NO24G00710, NO24G00710 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G00710 vs. NCBI_GenBank
Match: EWM21105.1 (poly -specific ribonuclease parn [Nannochloropsis gaditana]) HSP 1 Score: 373.6 bits (958), Expect = 5.400e-100 Identity = 177/226 (78.32%), Postives = 200/226 (88.50%), Query Frame = 0 Query: 49 LPPSQAVVQAQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQSDRIFSCDAASLSFLRSHNLDFNQWLDGVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPFLLPQGMQWFRKKMVENTIWRHPEK 275 + P +AVVQ+QYE+VSR +FP VLE+IR IGKEAAFFSLDTEFTGY+Q+ RDEYFDTVQ+RY+KKK VAE YL+VQMGLSAFVWD AL DYKA+TWNIH+YPS LQS+RIFSCDA+SLSFLRSHNLDFN W+DGVPFLA+DQEASLRKQVEDQAEWDLKA+ GKKP RS DPNADAETVELH++L EALD L PG+ PFLLPQ + WFRKKMV+NTI RHP K Sbjct: 52 ISPRRAVVQSQYEEVSRLSFPDVLEKIRSIGKEAAFFSLDTEFTGYRQEERDEYFDTVQERYLKKKRVAERYLLVQMGLSAFVWDKALEDYKAFTWNIHLYPSKLQSERIFSCDASSLSFLRSHNLDFNLWVDGVPFLAIDQEASLRKQVEDQAEWDLKANAYAGKKPARSNFDPNADAETVELHRQLKEALDKLGPGAEPFLLPQNLSWFRKKMVQNTIGRHPRK 277
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_006681993.1 (hypothetical protein BATDEDRAFT_36029 [Batrachochytrium dendrobatidis JAM81] >EGF77459.1 hypothetical protein BATDEDRAFT_36029 [Batrachochytrium dendrobatidis JAM81] >OAJ37789.1 hypothetical protein BDEG_21781 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 104.8 bits (260), Expect = 4.700e-19 Identity = 55/145 (37.93%), Postives = 88/145 (60.69%), Query Frame = 0 Query: 62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFT--GYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPST----LQSDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVE 200 +V ++ F VL+ +R + A F ++DTEFT G + R DT Q+RY+K + A + +Q+GL+AF WDA G Y + +N +IYP T DR F +SL FL + DFN+W+ +G+PF+++ +EA++RK++E Sbjct: 2 EVVQSNFEEVLDSVREAIENADFIAVDTEFTGLGLTPNERLSLLDTPQERYLKHRSAARLFEPIQIGLAAFKWDAEQGVYMSKPFNFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFDFNKWIREGIPFVSITEEAAIRKKLE 146
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_016611818.1 (hypothetical protein SPPG_01236 [Spizellomyces punctatus DAOM BR117] >KND03779.1 hypothetical protein SPPG_01236 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 101.3 bits (251), Expect = 5.100e-18 Identity = 56/148 (37.84%), Postives = 87/148 (58.78%), Query Frame = 0 Query: 58 AQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGY--KQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPS----TLQSDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQV 199 A+ +V R +F +L I+ +EA F ++DTE +G + + + DTVQ+RY K + A+N+LV+Q GL F WD+ Y A +N +++P TL DR +S SL FLR + DFN+W+ G+PFL +D EA R+++ Sbjct: 101 AKSMEVLRNSFEALLPNIQEAVQEADFIAIDTELSGIGTARPYQIAFLDTVQERYEKIRRSAQNFLVIQFGLCTFTWDSGRKVYVAKPFNCYVFPQSGSRTLGLDRQYSFQIGSLEFLRGNKFDFNKWISQGIPFLNLDDEAEARQKI 248
BLAST of NO24G00710 vs. NCBI_GenBank
Match: GAQ84865.1 (Poly(A)-specific exoribonuclease PARN [Klebsormidium nitens]) HSP 1 Score: 100.5 bits (249), Expect = 8.800e-18 Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = 0 Query: 62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQD--NRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQS-DRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVEDQAEWDLKA----SFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAP 250 +V+ F V+ I F ++D EFTG + R+EYFD ++QRY + + A+++LV+Q+GLS F W Y+A T+N ++YP S D F+C A+SL FL HN DFN+++ +GVPF+ + + ++E QA +A S G R E + H+ + + + + G +P Sbjct: 2 EVTAGNFELVIPSIERAISRCDFVAIDCEFTGLDVNGRRREEYFDDLEQRYARVRMSAQHFLVIQVGLSLFEWCPCEQTYRASTYNCYVYPRPHGSFDLRFTCQASSLEFLSKHNFDFNKFIYEGVPFINLSTAEEMYAKLEQQASAAAQAANIPSTGASAPVNRDIRQALRSEEDKQRHRDIIDRVREWLEGDSP 197
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_004348604.1 (ribonuclease, putative [Acanthamoeba castellanii str. Neff] >ELR22146.1 ribonuclease, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 99.0 bits (245), Expect = 2.600e-17 Identity = 71/220 (32.27%), Postives = 108/220 (49.09%), Query Frame = 0 Query: 62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYK----QDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTL-QSDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDD--LKPGSAPFLLPQGMQWFRKKMVENTIWRHPE 274 +V+++ F VL ++ + F S D EFTG DN D +++RY K K + + + Q GLSAF WDA Y A TWN +++P DR F+C AASL FL H DFN+++ +GV +L+ E +R QVE++ + L A+ P P +P VE + ++D GS P LL + R+ + + +PE Sbjct: 2 EVTKSNFAAVLPDVKEAIAASDFLSFDLEFTGLTLGGYLDNHP--VDLLEERYKKLKENSSAFTITQFGLSAFTWDATENKYVARTWNFYLFPRPYGWCDRRFTCQAASLQFLLEHKFDFNKFIYEGVGYLSRYVEGKMRPQVEEEIQKLLDAA-SQEALPDIVPTNP----RDVEFVAGIKASIDGWLQGDGSEPLLLIAPNSFLRRLVYQEVRGNYPE 214
