NO24G00490, NO24G00490 (gene) Nannochloropsis oceanica

Overview
NameNO24G00490
Unique NameNO24G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length942
Alignment locationchr24:160369..161310 +

Link to JBrowse

Properties
Property NameValue
DescriptionAsparaginyl-trna synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:160369..161310 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036282Glutathione-S-Trfase_C_sf
IPR004045Glutathione_S-Trfase_N
IPR010987Glutathione-S-Trfase_C-like
IPR004046GST_C
Homology
BLAST of NO24G00490 vs. NCBI_GenBank
Match: EWM24295.1 (asparaginyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 2.400e-77
Identity = 173/311 (55.63%), Postives = 205/311 (65.92%), Query Frame = 0
Query:    1 MSASTFRLRAPGESYQTRKVALAAALAGVELTTSLQEDPAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVDRFPGVWRWFLTLLHQPLFQKVAAPNAAATIKAFEARLPKVGSSKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKDGPASSLFRRGRTVIKEILVEVG 312
            M A++ RLRAPG SYQTRKV LAAALAGVEL+ SLQEDP  L+ LVPHGKSL+LEV+S S SP  +ARSN ALRFLAEN+PAAGLYGETLYEAGLVDQWLDFSFNSLE PA V+ LP  AQ  V  AVKETARRE+ GAV VLD+AL  +TFLAG K++LADV +FC+L+DL+   N G + ++ ++ FPGV RWFLTLLHQP FQ V +P  A  +K  +A+LP VGS++                                                      + KDGP SSLF R RTVIK++LVE G
Sbjct:    1 MQATSIRLRAPGVSYQTRKVVLAAALAGVELSVSLQEDPEILSSLVPHGKSLVLEVQSASGSPFLIARSNVALRFLAENSPAAGLYGETLYEAGLVDQWLDFSFNSLETPAAVMHLPPDAQ--VPLAVKETARREVEGAVRVLDEALEKSTFLAGHKVTLADVGVFCALYDLVGVENAGSM-SIALENFPGVLRWFLTLLHQPCFQHV-SPGEADKMKRLQAKLPSVGSTR------RKLAEGPLAENGNRRPSKAGIAGARATQASAAKSGPAGGGRSSTKPPLLPKDGPDSSLFDRRRTVIKQLLVERG 301          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: CBJ25847.1 (Asparaginyl-tRNA Synthetase [Ectocarpus siliculosus])

HSP 1 Score: 101.3 bits (251), Expect = 5.600e-18
Identity = 64/201 (31.84%), Postives = 103/201 (51.24%), Query Frame = 0
Query:   13 ESYQTRKVALAAALAGVELTTSLQEDPAALAQLVPHGKSLILEV-RSTSSSPL----FLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTV---VVDRFPGVWRWFLTLLHQPLF 206
            + Y+ RK+ + A +AG++L          +    P  K L+L+V R   ++P+     + +SNA LR LA     + LYG + +E+   DQWL+  +  LEVPA  L     A  S + AV   A+R +L  +   +  L T+TFL G++ ++ADV + C+  DL+     GG  ++    +   P V RW+ T+ H P F
Sbjct:   28 QDYRVRKICVVARMAGIDLDLKTGMSEEEMEAFAPLAKGLVLKVCRPGQAAPVGGEEAVTQSNAILRTLAMAKADSSLYGRSEFESAQADQWLETCWKELEVPAQAL-----AAASGNQAVIAEAKRHLLSFLATANATLSTSTFLVGERTTIADVGLACAARDLIEGSVAGGAASLGARDLAGLPHVLRWYRTVTHHPAF 223          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: CBJ27519.1 (eukaryotic elongation factor-1 B gamma [Ectocarpus siliculosus])

