NO24G00720.1, NO24G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00720.1
Unique NameNO24G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr24:216474..217148 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:216474..217148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00720.1 vs.
Match: EWM21105.1 (poly -specific ribonuclease parn [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 7.800e-78
Identity = 151/228 (66.23%), Postives = 182/228 (79.82%), Query Frame = 0 
Query:    1 MGFKNKLQQLFPPIYDTKVLAKGLGVADSQGDTNLEGLYKSEGGAEVELEGGEGNGGAAHEAGHDAFMTGVVFASLLRRARSRVGEE----AVSGASVRSSNSMPSLAYAEEWAHKVFMRMTDVDTFELRNFKQVPDRSRVFHVRTQGTASLPLLQHRELREAFASLGPLQIKALGKHEAYVVFQDLTRPPPEVEMMKKLVVNLGSQAGGGLDIMTYEERRVALGILW 225
            MGFK K+Q  FP IYDTKVLAK LGV D  GDTNL GLY+ EGG  V LEG  G   AAHEAGHDAFMTGV+F+SLLRR ++++ E       S + + S  SMPSLAYAE W++KVFMR+TDV++FELRNFKQ+PDR+RVFHVRT+ + +LP LQH +LR AF+SLG +QIKALGKHEAYVVF D+TRPPPEV  +K+LV + G++A  GL+I+TYEERRVALGILW
Sbjct:  382 MGFKAKVQHFFPSIYDTKVLAKSLGVTDEHGDTNLAGLYRKEGGGRVALEGVTG---AAHEAGHDAFMTGVIFSSLLRRIKAKLSENISDCGTSPSPLSSPCSMPSLAYAENWSNKVFMRLTDVESFELRNFKQIPDRTRVFHVRTRCSGALPHLQHHQLRRAFSSLGSVQIKALGKHEAYVVFHDITRPPPEVSELKELVSSSGAEADEGLEIVTYEERRVALGILW 606
The following BLAST results are available for this feature:
BLAST of NO24G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21105.17.800e-7866.23poly -specific ribonuclease parn [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00720NO24G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00720.1NO24G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00720.1.cds1NO24G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00720.1 ID=NO24G00720.1|Name=NO24G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGGGGTTTAAAAACAAATTGCAGCAGTTGTTTCCCCCCATCTATGATAC
CAAGGTATTGGCAAAAGGATTAGGGGTGGCTGACAGCCAGGGAGACACGA
ACTTGGAAGGGCTCTATAAAAGCGAGGGAGGGGCGGAGGTAGAGTTGGAG
GGTGGGGAGGGAAATGGAGGAGCAGCGCATGAGGCCGGTCACGATGCCTT
TATGACGGGTGTAGTTTTTGCAAGTCTGTTGCGACGGGCCAGGAGTAGGG
TGGGGGAGGAAGCAGTATCGGGTGCGAGTGTCAGGAGCAGTAATAGTATG
CCTAGTCTGGCGTATGCCGAGGAATGGGCGCACAAGGTGTTTATGCGCAT
GACGGACGTTGACACTTTTGAACTACGAAATTTCAAGCAGGTCCCAGATC
GCTCGCGGGTATTTCACGTACGTACCCAAGGCACTGCTTCCTTACCTTTG
CTACAGCATCGGGAGTTAAGAGAGGCGTTTGCTTCGCTCGGTCCTTTGCA
GATTAAGGCGCTGGGGAAACATGAGGCATACGTGGTGTTTCAGGACTTGA
CACGGCCGCCGCCCGAAGTAGAGATGATGAAAAAGTTGGTGGTGAATTTG
GGTAGCCAGGCGGGCGGAGGGTTGGATATCATGACGTATGAGGAAAGAAG
GGTGGCCTTGGGTATTCTGTGGTAG