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_002129059.1 (PREDICTED: poly(A)-specific ribonuclease PARN [Ciona intestinalis]) HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16 Identity = 65/227 (28.63%), Postives = 113/227 (49.78%), Query Frame = 0 Query: 63 VSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRD-EYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQ----SDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVED-----QAEWDLKASFGG-GKKP-TRSPLDPNADAETVELHKRLSEALDDLKPGS--APFLLPQGMQWFRKKMVENTIWRHPEK 275 ++RA F L + E++F +D EFTG + +D+ ++RY+K EN++++Q G+ F W Y+ +N +I+P DRIFSC A+SL FL + DFN+ + +G+PFL +EAS+R +E+ Q+ + A F G G+ P ++ P P D +T + +++ + + + + +L + RK + EN P K Sbjct: 3 ITRANFTETLPIVSKAIDESSFICIDGEFTGLTNHRYNLTSYDSPEERYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQASSLDFLTLQDFDFNKAIKEGIPFLRPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSPSSKGPSTPITDQKTKDFTEKVVAKIKNFLENTEDSEIVLEPCNSYLRKILFENIPAAFPGK 229
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_019848810.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [Amphimedon queenslandica]) HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16 Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 0 Query: 63 VSRATFPGVLERIRCIGKEAAFFSLDTEFTGY---KQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQS--DRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVEDQAE 204 V R+ F L I + KE+AF ++DTEFTG + DNR FDT++ RY K + A ++ + Q G+S F+ D + Y A+++N +++P T Q + F A++ FL H+ DFN+W +G+ F +EA L +V + E Sbjct: 3 VVRSNFSSALLSIEALVKESAFIAIDTEFTGLSTNESDNR-SLFDTIESRYAKLRRTAHSFTICQFGMSVFISDPEMKHYTAHSFNFYLFPKTFQHIYNPRFLIQCANIEFLCEHSFDFNKWFYEGISFCNRQEEAKLTTEVVSKEE 148
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_011696841.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like [Wasmannia auropunctata]) HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16 Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 0 Query: 62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQ---SDRIFSCDAASLSFLRSHNLDFNQ-WLDGVPFLAVDQEASLRKQVEDQ 202 +V+ + F VL + + ++A F S+D EFTG FDT Q Y K +G + ++L+VQ GLS F +D Y ++N +++P L D F C A+S++FL + N DFN+ + G+P+L+ +E L K++E++ Sbjct: 2 EVTSSNFQDVLSELESVIRDATFLSIDGEFTGLNSGPDAGPFDTPAQYYAKLRGGSMDFLLVQFGLSVFTYDVQTNKYSQRSYNFYVFPKPLNRQAPDSRFLCQASSMAFLANQNFDFNKLFKHGIPYLSASEEEKLVKRMEER 145
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_003726420.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [Strongylocentrotus purpuratus]) HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16 Identity = 51/142 (35.92%), Postives = 87/142 (61.27%), Query Frame = 0 Query: 62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGY--KQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQS-DRIFSCDAASLSFLRSHNLDFNQ-WLDGVPFLAVDQEASLRKQVE 200 +++R++ + I ++++F ++DTEFTG Q + + FDT QRY K + +A Y + Q+G+SAFV Y+A+T+N H++P ++ S D F+C A+S+ FL HN +FN+ + +GV +L D+E LR Q + Sbjct: 2 EINRSSHSSESKNILQSIQDSSFIAIDTEFTGLHATQSDINSLFDTPAQRYEKLRRMAMQYTICQLGVSAFVKVPNTNTYEAHTYNFHLFPRSISSLDARFTCQASSIEFLCKHNFNFNKLFYEGVSYLTRDEEEELRSQAQ 143
BLAST of NO24G00710 vs. NCBI_GenBank
Match: KMQ84136.1 (poly -specific ribonuclease parn [Lasius niger]) HSP 1 Score: 95.9 bits (237), Expect = 2.200e-16 Identity = 59/216 (27.31%), Postives = 108/216 (50.00%), Query Frame = 0 Query: 62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTL--QSDRIFSCDAASLSFLRSHNLDFNQWLD-GVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPFLLPQGMQWFRKKMVENTIWRHPEK 275 +V+ F VL + I + A F S+D EFTG FDT Q Y K + + ++L+VQ GLS F +D+ Y ++N +++P + Q+D F C A+S++FL + + DFN+ + G+P+L+ ++E L K++E++ + K+ L P +D + ++ + S D L + + + + R+ + + R P K Sbjct: 2 EVTCLNFQDVLSELDSIIENATFLSIDGEFTGLNSGPDAGPFDTPAQYYAKLRAGSMDFLLVQFGLSVFTYDSQTDKYSQRSYNFYVFPKPVNRQADCRFMCQASSIAFLANQDFDFNKLFNYGIPYLSANEEEKLAKRLEEKQKI---------KEENNQDLIPISDTDKPQIEEICSRIEDFLTSDAEEITIDKCNAFMRRLVYQEAKIRWPNK 208 The following BLAST results are available for this feature:
BLAST of NO24G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00710 ID=NO24G00710|Name=NO24G00710|organism=Nannochloropsis oceanica|type=gene|length=858bpback to top protein sequence of NO24G00710.1 >NO24G00710.1-protein ID=NO24G00710.1-protein|Name=NO24G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bpback to top Synonyms
Publications
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