAVKRVRVAFEFMEKLGCPFYCFHDRDVSPEGKTLTDSNKNLDAVVKALKEEQQRTGIKLLWGTANLFSNPRFMHGASTSCNADVFAFSAAQVKKALEVTKELGGENYVFWGGREG 235
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: WP_088253924.1 (xylose isomerase [Fimbriiglobus ruber])

HSP 1 Score: 256.9 bits (655), Expect = 5.400e-65
Identity = 119/185 (64.32%), Postives = 147/185 (79.46%), Query Frame = 0 
Query:   20 SKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            SKI +EG  SKNPLAF++YN  ++V+GKSM+D LRF+V YWHT RG G+DPFG GT  RPWEDGTDS+D A++R+RVAFEFM++L  PF+ FHDRD++PEG TL +SNK LDAVV   +E Q  TGI  LWGTANLFS  R+M+GAST+ +A VFA++AAQVKK +EVT  LGG+  VFWGG  G
Sbjct:    8 SKIAYEGPDSKNPLAFRHYNPDELVEGKSMKDHLRFAVAYWHTFRGTGSDPFGPGTAVRPWEDGTDSVDMAVKRVRVAFEFMEKLGCPFYCFHDRDVSPEGKTLTDSNKNLDAVVKALKEEQQRTGIKLLWGTANLFSNPRFMHGASTSCNADVFAFSAAQVKKALEVTKELGGENYVFWGGREG 192
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: XP_004356776.1 (xylose isomerase [Acanthamoeba castellanii str. Neff] >ELR24876.1 xylose isomerase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 256.1 bits (653), Expect = 9.100e-65
Identity = 121/196 (61.73%), Postives = 145/196 (73.98%), Query Frame = 0 
Query:    9 AAHYFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            A  YF+ +   SKIPFEG  S NPLAFKYY   Q+V G+ M+DWLRFSVCYWHT RG GAD FG GT  RPW+DGT+SL++ L+ + V FEF+++L V ++ FHDRDIAPEGATL E+NK L+ V    ++    TGI  LWGTANLFS  RYMNGASTNPD HVFAYAAAQVKK M+++  LG +  VFWGG  G
Sbjct:    2 ATEYFKGI---SKIPFEGPESVNPLAFKYYRPDQVVAGRPMKDWLRFSVCYWHTWRGTGADMFGPGTYCRPWDDGTNSLESYLKLVDVNFEFLQKLGVEYFCFHDRDIAPEGATLEETNKNLETVAAHIKKRMQETGIKLLWGTANLFSNPRYMNGASTNPDTHVFAYAAAQVKKCMDISKELGAENYVFWGGREG 194
[Close]
BLAST of NO24G00820 vs. NCBI_GenBank
Match: ELU13203.1 (hypothetical protein CAPTEDRAFT_149382 [Capitella teleta])

HSP 1 Score: 255.8 bits (652), Expect = 1.200e-64
Identity = 122/199 (61.31%), Postives = 149/199 (74.87%), Query Frame = 0 
Query:    7 NEAAHYFEKVGLPSKIPFEG-AASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            ++   +F+ +G   KIPF+  A  ++ + FK+YN SQ+V GK+M +W RFSVCYWHT RGVG DPFG GTI R WED +DS++NA RR+RVAFEFM +L V ++ FHDRDIAPEG  LAESN+ LDA+VDLA +LQ  TGI  LW T NLFS  RYMNGASTNPDAHV AYAAA +KK +EV  +LG +  VFWGG  G
Sbjct:    4 SDKQEFFKGIG---KIPFKADAGPEDTMVFKHYNASQVVHGKTMEEWCRFSVCYWHTFRGVGLDPFGAGTIEREWEDESDSVENAKRRMRVAFEFMAKLGVKYYCFHDRDIAPEGKDLAESNRNLDALVDLAAQLQKETGIKLLWATCNLFSHPRYMNGASTNPDAHVVAYAAAALKKGLEVAHKLGAENYVFWGGREG 199
The following BLAST results are available for this feature:
BLAST of NO24G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21104.17.200e-9483.25xylose isomerase [Nannochloropsis gaditana][more]
WP_013109552.19.800e-6762.69xylose isomerase [Planctopirus limnophila] >ADG671... [more]
WP_068852364.12.200e-6662.69xylose isomerase [Planctopirus sp. JC280] >ODA2873... [more]
XP_019645181.18.300e-6667.42PREDICTED: xylose isomerase-like [Branchiostoma be... [more]
XP_002591810.12.400e-6566.29hypothetical protein BRAFLDRAFT_123545 [Branchiost... [more]
OJV00036.15.400e-6562.03xylose isomerase [Verrucomicrobia bacterium 61-8][more]
OWK43007.15.400e-6564.32Xylose isomerase [Fimbriiglobus ruber][more]
WP_088253924.15.400e-6564.32xylose isomerase [Fimbriiglobus ruber][more]
XP_004356776.19.100e-6561.73xylose isomerase [Acanthamoeba castellanii str. Ne... [more]
ELU13203.11.200e-6461.31hypothetical protein CAPTEDRAFT_149382 [Capitella ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004845NSK004845Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00820.1NO24G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598209gene_7313Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g45gene9321Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00820.1NO24G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00820 ID=NO24G00820|Name=NO24G00820|organism=Nannochloropsis oceanica|type=gene|length=771bp
ATGCCCGGCCACGATGGCAACGAGGCGGCGCACTACTTCGAAAAGGTGGG
ATTGCCGTCCAAGATTCCTTTCGAAGGGGCGGCGTCCAAGAATCCGTTGG
CGTTCAAATACTACAATGAGAGCCAGATGGTGCAAGGCAAGAGCATGCGG
GACTGGCTTCGCTTCAGCGTCTGCTATTGGCACACCATGCGAGGGGTAGG
CGCCGATCCATTCGGTGGTGGCACCATTGGTCGGCCGTGGGAGGATGGGA
CTGATAGCCTAGACAATGCCTTGCGGCGTCTCCGCGTGGCCTTTGAGTTT
ATGAAGCGCTTGTGCGTGCCCTTCTGGACCTTTCATGACCGgtaagcgtg
tacggaaaagagtggatagaggatgggaaacagatatgttaaacatcgga
tggagatcatagtctacgaacgaatgaagtagctcatggctgttcgtcgc
cacgctttccacaattccctttctcctacaaaaagCGATATCGCCCCCGA
GGGCGCCACTCTGGCTGAGTCGAACAAGCTTCTGGACGCGGTCGTAGACC
TTGCGGAGGAGCTGCAGGTGAGCACGGGCATCACATGTTTGTGGGGAACG
GCCAATTTGTTTAGTACCAAGAGGTATATGAACGGCGCGTCGACCAACCC
GGACGCGCACGTCTTCGCCTATGCCGCGGCCCAGGTGAAGAAGGTGATGG
AGGTGACATTGCGGCTGGGCGGACAGTGCCTCGTGTTTTGGGGGGGCGAG
AGGGGTACCAAAGCTTGTTGA
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protein sequence of NO24G00820.1

>NO24G00820.1-protein ID=NO24G00820.1-protein|Name=NO24G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MPGHDGNEAAHYFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMR
DWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEF
MKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLW
GTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWG
GERGTKAC*
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Synonyms
Publications