NO24G00720, NO24G00720 (gene) Nannochloropsis oceanica

Overview
NameNO24G00720
Unique NameNO24G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr24:216474..217148 +

Link to JBrowse

Properties
Property NameValue
DescriptionPoly-specific ribonuclease parn
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:216474..217148 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR006941RNase_CAF1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
[Close]
BLAST of NO24G00720 vs. NCBI_GenBank
Match: EWM21105.1 (poly -specific ribonuclease parn [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 7.800e-78
Identity = 151/228 (66.23%), Postives = 182/228 (79.82%), Query Frame = 0 
Query:    1 MGFKNKLQQLFPPIYDTKVLAKGLGVADSQGDTNLEGLYKSEGGAEVELEGGEGNGGAAHEAGHDAFMTGVVFASLLRRARSRVGEE----AVSGASVRSSNSMPSLAYAEEWAHKVFMRMTDVDTFELRNFKQVPDRSRVFHVRTQGTASLPLLQHRELREAFASLGPLQIKALGKHEAYVVFQDLTRPPPEVEMMKKLVVNLGSQAGGGLDIMTYEERRVALGILW 225
            MGFK K+Q  FP IYDTKVLAK LGV D  GDTNL GLY+ EGG  V LEG     GAAHEAGHDAFMTGV+F+SLLRR ++++ E       S + + S  SMPSLAYAE W++KVFMR+TDV++FELRNFKQ+PDR+RVFHVRT+ + +LP LQH +LR AF+SLG +QIKALGKHEAYVVF D+TRPPPEV  +K+LV + G++A  GL+I+TYEERRVALGILW
Sbjct:  382 MGFKAKVQHFFPSIYDTKVLAKSLGVTDEHGDTNLAGLYRKEGGGRVALEGVT---GAAHEAGHDAFMTGVIFSSLLRRIKAKLSENISDCGTSPSPLSSPCSMPSLAYAENWSNKVFMRLTDVESFELRNFKQIPDRTRVFHVRTRCSGALPHLQHHQLRRAFSSLGSVQIKALGKHEAYVVFHDITRPPPEVSELKELVSSSGAEADEGLEIVTYEERRVALGILW 606
[Close]
BLAST of NO24G00720 vs. NCBI_GenBank
Match: XP_009521153.1 (hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae] >EGZ25865.1 hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae])

HSP 1 Score: 64.7 bits (156), Expect = 4.200e-7
Identity = 67/242 (27.69%), Postives = 103/242 (42.56%), Query Frame = 0 
Query:    3 FKNKLQQLFPPIYDTKVLAKGLGVADSQGDTNLEGLYK----------------------SEGGAEVELEGGEGNGGAAHEAGHDAFMTGVVFASLLRR-ARSRVGEEAV--SGASVRSSNSMPSLAYAEEWAHKVFMRMTDVDTFELRNFKQVPDRSRVFHVRTQGTASLPLLQHRELREAFASLGPLQIKALGKHEAYVVFQDLTRPPPEVEMMKKLVVNLGSQAGGGLDIMTYEERRVA 220
            FK +L  LFP IYDTK +     + D    T L  L++                           + E +G E      HEAG DAFMT V F  LL   A+  + ++ V   G+S R    +  L   +   +++ + ++D    +L N  Q  DR+RV+ V    + +   +QH  + + F S    +I      +A+VV   LT P  E        VN  ++A  G++I TY+E   A
Sbjct:  332 FKTQLLGLFPTIYDTKHVTLRSPLGDKLKSTGLSSLFEYMRENVKPEPESLIPSDEHFDTYRQALKAEADGNESL--LCHEAGFDAFMTAVCFLGLLAHDAKGELPDQQVPKEGSSARLKVRLEEL---DSLKNQLNLMISDESFLDLGNVSQTIDRTRVYRV---SSTTKRRIQHVRMEDVFKSSKVQRIVRESDQDAFVV---LTEPAEE--------VNDETKAELGVNISTYDEHMAA 554
The following BLAST results are available for this feature:
BLAST of NO24G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21105.17.800e-7866.23poly -specific ribonuclease parn [Nannochloropsis ... [more]
XP_009521153.14.200e-727.69hypothetical protein PHYSODRAFT_540459 [Phytophtho... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00720.1NO24G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00720.1NO24G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00720 ID=NO24G00720|Name=NO24G00720|organism=Nannochloropsis oceanica|type=gene|length=675bp
ATGGGGTTTAAAAACAAATTGCAGCAGTTGTTTCCCCCCATCTATGATAC
CAAGGTATTGGCAAAAGGATTAGGGGTGGCTGACAGCCAGGGAGACACGA
ACTTGGAAGGGCTCTATAAAAGCGAGGGAGGGGCGGAGGTAGAGTTGGAG
GGTGGGGAGGGAAATGGAGGAGCAGCGCATGAGGCCGGTCACGATGCCTT
TATGACGGGTGTAGTTTTTGCAAGTCTGTTGCGACGGGCCAGGAGTAGGG
TGGGGGAGGAAGCAGTATCGGGTGCGAGTGTCAGGAGCAGTAATAGTATG
CCTAGTCTGGCGTATGCCGAGGAATGGGCGCACAAGGTGTTTATGCGCAT
GACGGACGTTGACACTTTTGAACTACGAAATTTCAAGCAGGTCCCAGATC
GCTCGCGGGTATTTCACGTACGTACCCAAGGCACTGCTTCCTTACCTTTG
CTACAGCATCGGGAGTTAAGAGAGGCGTTTGCTTCGCTCGGTCCTTTGCA
GATTAAGGCGCTGGGGAAACATGAGGCATACGTGGTGTTTCAGGACTTGA
CACGGCCGCCGCCCGAAGTAGAGATGATGAAAAAGTTGGTGGTGAATTTG
GGTAGCCAGGCGGGCGGAGGGTTGGATATCATGACGTATGAGGAAAGAAG
GGTGGCCTTGGGTATTCTGTGGTAG
back to top

protein sequence of NO24G00720.1

>NO24G00720.1-protein ID=NO24G00720.1-protein|Name=NO24G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MGFKNKLQQLFPPIYDTKVLAKGLGVADSQGDTNLEGLYKSEGGAEVELE
GGEGNGGAAHEAGHDAFMTGVVFASLLRRARSRVGEEAVSGASVRSSNSM
PSLAYAEEWAHKVFMRMTDVDTFELRNFKQVPDRSRVFHVRTQGTASLPL
LQHRELREAFASLGPLQIKALGKHEAYVVFQDLTRPPPEVEMMKKLVVNL
GSQAGGGLDIMTYEERRVALGILW*
back to top
Synonyms
Publications