NO24G00410, NO24G00410 (gene) Nannochloropsis oceanica

Overview
NameNO24G00410
Unique NameNO24G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1748
Alignment locationchr24:142041..144001 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:142041..144001 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G00410 vs. NCBI_GenBank
Match: XP_005852689.1 (hypothetical protein NGA_0310502 [Nannochloropsis gaditana CCMP526] >EKU23142.1 hypothetical protein NGA_0310502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 324.3 bits (830), Expect = 3.100e-85
Identity = 175/240 (72.92%), Postives = 204/240 (85.00%), Query Frame = 0
Query:    1 MLASSDLPTLALEKADSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPKRP--PVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEADVVERARNLQAEIDVVVKAC 239
            +LA+SDLP LAL KAD+FDYHFMSHLMQRLQ S+D+ EIAALN+VGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHL+ANELD AFDVILN N QQAR  +   GN+AAANILQHLAT+L EERDK+L PPTRLLRMLLR+ DEAERQG+LLEKL+LA  P RP    + E  GEE E+E  WG  +  PE+L Q+L+DFLEE++AFEEE+EA+VV+RA+ L+ EI +VV+AC
Sbjct:   74 LLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHE---GNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEVAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQAC 310          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: EWM24291.1 (hypothetical protein Naga_100047g11 [Nannochloropsis gaditana])

HSP 1 Score: 313.2 bits (801), Expect = 7.200e-82
Identity = 170/240 (70.83%), Postives = 198/240 (82.50%), Query Frame = 0
Query:    1 MLASSDLPTLALEKADSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPKRP--PVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEADVVERARNLQAEIDVVVKAC 239
            +LA+SDLP LAL KAD+FDYHFMSHLMQRLQ S+D+ EIAALN+VGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHL+ANELD AFDVILN N QQAR  +   GN+AAANILQHLAT+L EERDK+L PPTRLLRMLLR+ DEAERQG+LLEKL+LA  P RP              +E  WG  +  PE+L Q+L+DFLEE++AFEEE+EA+VV+RA+ L+ EI +VV+AC
Sbjct:   76 LLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHE---GNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRXXXXXXXXXXXXXEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQAC 312          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: CBJ27164.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.5 bits (249), Expect = 7.400e-18
Identity = 75/237 (31.65%), Postives = 127/237 (53.59%), Query Frame = 0
Query:    4 SSDLPTLALEKADSFDYHFMSHLMQRLQTSSDET-EIAALNQVGEAVNFAMQQRLAKADFILRGILK-SGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPP---KRPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEADVVERARNLQAEIDVVV 236
            S ++     E  D  D+  ++HL  R++    ++ E  AL  V E +N AMQ+RLA AD  LR +L  + D+K ME ++R   +  +++MAF V+++MN+Q  RA D +G  D A  +L HL T +   +D+RL+P  +LLR LLR   +  R+ IL ++L L N     +RPP  ++                 QP  L Q++ D + +++   + ++  + +  + LQ E++ VV
Sbjct:  106 SGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQ--RAKDAEGA-DHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERPPDKDK----------------VQPHLLQQAITDMITQVEDIGQAIDVGMTDSLKGLQVEVNTVV 323          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: XP_005827106.1 (hypothetical protein GUITHDRAFT_113862 [Guillardia theta CCMP2712] >EKX40126.1 hypothetical protein GUITHDRAFT_113862 [Guillardia theta CCMP2712])

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-9
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 0
Query:   23 MSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPKRPPVLNEETGEEEEQEPLW--------GVADTQPEELAQSLKDFLEEIKAFEE 215
            M  L  RLQ  SD ++    N +G+ +     +RL     +L  +L SG++ V++ ++ +++K+ E+D AF ++L+MNI  A+A  TD        +L H+ T + EE +KR  P   LL  LLR  DE   +  LLE  +   P             EEEQE ++          A  +PEEL +++K ++E ++A ++
Sbjct:   73 MQFLAGRLQEESDSSKWQ--NLLGD-IQKLTNERLENGKKLLVDLLNSGEINVLDRRIVENVKSGEIDPAFLIVLDMNINDAQAKATD--EITTNRVLGHIYTRVQEELEKRAKPSLGLLHKLLRLIDEPGIRMNLLEHNLKPKP-------------EEEQEYVYVDGKLIKDSGALVKPEELVEAIKLYMERVRALDQ 254          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: CBJ31091.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-9
Identity = 65/229 (28.38%), Postives = 111/229 (48.47%), Query Frame = 0
Query:   16 DSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLE------KLVLANPPKRPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFL-------EEIKAFEEELEADVVERARNLQAEI 232
            D  D  F++ L Q+ Q +      AAL ++G+++N  MQ+R+A+A   L+ IL  G+ + ME  ++   +  E+D A  ++L  N+QQ  A++ D G   A  +L+ L        D+++ P  RL+R LLRAKD   R  IL +      K+VLA+            G E  + P     D  P +  +++K  +       E    F ++L+ D++  A  +  E+
Sbjct:   69 DQVDIQFLTLLNQKAQEAEGTDAAAALTRLGDSINNTMQRRMAQASERLQKILTVGNPERMEETIKAMAERGEVDDALVLLLQANLQQ--AEEADAG--PAVGVLKRLGAAAQAALDEKVDPEKRLVRQLLRAKDREARLNILTKAFRQRAKVVLAD------------GSETSEAP-----DVAPPKFIETVKGIIRNFGNVGESELGFAQQLD-DMISEAEQVATEL 275          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: GAX23767.1 (hypothetical protein FisN_12Hh345 [Fistulifera solaris])

