NO24G00400, NO24G00400 (gene) Nannochloropsis oceanica

Overview
NameNO24G00400
Unique NameNO24G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1253
Alignment locationchr24:139781..142066 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:139781..142066 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598051gene_7268Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00400.3NO24G00400.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00400.2NO24G00400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00400.1NO24G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00400.3NO24G00400.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00400.2NO24G00400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00400.1NO24G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00400 ID=NO24G00400|Name=NO24G00400|organism=Nannochloropsis oceanica|type=gene|length=1253bp
AAAGACCCCACTACCAGCCTCGCCACTTCCAGACACGTAGCGCCCAGCAT
CATGTCTTCAGCCGCCGGAAAAGATGAGgtaagtgcaacatcctcagtcc
atggcccacaccagaggacatacaactcgtctcatttatccacctgccca
ccctccctccaccctcttcttcaatcccccttatacacccaaccctccaa
ttgctgccgcccctgtgaagACCAAGACGGCCAAAGGTGCCAAGATTGCC
GACCTGGACGCGGATGAGGCGGGAAAGAAATTCGCAGCGCTTTCTGTGTC
TCAGgtaggtaaacgtaaaacataacgcgctcagatcccagggcatgtgt
agaatacacagggaggcaactggattgatgccgcatgcaaactggtcttc
ttgtaggggaaagtaaaaaggagtgtcggcgcccccaaaatctatacacg
caagccctcacctccagttttctatccacccctcccatcccccacactct
cccacccagGCCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATCCA
CGAGGCCGCCAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAAGA
AGGAGAACAACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGGCA
ACCCCTACTCTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCCGA
GCTCTCCCACCACCACCATCACCACCATCAGCAGCAGCAGCAACACTTCA
ACCGTAACACGCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGACGG
GGGTATGCACCGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCATA
TGGCTATCCGCAGCATGGAGGGTATATATGCATGGAGGGAGGGTGTGAGG
GTAGGATGGGTGTAGGTATGGGTGCACCTACTTACGTGGAGAAAATATTC
TCCGGGTCGTTTGCAGCTTTCTTCTTGTGCTTACTCCCTCACTCTCTCTC
TCCCACACGCTCCCCTTCTCCCTTCCTCTCACCATCTTCTCGGCACACCA
CAGTGCCTATGAGCATCAAGATGGTGCCCAACATCACTTCCATGGAGGAG
GAGGAAGAAATGGCGGTGGTGGTAGCTGGGTGAACCACCACTACCAGCAG
CAGCAGCAGCAGCAGCTGCAGCAGCAGCAGCAAGAGCCTCGAGAGTTCGA
GGCAAATGAGCTTCAGGCATGTTTGCATGTCTGCAATGGTTTATCTCGTC
CTT
back to top

protein sequence of NO24G00400.3

>NO24G00400.3-protein ID=NO24G00400.3-protein|Name=NO24G00400.3|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MSSAAGKDETKTAKGAKIADLDADEAGKKFAALSVSQAASKDNCVTAALI
HEAAKPTGEGENVEEMKKENNDSSSSSSSSSSLATPTLRSAARAFVPRAP
ELSHHHHHHHQQQQQHFNRNTRQQHHYGEGGRGRGYAPGQQHLEGEQYSA
YGYPQHGGYICMEGGCEGRMGVGMGAPTYVEKIFSGSFAAFFLCLLPHSL
SPTRSPSPFLSPSSRHTTVPMSIKMVPNITSMEEEEEMAVVVAG*
back to top

protein sequence of NO24G00400.2

>NO24G00400.2-protein ID=NO24G00400.2-protein|Name=NO24G00400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MSSAAGKDETKTAKGAKIADLDADEAGKKFAALSVSQAASKDNCVTAALI
HEAAKPTGEGENVEEMKKENNDSSSSSSSSSSLATPTLRSAARAFVPRAP
ELSHHHHHHHQQQQQHFNRNTRQQHHYGEGGRGRGYAPGQQHLEGEQYSA
YGYPQHGGYICMEGGCEGRMGVGMGAPTYVEKIFSGSFAAFFLCLLPHSL
SPTRSPSPFLSPSSRHTTVPMSIKMVPNITSMEEEEEMAVVVAG*
back to top

protein sequence of NO24G00400.1

>NO24G00400.1-protein ID=NO24G00400.1-protein|Name=NO24G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MSSAAGKDETKTAKGAKIADLDADEAGKKFAALSVSQAASKDNCVTAALI
HEAAKPTGEGENVEEMKKENNDSSSSSSSSSSLATPTLRSAARAFVPRAP
ELSHHHHHHHQQQQQHFNRNTRQQHHYGEGGRGRGYAPGQQHLEGEQYSA
YGYPQHGGAYEHQDGAQHHFHGGGGRNGGGGSWVNHHYQQQQQQQLQQQQ
QEPREFEANELQELEAAMIEDELRTQGFTDEDIKHLGNLEIQEARERREG
GRGRGGRGRGRGRGVGGGRW*
back to top
Synonyms
Publications