NO24G00710.1, NO24G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00710.1
Unique NameNO24G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr24:215333..216190 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:215333..216190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00710.1 vs.
Match: EWM21105.1 (poly -specific ribonuclease parn [Nannochloropsis gaditana])

HSP 1 Score: 373.6 bits (958), Expect = 5.400e-100
Identity = 177/226 (78.32%), Postives = 200/226 (88.50%), Query Frame = 0 
Query:   49 LPPSQAVVQAQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRDEYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYPSTLQSDRIFSCDAASLSFLRSHNLDFNQWLDGVPFLAVDQEASLRKQVEDQAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPFLLPQGMQWFRKKMVENTIWRHPEK 275
            + P +AVVQ+QYE+VSR +FP VLE+IR IGKEAAFFSLDTEFTGY+Q+ RDEYFDTVQ+RY+KKK VAE YL+VQMGLSAFVWD AL DYKA+TWNIH+YPS LQS+RIFSCDA+SLSFLRSHNLDFN W+DGVPFLA+DQEASLRKQVEDQAEWDLKA+   GKKP RS  DPNADAETVELH++L EALD L PG+ PFLLPQ + WFRKKMV+NTI RHP K
Sbjct:   52 ISPRRAVVQSQYEEVSRLSFPDVLEKIRSIGKEAAFFSLDTEFTGYRQEERDEYFDTVQERYLKKKRVAERYLLVQMGLSAFVWDKALEDYKAFTWNIHLYPSKLQSERIFSCDASSLSFLRSHNLDFNLWVDGVPFLAIDQEASLRKQVEDQAEWDLKANAYAGKKPARSNFDPNADAETVELHRQLKEALDKLGPGAEPFLLPQNLSWFRKKMVQNTIGRHPRK 277
The following BLAST results are available for this feature:
BLAST of NO24G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21105.15.400e-10078.32poly -specific ribonuclease parn [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00710NO24G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00710.1NO24G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00710.1.cds1NO24G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00710.1 ID=NO24G00710.1|Name=NO24G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGGCAACCTCCCGGCTCCTGCGGCTGGTCATCGTGCTGCTGCTACTGGA
GCTACTGTCGTGCAGAGCCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTA
TCCTGCCGCCTGCCGTGTCGCATACAGTGAGAAGGCATAAGCACCTCCCG
CCATCCCAAGCTGTCGTCCAAGCGCAGTACGAGCAGGTCTCCCGTGCCAC
CTTTCCCGGGGTCCTGGAGCGCATCCGGTGCATTGGCAAGGAGGCAGCCT
TCTTTTCACTTGACACCGAGTTCACCGGCTACAAACAAGACAACAGGGAT
GAATACTTCGATACGGTGCAGCAGCGTTACATTAAAAAAAAGGGCGTGGC
CGAGAACTACCTCGTCGTGCAAATGGGATTATCCGCCTTTGTCTGGGACG
CGGCGCTGGGTGACTACAAGGCTTATACGTGGAACATTCACATATATCCT
TCCACGCTGCAGAGCGACCGTATTTTTTCGTGTGACGCTGCATCCCTTAG
TTTTCTGCGTTCTCACAACCTGGACTTCAACCAGTGGCTTGACGGCGTCC
CTTTCCTGGCAGTCGACCAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGAC
CAAGCCGAGTGGGACCTGAAAGCGAGCTTTGGTGGAGGAAAGAAACCAAC
ACGTAGCCCTTTGGACCCCAACGCAGATGCGGAGACGGTGGAGCTACACA
AGCGACTAAGCGAGGCCCTCGACGACTTGAAGCCGGGAAGTGCCCCGTTC
CTCCTCCCCCAAGGCATGCAATGGTTCCGGAAAAAGATGGTCGAAAACAC
CATATGGCGACACCCCGAAAAGCCAACCTGTGGCTGGAAGCCGTTGTACC
ACCAGTAG
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protein sequence of NO24G00710.1