HSP 1 Score: 91.3 bits (225), Expect = 5.800e-15
Identity = 67/201 (33.33%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   14 SYQTRKVALAAALAGVELTT------SLQEDPAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVDRFPGVWRWFLTLLHQPLFQKV 209
            +++  KV +AA   GVEL        S  + P  LA+  P G+  +LE    S     +  SNA  R++A       LYG + +E+  VD W+DF  + +E+PAT+   P       +DA    A+ ++  A+G L+KAL   T+L GDK++LAD+ +  +    LV   +  V       FP V RWF T ++QP F+ V
Sbjct:   11 NFRAFKVLIAAEYNGVELEVPEFNHPSDSKSPDFLAK-SPLGRVPVLETPQGS-----IFESNAIARYVARMRRDTELYGVSFFESAQVDSWIDFCAHEIELPATIWCYPVIGYMPYNDAAVSKAKEDLKIALGALEKALLHRTYLVGDKITLADITVASA----LVYPMKLVVSPEYRKAFPCVTRWFTTCVNQPQFKAV 201          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: XP_004341586.1 (elongation factor 1-gamma family protein [Acanthamoeba castellanii str. Neff] >ELR19500.1 elongation factor 1-gamma family protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 89.4 bits (220), Expect = 2.200e-14
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 0
Query:   59 TSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVD-----RFPGVWRWFLTLLHQPLFQKV 209
            T   PLF   SNA  R+ A    ++ +YG + YEA L+DQW+DFS N +E+PA+    P       +    E A+ +I  A+ +L+K L   T+L G+++SLAD+ +  +L+ L          T+V+D      +  V RWFLT ++QP F+ V
Sbjct:   58 TPEGPLF--ESNAIARYAARYGGSSKIYGSSPYEASLIDQWIDFSANEIELPASAWLYPIFEIVPFNAEATERAKADIKKALELLNKHLTYRTYLVGERVSLADIVVSMALYRLY---------TMVLDITFRKNYGNVNRWFLTCVNQPQFRTV 201          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: EWM21126.1 (elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 6.500e-14
Identity = 62/198 (31.31%), Postives = 105/198 (53.03%), Query Frame = 0
Query:   11 PGESYQTRKVALAAALAGVELTTSLQEDPAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVDRFPGVWRWFLTLLHQPLFQKV 209
            PG +++  K+ +AA   GV++   +  D AA  +     KS   +V    +    L  SNA  R++A       LYG + +++GLVD W+DF+   +E+PAT+   P       + AV E A+ ++  A+ +LD  L   T+L G+K++LAD+ +  +    LV   +  +      ++P V RWFLT+++QP F+ V
Sbjct:    9 PG-NFRAFKILVAALYNGVDIDV-VDLDLAAKKRTDVLAKSPAGKVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDAWIDFAAQEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAAMEILDNHLADKTYLVGEKVTLADITVASA----LVYPYKIVMSPEYRAQYPHVLRWFLTIVNQPHFRAV 200          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: PFH37632.1 (putative elongation factor 1-gamma [Besnoitia besnoiti])

HSP 1 Score: 87.8 bits (216), Expect = 6.500e-14
Identity = 75/216 (34.72%), Postives = 108/216 (50.00%), Query Frame = 0
Query:    7 RLRAPGESYQTRKVALAAALAGVELTT------SLQEDPAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGV-PTVVVDRFPGVWRWFLTLLHQPLFQKVAAPNAAA 216
            +L  P +  + RKV L AA   + L T         +DPA LA+  P G+  +LE  S  +  + L  SNA  R+LA      GLYGETL E G VD WLDFS   +EVP   L      QG     V E A+ ++  A+  ++  L T TF+ G+ +++AD+   C +  L      G V    ++ + P + RW+ TL++Q  F+KV     AA
Sbjct:    5 KLLTPKDDVRGRKVQLVAAFLDLALQTPPFTVGKDDKDPAFLAK-SPLGRLPLLE--SELAGGVCLVESNAICRYLARLRADKGLYGETLAEQGEVDMWLDFSTLEVEVPMCCL-----VQGG---KVAERAQSDLTRALTAVNAHLKTRTFMVGENITIADL---CLVTVLSYGFRSGKVDEQSILAKHPHLKRWYETLVNQKAFKKVFGEAKAA 206          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: CCA15330.1 (calciumdependent protein 1 putative [Albugo laibachii Nc14])

