NO24G00820.1, NO24G00820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00820.1
Unique NameNO24G00820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length627
Alignment locationchr24:233165..233935 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:233165..233935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00820.1 vs.
Match: EWM21104.1 (xylose isomerase [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 7.200e-94
Identity = 164/197 (83.25%), Postives = 178/197 (90.36%), Query Frame = 0 
Query:    8 EAAHYFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMRDWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEFMKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLWGTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWGGERG 205
            + AHYF+  G+P+KIP+ G +S+N LAFKYY+E Q+V+GKSMR+WLRFSVCYWHTMRGVG DPFGGGTI RPWEDGTD L+NA RRLRVAFEFMKRL VPFWTFHDRDIAPEGATLAES KLLDAVVDLA ELQ STGI+CLWGTANLFST+RYMNGASTNPDAHVFAYAAAQVKKVMEVT RLGGQ LVFWGG  G
Sbjct:  102 DVAHYFDDEGIPAKIPYGGTSSRNHLAFKYYDEDQIVRGKSMREWLRFSVCYWHTMRGVGLDPFGGGTISRPWEDGTDGLENAKRRLRVAFEFMKRLGVPFWTFHDRDIAPEGATLAESGKLLDAVVDLAVELQSSTGISCLWGTANLFSTRRYMNGASTNPDAHVFAYAAAQVKKVMEVTHRLGGQNLVFWGGREG 298
The following BLAST results are available for this feature:
BLAST of NO24G00820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21104.17.200e-9483.25xylose isomerase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00820NO24G00820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00820.1NO24G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00820.1.cds1NO24G00820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00820.1.cds2NO24G00820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00820.1 ID=NO24G00820.1|Name=NO24G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=627bp
ATGCCCGGCCACGATGGCAACGAGGCGGCGCACTACTTCGAAAAGGTGGG
ATTGCCGTCCAAGATTCCTTTCGAAGGGGCGGCGTCCAAGAATCCGTTGG
CGTTCAAATACTACAATGAGAGCCAGATGGTGCAAGGCAAGAGCATGCGG
GACTGGCTTCGCTTCAGCGTCTGCTATTGGCACACCATGCGAGGGGTAGG
CGCCGATCCATTCGGTGGTGGCACCATTGGTCGGCCGTGGGAGGATGGGA
CTGATAGCCTAGACAATGCCTTGCGGCGTCTCCGCGTGGCCTTTGAGTTT
ATGAAGCGCTTGTGCGTGCCCTTCTGGACCTTTCATGACCGCGATATCGC
CCCCGAGGGCGCCACTCTGGCTGAGTCGAACAAGCTTCTGGACGCGGTCG
TAGACCTTGCGGAGGAGCTGCAGGTGAGCACGGGCATCACATGTTTGTGG
GGAACGGCCAATTTGTTTAGTACCAAGAGGTATATGAACGGCGCGTCGAC
CAACCCGGACGCGCACGTCTTCGCCTATGCCGCGGCCCAGGTGAAGAAGG
TGATGGAGGTGACATTGCGGCTGGGCGGACAGTGCCTCGTGTTTTGGGGG
GGCGAGAGGGGTACCAAAGCTTGTTGA
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protein sequence of NO24G00820.1

>NO24G00820.1-protein ID=NO24G00820.1-protein|Name=NO24G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MPGHDGNEAAHYFEKVGLPSKIPFEGAASKNPLAFKYYNESQMVQGKSMR
DWLRFSVCYWHTMRGVGADPFGGGTIGRPWEDGTDSLDNALRRLRVAFEF
MKRLCVPFWTFHDRDIAPEGATLAESNKLLDAVVDLAEELQVSTGITCLW
GTANLFSTKRYMNGASTNPDAHVFAYAAAQVKKVMEVTLRLGGQCLVFWG
GERGTKAC*
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mRNA from alignment at chr24:233165..233935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00820.1 ID=NO24G00820.1|Name=NO24G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp|location=Sequence derived from alignment at chr24:233165..233935+ (Nannochloropsis oceanica)
ATGCCCGGCCACGATGGCAACGAGGCGGCGCACTACTTCGAAAAGGTGGG
ATTGCCGTCCAAGATTCCTTTCGAAGGGGCGGCGTCCAAGAATCCGTTGG
CGTTCAAATACTACAATGAGAGCCAGATGGTGCAAGGCAAGAGCATGCGG
GACTGGCTTCGCTTCAGCGTCTGCTATTGGCACACCATGCGAGGGGTAGG
CGCCGATCCATTCGGTGGTGGCACCATTGGTCGGCCGTGGGAGGATGGGA
CTGATAGCCTAGACAATGCCTTGCGGCGTCTCCGCGTGGCCTTTGAGTTT
ATGAAGCGCTTGTGCGTGCCCTTCTGGACCTTTCATGACCGGTAAGCGTG
TACGGAAAAGAGTGGATAGAGGATGGGAAACAGATATGTTAAACATCGGA
TGGAGATCATAGTCTACGAACGAATGAAGTAGCTCATGGCTGTTCGTCGC
CACGCTTTCCACAATTCCCTTTCTCCTACAAAAAGCGATATCGCCCCCGA
GGGCGCCACTCTGGCTGAGTCGAACAAGCTTCTGGACGCGGTCGTAGACC
TTGCGGAGGAGCTGCAGGTGAGCACGGGCATCACATGTTTGTGGGGAACG
GCCAATTTGTTTAGTACCAAGAGGTATATGAACGGCGCGTCGACCAACCC
GGACGCGCACGTCTTCGCCTATGCCGCGGCCCAGGTGAAGAAGGTGATGG
AGGTGACATTGCGGCTGGGCGGACAGTGCCTCGTGTTTTGGGGGGGCGAG
AGGGGTACCAAAGCTTGTTGA
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Coding sequence (CDS) from alignment at chr24:233165..233935+

>NO24G00820.1 ID=NO24G00820.1|Name=NO24G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr24:233165..233935+ (Nannochloropsis oceanica)
ATGCCCGGCCACGATGGCAACGAGGCGGCGCACTACTTCGAAAAGGTGGG
ATTGCCGTCCAAGATTCCTTTCGAAGGGGCGGCGTCCAAGAATCCGTTGG
CGTTCAAATACTACAATGAGAGCCAGATGGTGCAAGGCAAGAGCATGCGG
GACTGGCTTCGCTTCAGCGTCTGCTATTGGCACACCATGCGAGGGGTAGG
CGCCGATCCATTCGGTGGTGGCACCATTGGTCGGCCGTGGGAGGATGGGA
CTGATAGCCTAGACAATGCCTTGCGGCGTCTCCGCGTGGCCTTTGAGTTT
ATGAAGCGCTTGTGCGTGCCCTTCTGGACCTTTCATGACCGCGATATCGC
CCCCGAGGGCGCCACTCTGGCTGAGTCGAACAAGCTTCTGGACGCGGTCG
TAGACCTTGCGGAGGAGCTGCAGGTGAGCACGGGCATCACATGTTTGTGG
GGAACGGCCAATTTGTTTAGTACCAAGAGGTATATGAACGGCGCGTCGAC
CAACCCGGACGCGCACGTCTTCGCCTATGCCGCGGCCCAGGTGAAGAAGG
TGATGGAGGTGACATTGCGGCTGGGCGGACAGTGCCTCGTGTTTTGGGGG
GGCGAGAGGGGTACCAAAGCTTGTTGA
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Synonyms
Publications