NO24G00780, NO24G00780 (gene) Nannochloropsis oceanica

Overview
NameNO24G00780
Unique NameNO24G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2767
Alignment locationchr24:225156..227922 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:225156..227922 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Homology
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BLAST of NO24G00780 vs. NCBI_GenBank
Match: EWM21099.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 136.7 bits (343), Expect = 7.200e-29
Identity = 84/139 (60.43%), Postives = 94/139 (67.63%), Query Frame = 0 
Query:    1 MDPFSFLARVLALHHPIVDTPPSDSPTSTRERSNVLQQQRSH--SQHHPSPSSTIATAAYAAVLKLASELLSQEPGLLEGAVEALDRAPVHRITTRQYRRELHLVKGRERLEYTVLGTRDCSCQSFQLMQCRSLRPRVR 138
            MDP  FL+RVL L      +  S SP  + ER N   QQ      + H + S+ I   A +AVLKLASELL  EPG LEGAVEALDRAPV RI TRQYRR LHLVKGR+R EYTVL  RDCSCQSF +MQ RSLRPR +
Sbjct:    1 MDPILFLSRVLELQE--CPSSCSVSPFPSGERGNCTGQQDPQLVDEKHSTGSNEI---AQSAVLKLASELLYHEPGFLEGAVEALDRAPVRRIITRQYRRCLHLVKGRDRAEYTVLSGRDCSCQSFHIMQQRSLRPRCK 134
The following BLAST results are available for this feature:
BLAST of NO24G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21099.17.200e-2960.43conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004842NSK004842Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00780.1NO24G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00780.2NO24G00780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598201gene_7309Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g42gene9319Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00780.1NO24G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00780.2NO24G00780.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00780 ID=NO24G00780|Name=NO24G00780|organism=Nannochloropsis oceanica|type=gene|length=2767bp
AGGAGGAGGAGGAGGAGGAGGAGAAAGACAAGGAAGAGTGAGATGTGGTG
GGATCTACCGCCTGAATTATCGCAGTCACCGTTGCCTTCGACACATCCAC
CACAACATTATCATCACCTCCAACCACCCGCCTGCCTCGAACAATCCCCC
TTCTTCAATTCCCTCCTCCTCCTCCTCCCCCTCCCATCCTCCTCATCCTT
CCCCCTCTGTCTTCCTGAAATCTCCTCCTCCTCCCTCCGGTCCCCGATCC
GCGAACCTCTTGAGCCTGAACGTAACCTCTTTCGCTCCCTCTCCTCTCCT
ACCCTACTTTCCCCTCCACACCCTCCCCTCCTTCGATCGCCGTCATCATG
CCTCTCCCCCCTTCCCCTTCCTCCATAGTCCTCCGCCACCTTCTGTTGCC
CATGAGCCCGCCAGCAGTCCGATTCCTCCTCTCGGCGGTTGTGGTCGGAG
ACACTGTGGTGGAGAGAAGGAAGAAGGATATGACTGGATAAGGCAACGGC
CGTATGCATGCATGCAGACAAGACGGGCGTGCTTCTCTCATCCTCACTTC
TCTCTACTTACCTTCGGATGGTGTTGGCCAGAAAGTTCTTGTTTATAACG
GCCTTCTTCTGCATGGCGGGAGCGGTCACTGCATCACGCCTTCTGCTACG
GGCAGCGGTCGCGGCCTGTCATTAGGTGGTCCATATTGGGGAGTAACAAA
ACTACATTTCCTCGATCTTTTCCCATCCTCACCTCTGCCTGTCCATATCT
CTACTTACCTCGAGTGCAATGAGTCGAGCCACACAATCGTCTGAAGGCCG
GGCCAAGGAGGAGACTCGGGCCATAGTGCTCCGCACTAAAGCGTTAGCGC
TGATGCTACTTCTGCTGCTCGAAGTCGGGGATGGGGACTTTTTCATCATC
TTCCTCCCTGTGTGTATGTGGTATAAGGGGCACCGCAGTAAGGCGTTAGC