HSP 1 Score: 87.4 bits (215), Expect = 8.400e-14
Identity = 69/215 (32.09%), Postives = 106/215 (49.30%), Query Frame = 0
Query:    1 MSASTFRLRAPGESYQTRKVALAAALAGV-------ELTTSLQEDPAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVDRFPGVWRWFLTLLHQPLFQKV 209
            + AS  +L +   +Y+  K+ +AA   GV       ++TT   ++  A     P GK  +LE  + S     L  SNA  R++A     +GL G T +E+G VD W+DFS + LEVP  +   P       +   K  A  ++  A+ VL+  L   T+L G++++LAD+ I      LLV   +  +       +  V RWF TL++QP FQKV
Sbjct:   11 LPASKMKLYSYPGNYRVFKILIAAEYNGVDIEVPEFDMTTIKSKEFLAKN---PLGKVPVLETENGS-----LFESNAIARYVARLRADSGLSGRTFFESGQVDSWMDFSAHELEVPLQMWLYPVFGYMKFNAGTKAKAMEDVKKALQVLENHLHLRTYLVGEQITLADIVI----ASLLVYPMKMLMDKEFRKPYSAVNRWFNTLVNQPEFQKV 213          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: XP_024579888.1 (elongation factor 1- [Plasmopara halstedii] >CEG43519.1 elongation factor 1- [Plasmopara halstedii])

