NO24G00710, NO24G00710 (gene) Nannochloropsis oceanica

Overview
NameNO24G00710
Unique NameNO24G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr24:215333..216190 +

Link to JBrowse

Properties
Property NameValue
DescriptionPoly-specific ribonuclease parn
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:215333..216190 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR006941RNase_CAF1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
BLAST of NO24G00710 vs. NCBI_GenBank
Match: EWM21105.1 (poly -specific ribonuclease parn [Nannochloropsis gaditana])

HSP 1 Score: 373.6 bits (958), Expect = 5.400e-100
Identity = 177/226 (78.32%), Postives = 200/226 (88.50%), Query Frame = 0
Query:   49 LPPSQAVVQAQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQSDRIFSCDAASLSFLRSHNLDFNQWLDGVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPFLLPQGMQWFRKKMVENTIWRHPEK 275
            + P +AVVQ+QYE+VSR +FP VLE+IR IGKEAAFFSLDTEFTGY+Q+ RDEYFDTVQ+RY+KKK VAE YL+VQMGLSAFVWD AL DYKA+TWNIH+YPS LQS+RIFSCDA+SLSFLRSHNLDFN W+DGVPFLA+DQEASLRKQVEDQAEWDLKA+   GKKP RS  DPNADAETVELH++L EALD L PG+ PFLLPQ + WFRKKMV+NTI RHP K
Sbjct:   52 ISPRRAVVQSQYEEVSRLSFPDVLEKIRSIGKEAAFFSLDTEFTGYRQEERDEYFDTVQERYLKKKRVAERYLLVQMGLSAFVWDKALEDYKAFTWNIHLYPSKLQSERIFSCDASSLSFLRSHNLDFNLWVDGVPFLAIDQEASLRKQVEDQAEWDLKANAYAGKKPARSNFDPNADAETVELHRQLKEALDKLGPGAEPFLLPQNLSWFRKKMVQNTIGRHPRK 277          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_006681993.1 (hypothetical protein BATDEDRAFT_36029 [Batrachochytrium dendrobatidis JAM81] >EGF77459.1 hypothetical protein BATDEDRAFT_36029 [Batrachochytrium dendrobatidis JAM81] >OAJ37789.1 hypothetical protein BDEG_21781 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 104.8 bits (260), Expect = 4.700e-19
Identity = 55/145 (37.93%), Postives = 88/145 (60.69%), Query Frame = 0
Query:   62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFT--GYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPST----LQSDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVE 200
            +V ++ F  VL+ +R   + A F ++DTEFT  G   + R    DT Q+RY+K +  A  +  +Q+GL+AF WDA  G Y +  +N +IYP T       DR F    +SL FL  +  DFN+W+ +G+PF+++ +EA++RK++E
Sbjct:    2 EVVQSNFEEVLDSVREAIENADFIAVDTEFTGLGLTPNERLSLLDTPQERYLKHRSAARLFEPIQIGLAAFKWDAEQGVYMSKPFNFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFDFNKWIREGIPFVSITEEAAIRKKLE 146          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_016611818.1 (hypothetical protein SPPG_01236 [Spizellomyces punctatus DAOM BR117] >KND03779.1 hypothetical protein SPPG_01236 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 101.3 bits (251), Expect = 5.100e-18
Identity = 56/148 (37.84%), Postives = 87/148 (58.78%), Query Frame = 0
Query:   58 AQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGY--KQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPS----TLQSDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQV 199
            A+  +V R +F  +L  I+   +EA F ++DTE +G    +  +  + DTVQ+RY K +  A+N+LV+Q GL  F WD+    Y A  +N +++P     TL  DR +S    SL FLR +  DFN+W+  G+PFL +D EA  R+++
Sbjct:  101 AKSMEVLRNSFEALLPNIQEAVQEADFIAIDTELSGIGTARPYQIAFLDTVQERYEKIRRSAQNFLVIQFGLCTFTWDSGRKVYVAKPFNCYVFPQSGSRTLGLDRQYSFQIGSLEFLRGNKFDFNKWISQGIPFLNLDDEAEARQKI 248          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: GAQ84865.1 (Poly(A)-specific exoribonuclease PARN [Klebsormidium nitens])