HSP 1 Score: 67.4 bits (163), Expect = 6.900e-8
Identity = 70/226 (30.97%), Postives = 107/226 (47.35%), Query Frame = 0
Query:   16 DSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRL-SPPTRLLRMLLRAKDEAERQGILLE----KLVLANPPKRPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEI--KAFEEELEADVVERARNLQAEIDVV 235
            D FD  F+  L +R   S+ E + A L     A+    Q+R+AKA  +L+ +L  G+   ME  + K ++  E+D AF ++L  N  QAR      G +  A +++ L    ++E+DK+L S   RL+R LLR  D A R+ IL +    K VL  P           GE  +QE    V D  P +   + K  L        ++E   D+  R + L +E +VV
Sbjct:  234 DQFDAQFVKVLNER--ASNGENDAAELL---AALAVEQQKRMAKAAELLKSVLSLGEPARMEGALIKKVREGEVDEAFLLLLEANENQARI----AGANGPAELMKRLRLRAADEKDKQLSSKEIRLIRKLLRTDDAAAREQILEDAFTPKTVLLVPGTAENAQKAVDGEAPDQEK--PVPDVPPPDFINACKAVLLNFGNLGSDDENRGDLASRIKKLASEAEVV 448          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: OSX69489.1 (hypothetical protein BU14_1464s0002 [Porphyra umbilicalis])

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-7
Identity = 63/229 (27.51%), Postives = 108/229 (47.16%), Query Frame = 0
Query:    9 TLALEKA-DSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPKRPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEADVVERARNLQAEIDVVVK 237
            T A+ +A +  D  F+ HL Q+   +S + E A +  V  AV   M  R++ A    + ++ +GD + M  ++   L+  E+D AF ++L  N++QA+A     G   A  +L  L    +E RD R+ P   L+R LLR  D  ER+ +L   L     P++   L + +          GV     ++L  +L+  +E+       ++A +VER   L  E + V +
Sbjct:  180 TAAVRRAYNRVDMRFLQHLAQKNLDASTDAERAEIEAVQAAVTQEMTVRMSAASAAFKSVVTAGDEEAMYRQLALLLQKGEMDEAFLLLLAGNLEQAKA----AGVAPAVEVLNRLQKRTAELRDNRVPPEVALVRKLLRTPDAVERKAMLTAALT----PRKKIALADGSSSA-------GVV-VDGKKLVVALRRLVEDF----GNVDASIVERVDALGLEAEAVAR 388          
BLAST of NO24G00410 vs. NCBI_GenBank
Match: GAX14954.1 (hypothetical protein FisN_12Lh345 [Fistulifera solaris])

