NO24G00410.1, NO24G00410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00410.1
Unique NameNO24G00410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1739
Alignment locationchr24:142041..144001 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:142041..144001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00410.1 vs.
Match: XP_005852689.1 (hypothetical protein NGA_0310502 [Nannochloropsis gaditana CCMP526]; EKU23142.1 hypothetical protein NGA_0310502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 324.3 bits (830), Expect = 3.100e-85
Identity = 175/240 (72.92%), Postives = 204/240 (85.00%), Query Frame = 0 
Query:    1 MLASSDLPTLALEKADSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPKRP--PVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEADVVERARNLQAEIDVVVKAC 239
            +LA+SDLP LAL KAD+FDYHFMSHLMQRLQ S+D+ EIAALN+VGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHL+ANELD AFDVILN N QQAR  +   GN+AAANILQHLAT+L EERDK+L PPTRLLRMLLR+ DEAERQG+LLEKL+LA  P RP    + E  GEE E+E  WG  +  PE+L Q+L+DFLEE++AFEEE+EA+VV+RA+ L+ EI +VV+AC
Sbjct:   74 LLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHE---GNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEVAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQAC 310
The following BLAST results are available for this feature:
BLAST of NO24G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852689.13.100e-8572.92hypothetical protein NGA_0310502 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00410NO24G00410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00410.1NO24G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00410.1.cds1NO24G00410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00410.1.cds2NO24G00410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00410.1 ID=NO24G00410.1|Name=NO24G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp
GTGGCGAGGCTGGTAGTGGGGTCTTTATATGGGTGCGTTGGTGAAGAGCG
CAGGGCAATAAGAAATGAAAAAAGACGGGAGGCGAGAAATAGGGACATGA
GGCAATACCTCCCCGTCGCTTGAACCATGAGTTAGCTTTTCCATTTCACA
TCGGAGCGCCAATTAACGCAAGGTAGACACGAGATTGACATCCTTTCAAA
TTCCCTCTTCCTGACAGACCATGCATCTACCCTTATGCCGAGTCCTGGCG
CTCCTGGTCATCACCCCTAGCTTCTATGCTTTCCTCTTCTCCGCCGCTCC
AGGCCCGTTGCAGCATGACCGACTGCAGCAGGGACTAAGGCAATGTACGC
CCTCGACAGCAGCAAGCCCTGGAGCCCGTGTCCCGTCCACAATTTTGCTT
GCGGCTGAGACCGGCGTATCAAAAGCGGCGGATGCCGAGAAGTAAGCCGG
ATACGAGGGGAGGGAGGAAGGGATTATTGCAATTCTCATCCCCGGGAGGG
AGTTGAAGTATCCTTCATGCATGTGCTCGACATACACCCACCAACCCCGT
ATTCGTCATCCCCCCTCCCTTTCTCTCTACATCAGCGTTTGACCGCCTTG
TCTCCTCGGGCCGTTACTCTTTAGCTGCGGAACAAGCCGATGACCATTAC
CTCATGAGTCTCCCTCCCCCCCTCCTCGCCCTACCTCCCTCCCTATCTCC