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protein sequence of NO24G00720.1

>NO24G00720.1-protein ID=NO24G00720.1-protein|Name=NO24G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MGFKNKLQQLFPPIYDTKVLAKGLGVADSQGDTNLEGLYKSEGGAEVELE
GGEGNGGAAHEAGHDAFMTGVVFASLLRRARSRVGEEAVSGASVRSSNSM
PSLAYAEEWAHKVFMRMTDVDTFELRNFKQVPDRSRVFHVRTQGTASLPL
LQHRELREAFASLGPLQIKALGKHEAYVVFQDLTRPPPEVEMMKKLVVNL
GSQAGGGLDIMTYEERRVALGILW*
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mRNA from alignment at chr24:216474..217148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00720.1 ID=NO24G00720.1|Name=NO24G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at chr24:216474..217148+ (Nannochloropsis oceanica)
ATGGGGTTTAAAAACAAATTGCAGCAGTTGTTTCCCCCCATCTATGATAC
CAAGGTATTGGCAAAAGGATTAGGGGTGGCTGACAGCCAGGGAGACACGA
ACTTGGAAGGGCTCTATAAAAGCGAGGGAGGGGCGGAGGTAGAGTTGGAG
GGTGGGGAGGGAAATGGAGGAGCAGCGCATGAGGCCGGTCACGATGCCTT
TATGACGGGTGTAGTTTTTGCAAGTCTGTTGCGACGGGCCAGGAGTAGGG
TGGGGGAGGAAGCAGTATCGGGTGCGAGTGTCAGGAGCAGTAATAGTATG
CCTAGTCTGGCGTATGCCGAGGAATGGGCGCACAAGGTGTTTATGCGCAT
GACGGACGTTGACACTTTTGAACTACGAAATTTCAAGCAGGTCCCAGATC
GCTCGCGGGTATTTCACGTACGTACCCAAGGCACTGCTTCCTTACCTTTG
CTACAGCATCGGGAGTTAAGAGAGGCGTTTGCTTCGCTCGGTCCTTTGCA
GATTAAGGCGCTGGGGAAACATGAGGCATACGTGGTGTTTCAGGACTTGA
CACGGCCGCCGCCCGAAGTAGAGATGATGAAAAAGTTGGTGGTGAATTTG
GGTAGCCAGGCGGGCGGAGGGTTGGATATCATGACGTATGAGGAAAGAAG
GGTGGCCTTGGGTATTCTGTGGTAG
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Coding sequence (CDS) from alignment at chr24:216474..217148+

>NO24G00720.1 ID=NO24G00720.1|Name=NO24G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr24:216474..217148+ (Nannochloropsis oceanica)
ATGGGGTTTAAAAACAAATTGCAGCAGTTGTTTCCCCCCATCTATGATAC
CAAGGTATTGGCAAAAGGATTAGGGGTGGCTGACAGCCAGGGAGACACGA
ACTTGGAAGGGCTCTATAAAAGCGAGGGAGGGGCGGAGGTAGAGTTGGAG
GGTGGGGAGGGAAATGGAGGAGCAGCGCATGAGGCCGGTCACGATGCCTT
TATGACGGGTGTAGTTTTTGCAAGTCTGTTGCGACGGGCCAGGAGTAGGG
TGGGGGAGGAAGCAGTATCGGGTGCGAGTGTCAGGAGCAGTAATAGTATG
CCTAGTCTGGCGTATGCCGAGGAATGGGCGCACAAGGTGTTTATGCGCAT
GACGGACGTTGACACTTTTGAACTACGAAATTTCAAGCAGGTCCCAGATC
GCTCGCGGGTATTTCACGTACGTACCCAAGGCACTGCTTCCTTACCTTTG
CTACAGCATCGGGAGTTAAGAGAGGCGTTTGCTTCGCTCGGTCCTTTGCA
GATTAAGGCGCTGGGGAAACATGAGGCATACGTGGTGTTTCAGGACTTGA
CACGGCCGCCGCCCGAAGTAGAGATGATGAAAAAGTTGGTGGTGAATTTG
GGTAGCCAGGCGGGCGGAGGGTTGGATATCATGACGTATGAGGAAAGAAG
GGTGGCCTTGGGTATTCTGTGGTAG
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Synonyms
Publications