HSP 1 Score: 100.5 bits (249), Expect = 8.800e-18
Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = 0
Query:   62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQD--NRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQS-DRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVEDQAEWDLKA----SFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAP 250
            +V+   F  V+  I        F ++D EFTG   +   R+EYFD ++QRY + +  A+++LV+Q+GLS F W      Y+A T+N ++YP    S D  F+C A+SL FL  HN DFN+++ +GVPF+ +     +  ++E QA    +A    S G      R         E  + H+ + + + +   G +P
Sbjct:    2 EVTAGNFELVIPSIERAISRCDFVAIDCEFTGLDVNGRRREEYFDDLEQRYARVRMSAQHFLVIQVGLSLFEWCPCEQTYRASTYNCYVYPRPHGSFDLRFTCQASSLEFLSKHNFDFNKFIYEGVPFINLSTAEEMYAKLEQQASAAAQAANIPSTGASAPVNRDIRQALRSEEDKQRHRDIIDRVREWLEGDSP 197          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_004348604.1 (ribonuclease, putative [Acanthamoeba castellanii str. Neff] >ELR22146.1 ribonuclease, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 99.0 bits (245), Expect = 2.600e-17
Identity = 71/220 (32.27%), Postives = 108/220 (49.09%), Query Frame = 0
Query:   62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYK----QDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTL-QSDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDD--LKPGSAPFLLPQGMQWFRKKMVENTIWRHPE 274
            +V+++ F  VL  ++     + F S D EFTG       DN     D +++RY K K  +  + + Q GLSAF WDA    Y A TWN +++P      DR F+C AASL FL  H  DFN+++ +GV +L+   E  +R QVE++ +  L A+      P   P +P      VE    +  ++D      GS P LL     + R+ + +     +PE
Sbjct:    2 EVTKSNFAAVLPDVKEAIAASDFLSFDLEFTGLTLGGYLDNHP--VDLLEERYKKLKENSSAFTITQFGLSAFTWDATENKYVARTWNFYLFPRPYGWCDRRFTCQAASLQFLLEHKFDFNKFIYEGVGYLSRYVEGKMRPQVEEEIQKLLDAA-SQEALPDIVPTNP----RDVEFVAGIKASIDGWLQGDGSEPLLLIAPNSFLRRLVYQEVRGNYPE 214          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_002129059.1 (PREDICTED: poly(A)-specific ribonuclease PARN [Ciona intestinalis])

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16
Identity = 65/227 (28.63%), Postives = 113/227 (49.78%), Query Frame = 0
Query:   63 VSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRD-EYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQ----SDRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVED-----QAEWDLKASFGG-GKKP-TRSPLDPNADAETVELHKRLSEALDDLKPGS--APFLLPQGMQWFRKKMVENTIWRHPEK 275
            ++RA F   L  +     E++F  +D EFTG      +   +D+ ++RY+K     EN++++Q G+  F W      Y+   +N +I+P         DRIFSC A+SL FL   + DFN+ + +G+PFL   +EAS+R  +E+     Q+ +   A F G G+ P ++ P  P  D +T +  +++   + +    +  +  +L     + RK + EN     P K
Sbjct:    3 ITRANFTETLPIVSKAIDESSFICIDGEFTGLTNHRYNLTSYDSPEERYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQASSLDFLTLQDFDFNKAIKEGIPFLRPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSPSSKGPSTPITDQKTKDFTEKVVAKIKNFLENTEDSEIVLEPCNSYLRKILFENIPAAFPGK 229          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_019848810.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [Amphimedon queenslandica])