GCTGATGCTGCTTCTGCTGCTCGAAGTCGGGGATGGGGACTTTTTCATCA
GCTTCCTCAATGTGTGAATGTGGTAAAAAGGGCAATGAAAAAACCTCCCC
TCTCCTCCTGCTCTCCTCTCCCTTTCCAAGCAACACAAATCAATCAGCAA
GCCTCATCCACCTCACCGCTTACTCTATATCCTTTTAGACCCTACTGTAG
GTGCCTGTCATCATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCT
CCACCATCCCATCGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTA
GAGAGCGCAGCAACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCAT
CCTTCCCCATCCTCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAA
GCTGGCGTCGGAACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGG
TGGAGgtgtgtaaattgagagggggagtgaacgggggggtgggtgggaag
gcttgagatgccggacaagttcatggacacaccgcgcttcaccatcacac
caccagGCATTAGACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTA
CCGACGGGAATTGCACTTGGTGAAAGGgtacgtgttttacagggaagaga
agaagggagacgacagtgaggggaaatagaactgaagacatcatccgcta
acgcggacccgtcttcctctcctcctctcacgaatacagGCGGGAACGAC
TCGAATACACGGTGCTGGGCACCCGGGACTGCAGCTGTCAGAGCTTCCAA
CTAATGCAATGTCGTTCTCTTCGACCACGGGTTCGTGCTAGTGGATTTTC
TTCTTTCGTCGATTTACTATTTGTCTCTCTATTGAACGCACCTGGATGCT
TGGAGCTACCCCCCAATTTTCCATACATGCACAGACCTCCGAGCTCTGCT
CGTGTACATTCTCTCTTCCCTCTACTCTGTTGTTAGTTGCTCACAGTCCC
CTCCAACCACCCAACCGGCGTGCCGACACTTAGTGCAAGCACCTGCTGGC
CGTATGCCTGGCCCCCTTTCTTGGGCGCCTGGAGGAACGAGAGGTTAATG
ACGAGCTGTACGAGAGCTACGTCCGTCTCTAGAATGGAAGGTGGCGAAGG
AGGGAGGAAAGGGGGAGATCGGAGGGAGAAGGCAAACACCTTCCTTACTC
CCTGTCATGGCTGGCGATGGAACAGGAGGAGGAGGAGAATATGGAAGAGG
AAGACGTGTCGGGAAAGTGGTGGGAAGGGCAGGAGGTGGTACTGTGGTTT
GCCCGGCGGCGTAGCTGAGCGGTTCGTCCGTCTCTAGAGCAGCTGCGGTA
GCAAGGGCAAGGAGGTCGGTGGTAAAAATGGAGGTGTTGCTGCTGCTGAG
GGAACGAAGAAGGAGGAAGATGATGAGGTGGAGGAGAGTAGGAAAATGGG
TAATGGTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTG
CTGCTGCTGCTGTTGTTGTTGCCGAGGGCGAGGGGGAGGAGGAGGAGGAG
AAGGGGGATGGGCGCAGGAGGCGTAGCAGCATGCGGTGTCGAAGTAGGGG
GAAGGGGCCTCTTGCCGATGGAGGCGTCTGGGATAGGGTCAATGTAAATA
AGACATACATATGTCAATAGTAAGATACATGAACCAGTGGATAGAGACAG
AAAGATACGGTGTGCTCCAACCCCGAACGGCAATTCGGAAAGCAGAAGAA
AAGAGCGTGCATGTCAAGTCTGCACAGCGCTCTTGCCCGTGTATGTATTG
TGTCCTTGCTTTTCCCT
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protein sequence of NO24G00780.1

>NO24G00780.1-protein ID=NO24G00780.1-protein|Name=NO24G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MDPFSFLARVLALHHPIVDTPPSDSPTSTRERSNVLQQQRSHSQHHPSPS
STIATAAYAAVLKLASELLSQEPGLLEGAVEALDRAPVHRITTRQYRREL
HLVKGRERLEYTVLGTRDCSCQSFQLMQCRSLRPRCKHLLAVCLAPFLGR
LEEREVNDELYESYVRL*
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protein sequence of NO24G00780.2

>NO24G00780.2-protein ID=NO24G00780.2-protein|Name=NO24G00780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MDPFSFLARVLALHHPIVDTPPSDSPTSTRERSNVLQQQRSHSQHHPSPS
STIATAAYAAVLKLASELLSQEPGLLEGAVEALDRAPVHRITTRQYRREL
HLVKGRERLEYTVLGTRDCSCQSFQLMQCRSLRPRVRASGFSSFVDLLFV
SLLNAPGCLELPPNFPYMHRPPSSARVHSLFPLLCC*
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Synonyms
Publications