NO24G00780.2, NO24G00780.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00780.2
Unique NameNO24G00780.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2554
Alignment locationchr24:225156..227922 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:225156..227922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00780.2 vs.
Match: EWM21099.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 136.7 bits (343), Expect = 7.200e-29
Identity = 84/139 (60.43%), Postives = 94/139 (67.63%), Query Frame = 0 
Query:    1 MDPFSFLARVLALHHPIVDTPPSDSPTSTRERSNVLQQQRSH--SQHHPSPSSTIATAAYAAVLKLASELLSQEPGLLEGAVEALDRAPVHRITTRQYRRELHLVKGRERLEYTVLGTRDCSCQSFQLMQCRSLRPRVR 138
            MDP  FL+RVL L      +  S SP  + ER N   QQ      + H + S+ IA +A   VLKLASELL  EPG LEGAVEALDRAPV RI TRQYRR LHLVKGR+R EYTVL  RDCSCQSF +MQ RSLRPR +
Sbjct:    1 MDPILFLSRVLELQE--CPSSCSVSPFPSGERGNCTGQQDPQLVDEKHSTGSNEIAQSA---VLKLASELLYHEPGFLEGAVEALDRAPVRRIITRQYRRCLHLVKGRDRAEYTVLSGRDCSCQSFHIMQQRSLRPRCK 134
The following BLAST results are available for this feature:
BLAST of NO24G00780.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21099.17.200e-2960.43conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00780NO24G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00780.2NO24G00780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00780.2.cds1NO24G00780.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00780.2.cds2NO24G00780.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00780.2.cds3NO24G00780.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00780.2 ID=NO24G00780.2|Name=NO24G00780.2|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp
AGGAGGAGGAGGAGGAGGAGGAGAAAGACAAGGAAGAGTGAGATGTGGTG
GGATCTACCGCCTGAATTATCGCAGTCACCGTTGCCTTCGACACATCCAC
CACAACATTATCATCACCTCCAACCACCCGCCTGCCTCGAACAATCCCCC
TTCTTCAATTCCCTCCTCCTCCTCCTCCCCCTCCCATCCTCCTCATCCTT
CCCCCTCTGTCTTCCTGAAATCTCCTCCTCCTCCCTCCGGTCCCCGATCC
GCGAACCTCTTGAGCCTGAACGTAACCTCTTTCGCTCCCTCTCCTCTCCT
ACCCTACTTTCCCCTCCACACCCTCCCCTCCTTCGATCGCCGTCATCATG
CCTCTCCCCCCTTCCCCTTCCTCCATAGTCCTCCGCCACCTTCTGTTGCC
CATGAGCCCGCCAGCAGTCCGATTCCTCCTCTCGGCGGTTGTGGTCGGAG
ACACTGTGGTGGAGAGAAGGAAGAAGGATATGACTGGATAAGGCAACGGC
CGTATGCATGCATGCAGACAAGACGGGCGTGCTTCTCTCATCCTCACTTC
TCTCTACTTACCTTCGGATGGTGTTGGCCAGAAAGTTCTTGTTTATAACG
GCCTTCTTCTGCATGGCGGGAGCGGTCACTGCATCACGCCTTCTGCTACG
GGCAGCGGTCGCGGCCTGTCATTAGGTGGTCCATATTGGGGAGTAACAAA
ACTACATTTCCTCGATCTTTTCCCATCCTCACCTCTGCCTGTCCATATCT
CTACTTACCTCGAGTGCAATGAGTCGAGCCACACAATCGTCTGAAGGCCG
GGCCAAGGAGGAGACTCGGGCCATAGTGCTCCGCACTAAAGCGTTAGCGC
TGATGCTACTTCTGCTGCTCGAAGTCGGGGATGGGGACTTTTTCATCATC
TTCCTCCCTGTGTGTATGTGGTATAAGGGGCACCGCAGTAAGGCGTTAGC
GCTGATGCTGCTTCTGCTGCTCGAAGTCGGGGATGGGGACTTTTTCATCA
GCTTCCTCAATGTGTGAATGTGGTAAAAAGGGCAATGAAAAAACCTCCCC
TCTCCTCCTGCTCTCCTCTCCCTTTCCAAGCAACACAAATCAATCAGCAA
GCCTCATCCACCTCACCGCTTACTCTATATCCTTTTAGACCCTACTGTAG
GTGCCTGTCATCATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCT
CCACCATCCCATCGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTA
GAGAGCGCAGCAACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCAT
CCTTCCCCATCCTCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAA
GCTGGCGTCGGAACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGG
TGGAGGCATTAGACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTAC
CGACGGGAATTGCACTTGGTGAAAGGGCGGGAACGACTCGAATACACGGT
GCTGGGCACCCGGGACTGCAGCTGTCAGAGCTTCCAACTAATGCAATGTC
GTTCTCTTCGACCACGGGTTCGTGCTAGTGGATTTTCTTCTTTCGTCGAT
TTACTATTTGTCTCTCTATTGAACGCACCTGGATGCTTGGAGCTACCCCC
CAATTTTCCATACATGCACAGACCTCCGAGCTCTGCTCGTGTACATTCTC
TCTTCCCTCTACTCTGTTGTTAGTTGCTCACAGTCCCCTCCAACCACCCA
ACCGGCGTGCCGACACTTAGTGCAAGCACCTGCTGGCCGTATGCCTGGCC
CCCTTTCTTGGGCGCCTGGAGGAACGAGAGGTTAATGACGAGCTGTACGA
GAGCTACGTCCGTCTCTAGAATGGAAGGTGGCGAAGGAGGGAGGAAAGGG
GGAGATCGGAGGGAGAAGGCAAACACCTTCCTTACTCCCTGTCATGGCTG
GCGATGGAACAGGAGGAGGAGGAGAATATGGAAGAGGAAGACGTGTCGGG
AAAGTGGTGGGAAGGGCAGGAGGTGGTACTGTGGTTTGCCCGGCGGCGTA
GCTGAGCGGTTCGTCCGTCTCTAGAGCAGCTGCGGTAGCAAGGGCAAGGA
GGTCGGTGGTAAAAATGGAGGTGTTGCTGCTGCTGAGGGAACGAAGAAGG
AGGAAGATGATGAGGTGGAGGAGAGTAGGAAAATGGGTAATGGTACTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGT
TGTTGTTGCCGAGGGCGAGGGGGAGGAGGAGGAGGAGAAGGGGGATGGGC
GCAGGAGGCGTAGCAGCATGCGGTGTCGAAGTAGGGGGAAGGGGCCTCTT
GCCGATGGAGGCGTCTGGGATAGGGTCAATGTAAATAAGACATACATATG
TCAATAGTAAGATACATGAACCAGTGGATAGAGACAGAAAGATACGGTGT
GCTCCAACCCCGAACGGCAATTCGGAAAGCAGAAGAAAAGAGCGTGCATG
TCAAGTCTGCACAGCGCTCTTGCCCGTGTATGTATTGTGTCCTTGCTTTT
CCCT
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protein sequence of NO24G00780.2

>NO24G00780.2-protein ID=NO24G00780.2-protein|Name=NO24G00780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MDPFSFLARVLALHHPIVDTPPSDSPTSTRERSNVLQQQRSHSQHHPSPS
STIATAAYAAVLKLASELLSQEPGLLEGAVEALDRAPVHRITTRQYRREL
HLVKGRERLEYTVLGTRDCSCQSFQLMQCRSLRPRVRASGFSSFVDLLFV
SLLNAPGCLELPPNFPYMHRPPSSARVHSLFPLLCC*
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mRNA from alignment at chr24:225156..227922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00780.2 ID=NO24G00780.2|Name=NO24G00780.2|organism=Nannochloropsis oceanica|type=mRNA|length=2767bp|location=Sequence derived from alignment at chr24:225156..227922+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGAAAGACAAGGAAGAGTGAGATGTGGTG
GGATCTACCGCCTGAATTATCGCAGTCACCGTTGCCTTCGACACATCCAC
CACAACATTATCATCACCTCCAACCACCCGCCTGCCTCGAACAATCCCCC
TTCTTCAATTCCCTCCTCCTCCTCCTCCCCCTCCCATCCTCCTCATCCTT
CCCCCTCTGTCTTCCTGAAATCTCCTCCTCCTCCCTCCGGTCCCCGATCC
GCGAACCTCTTGAGCCTGAACGTAACCTCTTTCGCTCCCTCTCCTCTCCT
ACCCTACTTTCCCCTCCACACCCTCCCCTCCTTCGATCGCCGTCATCATG
CCTCTCCCCCCTTCCCCTTCCTCCATAGTCCTCCGCCACCTTCTGTTGCC
CATGAGCCCGCCAGCAGTCCGATTCCTCCTCTCGGCGGTTGTGGTCGGAG
ACACTGTGGTGGAGAGAAGGAAGAAGGATATGACTGGATAAGGCAACGGC
CGTATGCATGCATGCAGACAAGACGGGCGTGCTTCTCTCATCCTCACTTC
TCTCTACTTACCTTCGGATGGTGTTGGCCAGAAAGTTCTTGTTTATAACG
GCCTTCTTCTGCATGGCGGGAGCGGTCACTGCATCACGCCTTCTGCTACG
GGCAGCGGTCGCGGCCTGTCATTAGGTGGTCCATATTGGGGAGTAACAAA
ACTACATTTCCTCGATCTTTTCCCATCCTCACCTCTGCCTGTCCATATCT
CTACTTACCTCGAGTGCAATGAGTCGAGCCACACAATCGTCTGAAGGCCG
GGCCAAGGAGGAGACTCGGGCCATAGTGCTCCGCACTAAAGCGTTAGCGC