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 0
Query:   63 VSRATFPGVLERIRCIGKEAAFFSLDTEFTGY---KQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQS--DRIFSCDAASLSFLRSHNLDFNQWL-DGVPFLAVDQEASLRKQVEDQAE 204
            V R+ F   L  I  + KE+AF ++DTEFTG    + DNR   FDT++ RY K +  A ++ + Q G+S F+ D  +  Y A+++N +++P T Q   +  F    A++ FL  H+ DFN+W  +G+ F    +EA L  +V  + E
Sbjct:    3 VVRSNFSSALLSIEALVKESAFIAIDTEFTGLSTNESDNR-SLFDTIESRYAKLRRTAHSFTICQFGMSVFISDPEMKHYTAHSFNFYLFPKTFQHIYNPRFLIQCANIEFLCEHSFDFNKWFYEGISFCNRQEEAKLTTEVVSKEE 148          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_011696841.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like [Wasmannia auropunctata])

HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16
Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 0
Query:   62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQ---SDRIFSCDAASLSFLRSHNLDFNQ-WLDGVPFLAVDQEASLRKQVEDQ 202
            +V+ + F  VL  +  + ++A F S+D EFTG         FDT  Q Y K +G + ++L+VQ GLS F +D     Y   ++N +++P  L     D  F C A+S++FL + N DFN+ +  G+P+L+  +E  L K++E++
Sbjct:    2 EVTSSNFQDVLSELESVIRDATFLSIDGEFTGLNSGPDAGPFDTPAQYYAKLRGGSMDFLLVQFGLSVFTYDVQTNKYSQRSYNFYVFPKPLNRQAPDSRFLCQASSMAFLANQNFDFNKLFKHGIPYLSASEEEKLVKRMEER 145          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: XP_003726420.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [Strongylocentrotus purpuratus])

HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16
Identity = 51/142 (35.92%), Postives = 87/142 (61.27%), Query Frame = 0
Query:   62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGY--KQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQS-DRIFSCDAASLSFLRSHNLDFNQ-WLDGVPFLAVDQEASLRKQVE 200
            +++R++     + I    ++++F ++DTEFTG    Q + +  FDT  QRY K + +A  Y + Q+G+SAFV       Y+A+T+N H++P ++ S D  F+C A+S+ FL  HN +FN+ + +GV +L  D+E  LR Q +
Sbjct:    2 EINRSSHSSESKNILQSIQDSSFIAIDTEFTGLHATQSDINSLFDTPAQRYEKLRRMAMQYTICQLGVSAFVKVPNTNTYEAHTYNFHLFPRSISSLDARFTCQASSIEFLCKHNFNFNKLFYEGVSYLTRDEEEELRSQAQ 143          
BLAST of NO24G00710 vs. NCBI_GenBank
Match: KMQ84136.1 (poly -specific ribonuclease parn [Lasius niger])