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7
Identity = 69/226 (30.53%), Postives = 107/226 (47.35%), Query Frame = 0
Query:   16 DSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRL-SPPTRLLRMLLRAKDEAERQGILLE----KLVLANPPKRPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEI--KAFEEELEADVVERARNLQAEIDVV 235
            D FD  F+  L +R   S+ E + A L     A+    Q+R+A+A  +L+ +L  G+   ME  + K ++  E+D AF ++L  N  QAR      G +  A +++ L    ++E+DK+L S   RL+R LLR  D A R+ IL +    K VL  P           GE  +QE    V D  P +   + K  L        ++E   D+  R + L +E +VV
Sbjct:  234 DQFDAQFVKVLNER--ASNGENDAAELL---AALAVEQQKRMARAAELLKSVLSLGEPARMEGALIKKVREGEVDEAFLLLLEANENQARI----AGANGPAELMKRLRLRAADEKDKQLSSKEIRLIRKLLRTDDAAAREQILEDAFTPKTVLLVPGTAENAQKAVDGEAPDQEK--PVPDVPPPDFINACKAVLLNFGNLGSDDENRGDLASRIKKLASEAEVV 448          
The following BLAST results are available for this feature:
BLAST of NO24G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_005852689.13.100e-8572.92hypothetical protein NGA_0310502 [Nannochloropsis ... [more]
EWM24291.17.200e-8270.83hypothetical protein Naga_100047g11 [Nannochlorops... [more]
CBJ27164.17.400e-1831.65conserved unknown protein [Ectocarpus siliculosus][more]
XP_005827106.12.100e-930.50hypothetical protein GUITHDRAFT_113862 [Guillardia... [more]
CBJ31091.12.800e-928.38conserved unknown protein [Ectocarpus siliculosus][more]
GAX23767.16.900e-830.97hypothetical protein FisN_12Hh345 [Fistulifera sol... [more]
OSX69489.11.200e-727.51hypothetical protein BU14_1464s0002 [Porphyra umbi... [more]
GAX14954.11.500e-730.53hypothetical protein FisN_12Lh345 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002878NSK002878Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00410.1NO24G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00410.2NO24G00410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598057gene_7269Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g11gene6153Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00410.1NO24G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00410.2NO24G00410.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00410 ID=NO24G00410|Name=NO24G00410|organism=Nannochloropsis oceanica|type=gene|length=1748bp
ACAGACCATGCATCTACCCTTATGCCGAGTCCTGGCGCTCCTGGTCATCA
CCCCTAGCTTCTATGCTTTCCTCTTCTCCGCCGCTCCAGGCCCGTTGCAG
CATGACCGACTGCAGCAGGGACTAAGGCAATGTACGCCCTCGACAGCAGC
AAGCCCTGGAGCCCGTGTCCCGTCCACAATTTTGCTTGCGGCTGAGACCG
GCGTATCAAAAGCGGCGGATGCCGAGAAgtaagccggatacgaggggagg
gaggaagggattattgcaattctcatccccgggagggagttgaagtatcc
ttcatgcatgtgctcgacatacacccaccaaccccgtattcgtcatcccc
cctccctttctctctacatcagcgtttgaccgccttgtctcctcgggccg
ttactctttagctgcggaacaagccgatgaccattacctcatgagtctcc
ctccccccctcctcgccctacctccctccctatctccctctctcctccct
ttcttccccaaagATTTGACAAGCTCATTACCGAAATGCTGGCGTCATCA
GATCTCCCTACACTGGCCCTTGAGAAAGCTGACTCGTTCGACTATCACTT
TATGAGCCATCTCATGCAGCGTCTGCAGACCTCCTCAGACGAAACCGAGA
TTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAATTTTGCCATGCAGCAG
AGACTGGCCAAGGCTGATTTTATTCTACGGGGGATCTTGAAGAGTGGGGA
CCTGAAGgtagggaggtagggagggaggagggggcatggagtcgtgtgtg
tgtgtgtgtgggtgtgcgggtgtgagtttgtgggtgtgtgtgtgtgtgtt
tgtgtgtgtgtgtgggtgggtgggtgggttggtgaattatccccccaaag
tgattcattttgatgtcttcgaccctcttttccttctcctctccctcttc
ccctctccttcttccctgacccattttagGTCATGGAAGCCAAAATGCGG
AAACACCTCAAAGCTAACGAACTGGACATGGCCTTCGATGTCATCCTCAA
CATGAACATCCAACAAGCCCGGGCCGACGACACCGATGGAGGGAACGACG
CCGCTGCCAATATTTTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGA
GACAAACGCCTCTCCCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGC
GAAGGACGAGGCGGAACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCG
CCAACCCTCCCAAGCGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAG
GAGGAGCAGGAACCTTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCT
CGCACAGTCATTGAAAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGG
AGCTGGAGGCGGACGTGGTCGAGAGAGCAAGGAACCTTCAGGCGGAGATC
GACGTGGTGGTAAAGGCTTGTGCGTGAGATTTACGATGGGGTGTAATCGG
TAGAGGGGGTGAAACAGATTTCAGAAATTACAATTAAAGGATCAATCAAT
CAATCAATCAATCATAAAAAGAAAAAAAACGTAAAAATGGCTATGGCAAC
AGCCACAGCTACAGCAGCAACAGCAACAACGATAGTAACAGCACCAGTAC
CAGTACCCGCACTAACACTAGCTACAGCTACAGCTACAGCTACAGCTACA
GCTTTAGCTACAGCAGCAAAGTGCTTTTGCGAGCTTAACATCACAGAA
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protein sequence of NO24G00410.1

>NO24G00410.1-protein ID=NO24G00410.1-protein|Name=NO24G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLASSDLPTLALEKADSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVN
FAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMN
IQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKD
EAERQGILLEKLVLANPPKRPPVLNEETGEEEEQEPLWGVADTQPEELAQ
SLKDFLEEIKAFEEELEADVVERARNLQAEIDVVVKACA*
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protein sequence of NO24G00410.2

>NO24G00410.2-protein ID=NO24G00410.2-protein|Name=NO24G00410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MHLPLCRVLALLVITPSFYAFLFSAAPGPLQHDRLQQGLRQCTPSTAASP
GARVPSTILLAAETGVSKAADAEKFDKLITEMLASSDLPTLALEKADSFD
YHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILK
SGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANI
LQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPK
RPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEAD
VVERARNLQAEIDVVVKACA*
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Synonyms
Publications