>NO24G00710.1-protein ID=NO24G00710.1-protein|Name=NO24G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MATSRLLRLVIVLLLLELLSCRAVFLSSRPSAFILPPAVSHTVRRHKHLP
PSQAVVQAQYEQVSRATFPGVLERIRCIGKEAAFFSLDTEFTGYKQDNRD
EYFDTVQQRYIKKKGVAENYLVVQMGLSAFVWDAALGDYKAYTWNIHIYP
STLQSDRIFSCDAASLSFLRSHNLDFNQWLDGVPFLAVDQEASLRKQVED
QAEWDLKASFGGGKKPTRSPLDPNADAETVELHKRLSEALDDLKPGSAPF
LLPQGMQWFRKKMVENTIWRHPEKPTCGWKPLYHQ*
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mRNA from alignment at chr24:215333..216190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00710.1 ID=NO24G00710.1|Name=NO24G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at chr24:215333..216190+ (Nannochloropsis oceanica)
ATGGCAACCTCCCGGCTCCTGCGGCTGGTCATCGTGCTGCTGCTACTGGA
GCTACTGTCGTGCAGAGCCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTA
TCCTGCCGCCTGCCGTGTCGCATACAGTGAGAAGGCATAAGCACCTCCCG
CCATCCCAAGCTGTCGTCCAAGCGCAGTACGAGCAGGTCTCCCGTGCCAC
CTTTCCCGGGGTCCTGGAGCGCATCCGGTGCATTGGCAAGGAGGCAGCCT
TCTTTTCACTTGACACCGAGTTCACCGGCTACAAACAAGACAACAGGGAT
GAATACTTCGATACGGTGCAGCAGCGTTACATTAAAAAAAAGGGCGTGGC
CGAGAACTACCTCGTCGTGCAAATGGGATTATCCGCCTTTGTCTGGGACG
CGGCGCTGGGTGACTACAAGGCTTATACGTGGAACATTCACATATATCCT
TCCACGCTGCAGAGCGACCGTATTTTTTCGTGTGACGCTGCATCCCTTAG
TTTTCTGCGTTCTCACAACCTGGACTTCAACCAGTGGCTTGACGGCGTCC
CTTTCCTGGCAGTCGACCAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGAC
CAAGCCGAGTGGGACCTGAAAGCGAGCTTTGGTGGAGGAAAGAAACCAAC
ACGTAGCCCTTTGGACCCCAACGCAGATGCGGAGACGGTGGAGCTACACA
AGCGACTAAGCGAGGCCCTCGACGACTTGAAGCCGGGAAGTGCCCCGTTC
CTCCTCCCCCAAGGCATGCAATGGTTCCGGAAAAAGATGGTCGAAAACAC
CATATGGCGACACCCCGAAAAGCCAACCTGTGGCTGGAAGCCGTTGTACC
ACCAGTAG
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Coding sequence (CDS) from alignment at chr24:215333..216190+

>NO24G00710.1 ID=NO24G00710.1|Name=NO24G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr24:215333..216190+ (Nannochloropsis oceanica)
ATGGCAACCTCCCGGCTCCTGCGGCTGGTCATCGTGCTGCTGCTACTGGA
GCTACTGTCGTGCAGAGCCGTCTTCTTGTCGTCGCGGCCGTCAGCTTTTA
TCCTGCCGCCTGCCGTGTCGCATACAGTGAGAAGGCATAAGCACCTCCCG
CCATCCCAAGCTGTCGTCCAAGCGCAGTACGAGCAGGTCTCCCGTGCCAC
CTTTCCCGGGGTCCTGGAGCGCATCCGGTGCATTGGCAAGGAGGCAGCCT
TCTTTTCACTTGACACCGAGTTCACCGGCTACAAACAAGACAACAGGGAT
GAATACTTCGATACGGTGCAGCAGCGTTACATTAAAAAAAAGGGCGTGGC
CGAGAACTACCTCGTCGTGCAAATGGGATTATCCGCCTTTGTCTGGGACG
CGGCGCTGGGTGACTACAAGGCTTATACGTGGAACATTCACATATATCCT
TCCACGCTGCAGAGCGACCGTATTTTTTCGTGTGACGCTGCATCCCTTAG
TTTTCTGCGTTCTCACAACCTGGACTTCAACCAGTGGCTTGACGGCGTCC
CTTTCCTGGCAGTCGACCAAGAAGCCAGCCTCCGAAAGCAAGTAGAGGAC
CAAGCCGAGTGGGACCTGAAAGCGAGCTTTGGTGGAGGAAAGAAACCAAC
ACGTAGCCCTTTGGACCCCAACGCAGATGCGGAGACGGTGGAGCTACACA
AGCGACTAAGCGAGGCCCTCGACGACTTGAAGCCGGGAAGTGCCCCGTTC
CTCCTCCCCCAAGGCATGCAATGGTTCCGGAAAAAGATGGTCGAAAACAC
CATATGGCGACACCCCGAAAAGCCAACCTGTGGCTGGAAGCCGTTGTACC
ACCAGTAG
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Synonyms
Publications