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-16
Identity = 59/216 (27.31%), Postives = 108/216 (50.00%), Query Frame = 0
Query:   62 QVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTL--QSDRIFSCDAASLSFLRSHNLDFNQWLD-GVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPFLLPQGMQWFRKKMVENTIWRHPEK 275
            +V+   F  VL  +  I + A F S+D EFTG         FDT  Q Y K +  + ++L+VQ GLS F +D+    Y   ++N +++P  +  Q+D  F C A+S++FL + + DFN+  + G+P+L+ ++E  L K++E++ +          K+     L P +D +  ++ +  S   D L   +    + +   + R+ + +    R P K
Sbjct:    2 EVTCLNFQDVLSELDSIIENATFLSIDGEFTGLNSGPDAGPFDTPAQYYAKLRAGSMDFLLVQFGLSVFTYDSQTDKYSQRSYNFYVFPKPVNRQADCRFMCQASSIAFLANQDFDFNKLFNYGIPYLSANEEEKLAKRLEEKQKI---------KEENNQDLIPISDTDKPQIEEICSRIEDFLTSDAEEITIDKCNAFMRRLVYQEAKIRWPNK 208          
The following BLAST results are available for this feature:
BLAST of NO24G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21105.15.400e-10078.32poly -specific ribonuclease parn [Nannochloropsis ... [more]
XP_006681993.14.700e-1937.93hypothetical protein BATDEDRAFT_36029 [Batrachochy... [more]
XP_016611818.15.100e-1837.84hypothetical protein SPPG_01236 [Spizellomyces pun... [more]
GAQ84865.18.800e-1831.63Poly(A)-specific exoribonuclease PARN [Klebsormidi... [more]
XP_004348604.12.600e-1732.27ribonuclease, putative [Acanthamoeba castellanii s... [more]
XP_002129059.11.300e-1628.63PREDICTED: poly(A)-specific ribonuclease PARN [Cio... [more]
XP_019848810.11.300e-1635.37PREDICTED: poly(A)-specific ribonuclease PARN-like... [more]
XP_011696841.11.700e-1634.03PREDICTED: poly(A)-specific ribonuclease PARN-like... [more]
XP_003726420.11.700e-1635.92PREDICTED: poly(A)-specific ribonuclease PARN-like... [more]
KMQ84136.12.200e-1627.31poly -specific ribonuclease parn [Lasius niger][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004836NSK004836Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00710.1NO24G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598169gene_7304Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g35gene9313Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00710.1NO24G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00710 ID=NO24G00710|Name=NO24G00710|organism=Nannochloropsis oceanica|type=gene|length=858bp
ATGGCAACCTCCCGGCTCCTGCGGCTGGTCATCGTGCTGCTGCTACTGGA
GCTACTGTCGTGCAGAGCCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTA
TCCTGCCGCCTGCCGTGTCGCATACAGTGAGAAGGCATAAGCACCTCCCG
CCATCCCAAGCTGTCGTCCAAGCGCAGTACGAGCAGGTCTCCCGTGCCAC
CTTTCCCGGGGTCCTGGAGCGCATCCGGTGCATTGGCAAGGAGGCAGCCT
TCTTTTCACTTGACACCGAGTTCACCGGCTACAAACAAGACAACAGGGAT
GAATACTTCGATACGGTGCAGCAGCGTTACATTAAAAAAAAGGGCGTGGC
CGAGAACTACCTCGTCGTGCAAATGGGATTATCCGCCTTTGTCTGGGACG
CGGCGCTGGGTGACTACAAGGCTTATACGTGGAACATTCACATATATCCT
TCCACGCTGCAGAGCGACCGTATTTTTTCGTGTGACGCTGCATCCCTTAG
TTTTCTGCGTTCTCACAACCTGGACTTCAACCAGTGGCTTGACGGCGTCC
CTTTCCTGGCAGTCGACCAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGAC
CAAGCCGAGTGGGACCTGAAAGCGAGCTTTGGTGGAGGAAAGAAACCAAC
ACGTAGCCCTTTGGACCCCAACGCAGATGCGGAGACGGTGGAGCTACACA
AGCGACTAAGCGAGGCCCTCGACGACTTGAAGCCGGGAAGTGCCCCGTTC
CTCCTCCCCCAAGGCATGCAATGGTTCCGGAAAAAGATGGTCGAAAACAC
CATATGGCGACACCCCGAAAAGCCAACCTGTGGCTGGAAGCCGTTGTACC
ACCAGTAG
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protein sequence of NO24G00710.1

>NO24G00710.1-protein ID=NO24G00710.1-protein|Name=NO24G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MATSRLLRLVIVLLLLELLSCRAVFLSSRPSAFILPPAVSHTVRRHKHLP
PSQAVVQAQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRD
EYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYP
STLQSDRIFSCDAASLSFLRSHNLDFNQWLDGVPFLAVDQEASLRKQVED
QAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPF
LLPQGMQWFRKKMVENTIWRHPEKPTCGWKPLYHQ*
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Synonyms
Publications