NO24G00450.1, NO24G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00450.1
Unique NameNO24G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length507
Alignment locationchr24:149263..149769 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:149263..149769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00450.1 vs.
Match: EWM24303.1 (hypothetical protein Naga_100047g15 [Nannochloropsis gaditana])

HSP 1 Score: 138.7 bits (348), Expect = 1.700e-29
Identity = 68/118 (57.63%), Postives = 90/118 (76.27%), Query Frame = 0 
Query:   21 ELAKKMRLYPQDFLLVKPQIGTFGFAWARGVVSPFVSSKRDKMDNIFAVIGSLLTGSAVVMDVGCGDGAFLLEAA-RFGCQCYGLEIDAVLAELAREKAKEQKKSNLVQIFEGDLFDV 138
            E+A+K+RLYP DFL VKP  GTFGFAW++GVVSPFV +K +K++ I       L+ +AV+MDVGCGDGAFL++AA RFGC+C+G+EID  L   AR +A E + ++L+ IFE DL DV
Sbjct:   33 EIAEKVRLYPDDFLPVKPVRGTFGFAWSKGVVSPFVCTKTEKLEAILDSCAHRLSQNAVLMDVGCGDGAFLMQAARRFGCRCFGVEIDERLVAQARIRATENQLAHLIDIFEYDLCDV 150
The following BLAST results are available for this feature:
BLAST of NO24G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24303.11.700e-2957.63hypothetical protein Naga_100047g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00450NO24G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00450.1NO24G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00450.1.cds1NO24G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00450.1 ID=NO24G00450.1|Name=NO24G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=507bp
ATGCATGATTCTGGTATATCAACACCCCTTCAAAGTACTGGTGGGGAGGA
TGACGACCCAGAGCTGGCCAAGAAAATGCGACTGTACCCACAAGACTTCT
TACTGGTGAAGCCTCAGATCGGCACATTCGGGTTTGCCTGGGCGCGAGGC
GTGGTCAGTCCCTTTGTCAGCAGCAAACGAGACAAGATGGACAACATTTT
TGCAGTCATCGGAAGTTTGTTGACCGGGTCCGCGGTGGTGATGGACGTGG
GTTGTGGGGATGGAGCTTTTTTGCTTGAGGCCGCTCGATTTGGCTGTCAG
TGCTACGGACTCGAGATTGATGCAGTGCTCGCAGAGCTTGCGCGGGAGAA
GGCCAAGGAGCAAAAAAAGAGCAATTTAGTTCAGATATTTGAGGGGGATT
TGTTTGATGTTTTGAGTGATTTGAATGCGGAAGAAAGGGGGGGTTTGCGG
AGAGGAAGGAAGAGGGCAGTGGGAGAGATAGTCACGCCCTGGTGGCGGCC
GCCGTAA
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protein sequence of NO24G00450.1

>NO24G00450.1-protein ID=NO24G00450.1-protein|Name=NO24G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MHDSGISTPLQSTGGEDDDPELAKKMRLYPQDFLLVKPQIGTFGFAWARG
VVSPFVSSKRDKMDNIFAVIGSLLTGSAVVMDVGCGDGAFLLEAARFGCQ
CYGLEIDAVLAELAREKAKEQKKSNLVQIFEGDLFDVLSDLNAEERGGLR
RGRKRAVGEIVTPWWRPP*
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mRNA from alignment at chr24:149263..149769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00450.1 ID=NO24G00450.1|Name=NO24G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=507bp|location=Sequence derived from alignment at chr24:149263..149769- (Nannochloropsis oceanica)
ATGCATGATTCTGGTATATCAACACCCCTTCAAAGTACTGGTGGGGAGGA
TGACGACCCAGAGCTGGCCAAGAAAATGCGACTGTACCCACAAGACTTCT
TACTGGTGAAGCCTCAGATCGGCACATTCGGGTTTGCCTGGGCGCGAGGC
GTGGTCAGTCCCTTTGTCAGCAGCAAACGAGACAAGATGGACAACATTTT
TGCAGTCATCGGAAGTTTGTTGACCGGGTCCGCGGTGGTGATGGACGTGG
GTTGTGGGGATGGAGCTTTTTTGCTTGAGGCCGCTCGATTTGGCTGTCAG
TGCTACGGACTCGAGATTGATGCAGTGCTCGCAGAGCTTGCGCGGGAGAA
GGCCAAGGAGCAAAAAAAGAGCAATTTAGTTCAGATATTTGAGGGGGATT
TGTTTGATGTTTTGAGTGATTTGAATGCGGAAGAAAGGGGGGGTTTGCGG
AGAGGAAGGAAGAGGGCAGTGGGAGAGATAGTCACGCCCTGGTGGCGGCC
GCCGTAA
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Coding sequence (CDS) from alignment at chr24:149263..149769-

>NO24G00450.1 ID=NO24G00450.1|Name=NO24G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at chr24:149263..149769- (Nannochloropsis oceanica)
ATGCATGATTCTGGTATATCAACACCCCTTCAAAGTACTGGTGGGGAGGA
TGACGACCCAGAGCTGGCCAAGAAAATGCGACTGTACCCACAAGACTTCT
TACTGGTGAAGCCTCAGATCGGCACATTCGGGTTTGCCTGGGCGCGAGGC
GTGGTCAGTCCCTTTGTCAGCAGCAAACGAGACAAGATGGACAACATTTT
TGCAGTCATCGGAAGTTTGTTGACCGGGTCCGCGGTGGTGATGGACGTGG
GTTGTGGGGATGGAGCTTTTTTGCTTGAGGCCGCTCGATTTGGCTGTCAG
TGCTACGGACTCGAGATTGATGCAGTGCTCGCAGAGCTTGCGCGGGAGAA
GGCCAAGGAGCAAAAAAAGAGCAATTTAGTTCAGATATTTGAGGGGGATT
TGTTTGATGTTTTGAGTGATTTGAATGCGGAAGAAAGGGGGGGTTTGCGG
AGAGGAAGGAAGAGGGCAGTGGGAGAGATAGTCACGCCCTGGTGGCGGCC
GCCGTAA
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Synonyms
Publications