NO24G00450, NO24G00450 (gene) Nannochloropsis oceanica

Overview
NameNO24G00450
Unique NameNO24G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length507
Alignment locationchr24:149263..149769 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:149263..149769 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
[Close]
BLAST of NO24G00450 vs. NCBI_GenBank
Match: EWM24303.1 (hypothetical protein Naga_100047g15 [Nannochloropsis gaditana])

HSP 1 Score: 138.7 bits (348), Expect = 1.700e-29
Identity = 68/118 (57.63%), Postives = 90/118 (76.27%), Query Frame = 0 
Query:   21 ELAKKMRLYPQDFLLVKPQIGTFGFAWARGVVSPFVSSKRDKMDNIFAVIGSLLTGSAVVMDVGCGDGAFLLEAA-RFGCQCYGLEIDAVLAELAREKAKEQKKSNLVQIFEGDLFDV 138
            E+A+K+RLYP DFL VKP  GTFGFAW++GVVSPFV +K +K++ I       L+ +AV+MDVGCGDGAFL++AA RFGC+C+G+EID  L   AR +A E + ++L+ IFE DL DV
Sbjct:   33 EIAEKVRLYPDDFLPVKPVRGTFGFAWSKGVVSPFVCTKTEKLEAILDSCAHRLSQNAVLMDVGCGDGAFLMQAARRFGCRCFGVEIDERLVAQARIRATENQLAHLIDIFEYDLCDV 150
The following BLAST results are available for this feature:
BLAST of NO24G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24303.11.700e-2957.63hypothetical protein Naga_100047g15 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002884NSK002884Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00450.1NO24G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00450.1NO24G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00450 ID=NO24G00450|Name=NO24G00450|organism=Nannochloropsis oceanica|type=gene|length=507bp
ATGCATGATTCTGGTATATCAACACCCCTTCAAAGTACTGGTGGGGAGGA
TGACGACCCAGAGCTGGCCAAGAAAATGCGACTGTACCCACAAGACTTCT
TACTGGTGAAGCCTCAGATCGGCACATTCGGGTTTGCCTGGGCGCGAGGC
GTGGTCAGTCCCTTTGTCAGCAGCAAACGAGACAAGATGGACAACATTTT
TGCAGTCATCGGAAGTTTGTTGACCGGGTCCGCGGTGGTGATGGACGTGG
GTTGTGGGGATGGAGCTTTTTTGCTTGAGGCCGCTCGATTTGGCTGTCAG
TGCTACGGACTCGAGATTGATGCAGTGCTCGCAGAGCTTGCGCGGGAGAA
GGCCAAGGAGCAAAAAAAGAGCAATTTAGTTCAGATATTTGAGGGGGATT
TGTTTGATGTTTTGAGTGATTTGAATGCGGAAGAAAGGGGGGGTTTGCGG
AGAGGAAGGAAGAGGGCAGTGGGAGAGATAGTCACGCCCTGGTGGCGGCC
GCCGTAA
back to top

protein sequence of NO24G00450.1

>NO24G00450.1-protein ID=NO24G00450.1-protein|Name=NO24G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MHDSGISTPLQSTGGEDDDPELAKKMRLYPQDFLLVKPQIGTFGFAWARG
VVSPFVSSKRDKMDNIFAVIGSLLTGSAVVMDVGCGDGAFLLEAARFGCQ
CYGLEIDAVLAELAREKAKEQKKSNLVQIFEGDLFDVLSDLNAEERGGLR
RGRKRAVGEIVTPWWRPP*
back to top
Synonyms
Publications