CTCTCTCCTCCCTTTCTTCCCCAAAGATTTGACAAGCTCATTACCGAAAT
GCTGGCGTCATCAGATCTCCCTACACTGGCCCTTGAGAAAGCTGACTCGT
TCGACTATCACTTTATGAGCCATCTCATGCAGCGTCTGCAGACCTCCTCA
GACGAAACCGAGATTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAATTT
TGCCATGCAGCAGAGACTGGCCAAGGCTGATTTTATTCTACGGGGGATCT
TGAAGAGTGGGGACCTGAAGGTCATGGAAGCCAAAATGCGGAAACACCTC
AAAGCTAACGAACTGGACATGGCCTTCGATGTCATCCTCAACATGAACAT
CCAACAAGCCCGGGCCGACGACACCGATGGAGGGAACGACGCCGCTGCCA
ATATTTTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGAGACAAACGC
CTCTCCCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGCGAAGGACGA
GGCGGAACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCGCCAACCCTC
CCAAGCGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAGGAGGAGCAG
GAACCTTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCTCGCACAGTC
ATTGAAAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGGAGCTGGAGG
CGGACGTGGTCGAGAGAGCAAGGAACCTTCAGGCGGAGATCGACGTGGTG
GTAAAGGCTTGTGCGTGAGATTTACGATGGGGTGTAATCGGTAGAGGGGG
TGAAACAGATTTCAGAAATTACAATTAAAGGATCAATCAATCAATCAATC
AATCATAAAAAGAAAAAAAACGTAAAAATGGCTATGGCAACAGCCACAGC
TACAGCAGCAACAGCAACAACGATAGTAACAGCACCAGTACCAGTACCCG
CACTAACACTAGCTACAGCTACAGCTACAGCTACAGCTACAGCTTTAGCT
ACAGCAGCAAAGTGCTTTTGCGAGCTTAACATCACAGAA
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protein sequence of NO24G00410.1

>NO24G00410.1-protein ID=NO24G00410.1-protein|Name=NO24G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLASSDLPTLALEKADSFDYHFMSHLMQRLQTSSDETEIAALNQVGEAVN
FAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLKANELDMAFDVILNMN
IQQARADDTDGGNDAAANILQHLATMLSEERDKRLSPPTRLLRMLLRAKD
EAERQGILLEKLVLANPPKRPPVLNEETGEEEEQEPLWGVADTQPEELAQ
SLKDFLEEIKAFEEELEADVVERARNLQAEIDVVVKACA*
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mRNA from alignment at chr24:142041..144001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00410.1 ID=NO24G00410.1|Name=NO24G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp|location=Sequence derived from alignment at chr24:142041..144001+ (Nannochloropsis oceanica)
GTGGCGAGGCTGGTAGTGGGGTCTTTATATGGGTGCGTTGGTGAAGAGCG
CAGGGCAATAAGAAATGAAAAAAGACGGGAGGCGAGAAATAGGGACATGA
GGCAATACCTCCCCGTCGCTTGAACCATGAGTTAGCTTTTCCATTTCACA
TCGGAGCGCCAATTAACGCAAGGTAGACACGAGATTGACATCCTTTCAAA
TTCCCTCTTCCTGACAGACCATGCATCTACCCTTATGCCGAGTCCTGGCG
CTCCTGGTCATCACCCCTAGCTTCTATGCTTTCCTCTTCTCCGCCGCTCC
AGGCCCGTTGCAGCATGACCGACTGCAGCAGGGACTAAGGCAATGTACGC
CCTCGACAGCAGCAAGCCCTGGAGCCCGTGTCCCGTCCACAATTTTGCTT
GCGGCTGAGACCGGCGTATCAAAAGCGGCGGATGCCGAGAAGTAAGCCGG
ATACGAGGGGAGGGAGGAAGGGATTATTGCAATTCTCATCCCCGGGAGGG
AGTTGAAGTATCCTTCATGCATGTGCTCGACATACACCCACCAACCCCGT
ATTCGTCATCCCCCCTCCCTTTCTCTCTACATCAGCGTTTGACCGCCTTG