HSP 1 Score: 86.7 bits (213), Expect = 1.400e-13
Identity = 60/171 (35.09%), Postives = 84/171 (49.12%), Query Frame = 0
Query:   40 AALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSL--HDLLVRGNEGGVPTVVVDRFPGVWRWFLTLLHQPLFQKV 209
            +A     P GK  +LE   T    +F   S A  R++A   P  GLYG+T +E+G +D W+DFS   LEVP  V   P    G    A    A+ ++   +  L+  L   T+L G++++LAD+ +  SL      V   E   P      FP V RWF TL++QP FQ V
Sbjct:    8 SAFKSKTPIGKVPLLE---TEEGCIF--ESGAIARYIARLRPDLGLYGKTFFESGQIDGWIDFSAFELEVPLEVWVHPILGVGKFHAAASTKAKADVRKVLQTLENHLHLRTYLVGEQVTLADIVVASSLVYPFKFVLDKEFRKP------FPAVIRWFTTLVNQPEFQAV 167          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: XP_009519320.1 (hypothetical protein PHYSODRAFT_359164 [Phytophthora sojae] >EGZ24032.1 hypothetical protein PHYSODRAFT_359164 [Phytophthora sojae])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 0
Query:   11 PGESYQTRKVALAAALAGVELTT---SLQED--PAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSL--HDLLVRGNEGGVPTVVVDRFPGVWRWFLTLLHQPLFQKV 209
            PG +Y+  KV +AA   G+ +      + +D    +     P GK  +LE +  +     +  S A  R++A   P  GLYG+T +E+G VD W+DFS   LEVP  V   P    G  + A    A+ ++  A+  L+  L   T+L G++++LAD+ +  +L      V   E   P   V+      RWF TL++QP FQ V
Sbjct:   55 PG-NYRVFKVLIAAEYNGIHIELPKFDMAKDLKTKSFKAKTPVGKVPVLETKEGT-----IFESGAIARYIARLRPDTGLYGKTFFESGQVDSWIDFSAYELEVPLEVWVHPILGVGKFNAAALTKAKADVKKALQTLENHLHLRTYLVGEQITLADIVVASALVYPFKFVLDKEFRKPYTAVN------RWFATLVNQPEFQAV 247          
BLAST of NO24G00490 vs. NCBI_GenBank
Match: XP_004353907.1 (glutathione S-transferase domain-containing protein [Cavenderia fasciculata] >EGG14498.1 glutathione S-transferase domain-containing protein [Cavenderia fasciculata])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 66/211 (31.28%), Postives = 97/211 (45.97%), Query Frame = 0
Query:   19 KVALAAALAGVELTT---SLQED--PAALAQLVPHGKSLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWLDFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTATFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVD-----RFPGVWRWFLTLLHQPLFQKVAAPNAAATIKA 220
            K  +AA   GVE+       Q+D   A   ++ PHGK   + V  T    +F   SN+  R++A       +YG   YEA ++DQWLDF+ N +E  A     P       +    + A+  +   +  LD  L T++FL G ++SLAD+ + CSL             T+V D      F  V RWF T ++QP F+ V      AT+ A
Sbjct:   16 KALIAAKYVGVEIEVPAFDFQKDSKSAEFLKVAPHGK---VPVMVTEKGSIF--ESNSIARYVAR--LGGKIYGSDAYEASVIDQWLDFATNEVEASAVAWLYPIMGFVKFNPEATQKAKENVKRLLTTLDNHLKTSSFLVGPRVSLADIVVACSLSTFY---------TMVFDPSFRSPFVNVNRWFTTCINQPNFKSVMGEVKFATVMA 210          
The following BLAST results are available for this feature:
BLAST of NO24G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24295.12.400e-7755.63asparaginyl-trna synthetase [Nannochloropsis gadit... [more]
CBJ25847.15.600e-1831.84Asparaginyl-tRNA Synthetase [Ectocarpus siliculosu... [more]
CBJ27519.15.800e-1533.33eukaryotic elongation factor-1 B gamma [Ectocarpus... [more]
XP_004341586.12.200e-1435.48elongation factor 1-gamma family protein [Acantham... [more]
EWM21126.16.500e-1431.31elongation factor 1 [Nannochloropsis gaditana][more]
PFH37632.16.500e-1434.72putative elongation factor 1-gamma [Besnoitia besn... [more]
CCA15330.18.400e-1432.09calciumdependent protein 1 putative [Albugo laibac... [more]
XP_024579888.11.400e-1335.09elongation factor 1- [Plasmopara halstedii] >CEG43... [more]
XP_009519320.11.900e-1331.71hypothetical protein PHYSODRAFT_359164 [Phytophtho... [more]
XP_004353907.12.500e-1331.28glutathione S-transferase domain-containing protei... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004807NSK004807Nannochloropsis salina (N. salina CCMP1776)gene
NSK002889NSK002889Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00490.1NO24G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531313gene_7278Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g2gene9284Nannochloropsis gaditana (N. gaditana B-31)gene
ASNRSgene6163Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00490.1NO24G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00490 ID=NO24G00490|Name=NO24G00490|organism=Nannochloropsis oceanica|type=gene|length=942bp
ATGTCGGCCTCTACCTTCCGCCTCCGCGCGCCCGGGGAGAGCTACCAGAC
GCGCAAGGTCGCTTTGGCCGCCGCTTTGGCAGGCGTCGAACTCACAACAA
GCCTTCAAGAAGACCCCGCAGCCCTTGCCCAACTGGTCCCGCATGGCAAG
TCTTTGATTCTTGAAGTGCGATCTACATCATCATCACCATTGTTTCTTGC
CCGGAGCAATGCAGCCTTGCGTTTCCTGGCGGAGAATGCACCGGCCGCGG
GCTTGTACGGCGAGACCCTGTATGAAGCTGGCCTAGTGGATCAATGGCTG
GACTTCTCGTTCAATAGTCTTGAGGTCCCTGCGACGGTGCTGCGCTTACC
TACGGCGGCCCAGGGATCTGTGTCGGATGCCGTGAAGGAGACGGCCCGAC
GGGAAATTTTGGGGGCAGTGGGTGTGCTTGACAAGGCGTTGGGAACAGCG
ACGTTTTTGGCCGGGGATAAGTTGAGCTTGGCGGACGTGGCCATATTTTG
TTCCTTACACGATTTGCTGGTCAGAGGAAACGAGGGCGGGGTACCTACAG
TTGTTGTTGATCGTTTTCCCGGGGTGTGGCGCTGGTTTTTGACCTTGTTA
CACCAGCCATTGTTTCAGAAGGTGGCCGCGCCTAATGCGGCTGCTACAAT
CAAGGCCTTCGAGGCGAGGCTACCTAAGGTGGGCTCGTCAAAAACTGGGG
GTGGGAATGGAGCCAAACACAGCAGCATTGAAGCAGGGGATGACAAGAAG
AGGGGTAGAGCAGCTGCTGGCGCTGGTGCAGTCGCGGCCAAGGCGGCGTG
TTCGAACACCACAGGCAGCAGCAGCAGCAGTACAGGCGCCAGCAGACCTC
CTCTCGTCCTAAAGGATGGTCCCGCTTCCTCTTTATTCCGGCGTGGTCGA
ACTGTCATCAAAGAGATTCTGGTGGAGGTTGGGGGGGGGTAG
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protein sequence of NO24G00490.1

>NO24G00490.1-protein ID=NO24G00490.1-protein|Name=NO24G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MSASTFRLRAPGESYQTRKVALAAALAGVELTTSLQEDPAALAQLVPHGK
SLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWL
DFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTA
TFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVDRFPGVWRWFLTLL
HQPLFQKVAAPNAAATIKAFEARLPKVGSSKTGGGNGAKHSSIEAGDDKK
RGRAAAGAGAVAAKAACSNTTGSSSSSTGASRPPLVLKDGPASSLFRRGR
TVIKEILVEVGGG*
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Synonyms
Publications