TGATGCTACTTCTGCTGCTCGAAGTCGGGGATGGGGACTTTTTCATCATC
TTCCTCCCTGTGTGTATGTGGTATAAGGGGCACCGCAGTAAGGCGTTAGC
GCTGATGCTGCTTCTGCTGCTCGAAGTCGGGGATGGGGACTTTTTCATCA
GCTTCCTCAATGTGTGAATGTGGTAAAAAGGGCAATGAAAAAACCTCCCC
TCTCCTCCTGCTCTCCTCTCCCTTTCCAAGCAACACAAATCAATCAGCAA
GCCTCATCCACCTCACCGCTTACTCTATATCCTTTTAGACCCTACTGTAG
GTGCCTGTCATCATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCT
CCACCATCCCATCGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTA
GAGAGCGCAGCAACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCAT
CCTTCCCCATCCTCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAA
GCTGGCGTCGGAACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGG
TGGAGGTGTGTAAATTGAGAGGGGGAGTGAACGGGGGGGTGGGTGGGAAG
GCTTGAGATGCCGGACAAGTTCATGGACACACCGCGCTTCACCATCACAC
CACCAGGCATTAGACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTA
CCGACGGGAATTGCACTTGGTGAAAGGGTACGTGTTTTACAGGGAAGAGA
AGAAGGGAGACGACAGTGAGGGGAAATAGAACTGAAGACATCATCCGCTA
ACGCGGACCCGTCTTCCTCTCCTCCTCTCACGAATACAGGCGGGAACGAC
TCGAATACACGGTGCTGGGCACCCGGGACTGCAGCTGTCAGAGCTTCCAA
CTAATGCAATGTCGTTCTCTTCGACCACGGGTTCGTGCTAGTGGATTTTC
TTCTTTCGTCGATTTACTATTTGTCTCTCTATTGAACGCACCTGGATGCT
TGGAGCTACCCCCCAATTTTCCATACATGCACAGACCTCCGAGCTCTGCT
CGTGTACATTCTCTCTTCCCTCTACTCTGTTGTTAGTTGCTCACAGTCCC
CTCCAACCACCCAACCGGCGTGCCGACACTTAGTGCAAGCACCTGCTGGC
CGTATGCCTGGCCCCCTTTCTTGGGCGCCTGGAGGAACGAGAGGTTAATG
ACGAGCTGTACGAGAGCTACGTCCGTCTCTAGAATGGAAGGTGGCGAAGG
AGGGAGGAAAGGGGGAGATCGGAGGGAGAAGGCAAACACCTTCCTTACTC
CCTGTCATGGCTGGCGATGGAACAGGAGGAGGAGGAGAATATGGAAGAGG
AAGACGTGTCGGGAAAGTGGTGGGAAGGGCAGGAGGTGGTACTGTGGTTT
GCCCGGCGGCGTAGCTGAGCGGTTCGTCCGTCTCTAGAGCAGCTGCGGTA
GCAAGGGCAAGGAGGTCGGTGGTAAAAATGGAGGTGTTGCTGCTGCTGAG
GGAACGAAGAAGGAGGAAGATGATGAGGTGGAGGAGAGTAGGAAAATGGG
TAATGGTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTG
CTGCTGCTGCTGTTGTTGTTGCCGAGGGCGAGGGGGAGGAGGAGGAGGAG
AAGGGGGATGGGCGCAGGAGGCGTAGCAGCATGCGGTGTCGAAGTAGGGG
GAAGGGGCCTCTTGCCGATGGAGGCGTCTGGGATAGGGTCAATGTAAATA
AGACATACATATGTCAATAGTAAGATACATGAACCAGTGGATAGAGACAG
AAAGATACGGTGTGCTCCAACCCCGAACGGCAATTCGGAAAGCAGAAGAA
AAGAGCGTGCATGTCAAGTCTGCACAGCGCTCTTGCCCGTGTATGTATTG
TGTCCTTGCTTTTCCCT
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Coding sequence (CDS) from alignment at chr24:225156..227922+

>NO24G00780.2 ID=NO24G00780.2|Name=NO24G00780.2|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr24:225156..227922+ (Nannochloropsis oceanica)
ATGGACCCCTTTTCGTTCCTGGCTCGCGTCCTCGCGCTCCACCATCCCAT
CGTCGACACCCCTCCCTCCGACTCGCCTACTTCTACTAGAGAGCGCAGCA
ACGTGCTCCAGCAGCAACGGTCGCACAGCCAACACCATCCTTCCCCATCC
TCTACCATTGCCACGGCCGCATATGCGGCTGTGCTCAAGCTGGCGTCGGA
ACTATTGTCTCAGGAGCCAGGATTATTGGAGGGTGCGGTGGAGGCATTAG
ACCGAGCTCCAGTGCACCGCATCACCACGCGCCAGTACCGACGGGAATTG
CACTTGGTGAAAGGGCGGGAACGACTCGAATACACGGTGCTGGGCACCCG
GGACTGCAGCTGTCAGAGCTTCCAACTAATGCAATGTCGTTCTCTTCGAC
CACGGGTTCGTGCTAGTGGATTTTCTTCTTTCGTCGATTTACTATTTGTC
TCTCTATTGAACGCACCTGGATGCTTGGAGCTACCCCCCAATTTTCCATA
CATGCACAGACCTCCGAGCTCTGCTCGTGTACATTCTCTCTTCCCTCTAC
TCTGTTGTTAG
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Synonyms
Publications