TCTCCTCGGGCCGTTACTCTTTAGCTGCGGAACAAGCCGATGACCATTAC
CTCATGAGTCTCCCTCCCCCCCTCCTCGCCCTACCTCCCTCCCTATCTCC
CTCTCTCCTCCCTTTCTTCCCCAAAGATTTGACAAGCTCATTACCGAAAT
GCTGGCGTCATCAGATCTCCCTACACTGGCCCTTGAGAAAGCTGACTCGT
TCGACTATCACTTTATGAGCCATCTCATGCAGCGTCTGCAGACCTCCTCA
GACGAAACCGAGATTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAATTT
TGCCATGCAGCAGAGACTGGCCAAGGCTGATTTTATTCTACGGGGGATCT
TGAAGAGTGGGGACCTGAAGGTAGGGAGGTAGGGAGGGAGGAGGGGGCAT
GGAGTCGTGTGTGTGTGTGTGTGGGTGTGCGGGTGTGAGTTTGTGGGTGT
GTGTGTGTGTGTTTGTGTGTGTGTGTGGGTGGGTGGGTGGGTTGGTGAAT
TATCCCCCCAAAGTGATTCATTTTGATGTCTTCGACCCTCTTTTCCTTCT
CCTCTCCCTCTTCCCCTCTCCTTCTTCCCTGACCCATTTTAGGTCATGGA
AGCCAAAATGCGGAAACACCTCAAAGCTAACGAACTGGACATGGCCTTCG
ATGTCATCCTCAACATGAACATCCAACAAGCCCGGGCCGACGACACCGAT
GGAGGGAACGACGCCGCTGCCAATATTTTGCAGCATCTTGCCACCATGCT
GAGTGAAGAACGAGACAAACGCCTCTCCCCCCCAACCCGCCTCCTCCGCA
TGCTCCTCCGTGCGAAGGACGAGGCGGAACGGCAGGGGATCCTGCTCGAG
AAGCTCGTCCTCGCCAACCCTCCCAAGCGCCCGCCGGTTCTCAACGAGGA
AACGGGGGAGGAGGAGGAGCAGGAACCTTTGTGGGGCGTGGCAGACACCC
AACCAGAGGAGCTCGCACAGTCATTGAAAGATTTTTTGGAGGAAATTAAG
GCGTTCGAGGAGGAGCTGGAGGCGGACGTGGTCGAGAGAGCAAGGAACCT
TCAGGCGGAGATCGACGTGGTGGTAAAGGCTTGTGCGTGAGATTTACGAT
GGGGTGTAATCGGTAGAGGGGGTGAAACAGATTTCAGAAATTACAATTAA
AGGATCAATCAATCAATCAATCAATCATAAAAAGAAAAAAAACGTAAAAA
TGGCTATGGCAACAGCCACAGCTACAGCAGCAACAGCAACAACGATAGTA
ACAGCACCAGTACCAGTACCCGCACTAACACTAGCTACAGCTACAGCTAC
AGCTACAGCTACAGCTTTAGCTACAGCAGCAAAGTGCTTTTGCGAGCTTA
ACATCACAGAA
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Coding sequence (CDS) from alignment at chr24:142041..144001+

>NO24G00410.1 ID=NO24G00410.1|Name=NO24G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr24:142041..144001+ (Nannochloropsis oceanica)
ATGCTGGCGTCATCAGATCTCCCTACACTGGCCCTTGAGAAAGCTGACTC
GTTCGACTATCACTTTATGAGCCATCTCATGCAGCGTCTGCAGACCTCCT
CAGACGAAACCGAGATTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAAT
TTTGCCATGCAGCAGAGACTGGCCAAGGCTGATTTTATTCTACGGGGGAT
CTTGAAGAGTGGGGACCTGAAGGTCATGGAAGCCAAAATGCGGAAACACC
TCAAAGCTAACGAACTGGACATGGCCTTCGATGTCATCCTCAACATGAAC
ATCCAACAAGCCCGGGCCGACGACACCGATGGAGGGAACGACGCCGCTGC
CAATATTTTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGAGACAAAC
GCCTCTCCCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGCGAAGGAC
GAGGCGGAACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCGCCAACCC
TCCCAAGCGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAGGAGGAGC
AGGAACCTTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCTCGCACAG
TCATTGAAAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGGAGCTGGA
GGCGGACGTGGTCGAGAGAGCAAGGAACCTTCAGGCGGAGATCGACGTGG
TGGTAAAGGCTTGTGCGTGA
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Synonyms
Publications