NO24G00400.1, NO24G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00400.1
Unique NameNO24G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1535
Alignment locationchr24:139781..142015 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:139781..142015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00400NO24G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00400.1NO24G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00400.1.cds1NO24G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00400.1.cds2NO24G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00400.1.cds3NO24G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00400.1.cds4NO24G00400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00400.1.cds5NO24G00400.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00400.1 ID=NO24G00400.1|Name=NO24G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
ATGTCTTCAGCCGCCGGAAAAGATGAGACCAAGACGGCCAAAGGTGCCAA
GATTGCCGACCTGGACGCGGATGAGGCGGGAAAGAAATTCGCAGCGCTTT
CTGTGTCTCAGGCCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATC
CACGAGGCCGCCAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAA
GAAGGAGAACAACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGG
CAACCCCTACTCTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCC
GAGCTCTCCCACCACCACCATCACCACCATCAGCAGCAGCAGCAACACTT
CAACCGTAACACGCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGAC
GGGGGTATGCACCGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCA
TATGGCTATCCGCAGCATGGAGGTGCCTATGAGCATCAAGATGGTGCCCA
ACATCACTTCCATGGAGGAGGAGGAAGAAATGGCGGTGGTGGTAGCTGGG
TGAACCACCACTACCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAGCAG
CAAGAGCCTCGAGAGTTCGAGGCAAATGAGCTTCAGGAGCTGGAGGCGGC
CATGATCGAGGACGAGTTGCGGACGCAAGGTTTCACGGATGAGGACATCA
AGCACCTTGGGAATTTGGAGATACAAGAAGCGAGGGAAAGAAGGGAGGGA
GGAAGGGGTCGAGGAGGACGAGGACGGGGGCGAGGGCGAGGGGTTGGAGG
AGGAAGGTGGTAAGGAACTAGGATTTAATAGGCTGATGGCGAGTGAGCAT
GACATGCGTGGAGGAGGAGTAGCATGGCGGTAAGGAAGGAAGGAAGGAAG
AAGGGAGGGAAGGAGGGAGGGGGGTAAAAAGAGAAGCAACCACCCAGCGT
GGGAAGAGAAGGGGGGGGGATGATGCAATTCCCTTCTACGTATATGTGCG
TTTGAGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTG
TGTGTGTGAACGTGGACAATAACGAATGATTGACACAGAAATATTGATAG
CACGGACGTCTCTAATTTGGTAAGAATTAGGGAGGGTGGGAATCAACCAA
AACACACACAGGAAGAGACGGGATTGATAAGTGAGGAGAGAAACGCACAC
AGGTGGGTATGTAAAGATGATGGGTACGCGTGTGTGTGGATGTTTGTGGA
TGTGGATGAAGGGGGGGTGTACGAGTGTATGTGTGTGTGTGGTCTGTTAA
TATCTTTTTATTTCGTGTCACCAACTACAAATCCCAGCAAAAGGGGATAA
AGGTTGAAGGAAGATTAGATTATTGAAGGATGAGGAGAGCGCTGAGGGCA
GAATCAAAAAAATAAAATGTGAGGAGTATATATTTTCGGAGAGAGACCAC
ATATTTATGACTCCCACACCCAAAAACTAAACCCGAAAAAAGATGGATAA
GCTATCTGTGTATGAGTACGCGGAGGGCGGCTGGT
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protein sequence of NO24G00400.1

>NO24G00400.1-protein ID=NO24G00400.1-protein|Name=NO24G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MSSAAGKDETKTAKGAKIADLDADEAGKKFAALSVSQAASKDNCVTAALI
HEAAKPTGEGENVEEMKKENNDSSSSSSSSSSLATPTLRSAARAFVPRAP
ELSHHHHHHHQQQQQHFNRNTRQQHHYGEGGRGRGYAPGQQHLEGEQYSA
YGYPQHGGAYEHQDGAQHHFHGGGGRNGGGGSWVNHHYQQQQQQQLQQQQ
QEPREFEANELQELEAAMIEDELRTQGFTDEDIKHLGNLEIQEARERREG
GRGRGGRGRGRGRGVGGGRW*
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mRNA from alignment at chr24:139781..142015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00400.1 ID=NO24G00400.1|Name=NO24G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp|location=Sequence derived from alignment at chr24:139781..142015- (Nannochloropsis oceanica)
ATGTCTTCAGCCGCCGGAAAAGATGAGGTAAGTGCAACATCCTCAGTCCA
TGGCCCACACCAGAGGACATACAACTCGTCTCATTTATCCACCTGCCCAC
CCTCCCTCCACCCTCTTCTTCAATCCCCCTTATACACCCAACCCTCCAAT
TGCTGCCGCCCCTGTGAAGACCAAGACGGCCAAAGGTGCCAAGATTGCCG
ACCTGGACGCGGATGAGGCGGGAAAGAAATTCGCAGCGCTTTCTGTGTCT
CAGGTAGGTAAACGTAAAACATAACGCGCTCAGATCCCAGGGCATGTGTA
GAATACACAGGGAGGCAACTGGATTGATGCCGCATGCAAACTGGTCTTCT
TGTAGGGGAAAGTAAAAAGGAGTGTCGGCGCCCCCAAAATCTATACACGC
AAGCCCTCACCTCCAGTTTTCTATCCACCCCTCCCATCCCCCACACTCTC
CCACCCAGGCCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATCCAC
GAGGCCGCCAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAAGAA
GGAGAACAACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGGCAA
CCCCTACTCTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCCGAG
CTCTCCCACCACCACCATCACCACCATCAGCAGCAGCAGCAACACTTCAA
CCGTAACACGCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGACGGG
GGTATGCACCGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCATAT
GGCTATCCGCAGCATGGAGGGTATATATGCATGGAGGGAGGGTGTGAGGG
TAGGATGGGTGTAGGTATGGGTGCACCTACTTACGTGGAGAAAATATTCT
CCGGGTCGTTTGCAGCTTTCTTCTTGTGCTTACTCCCTCACTCTCTCTCT
CCCACACGCTCCCCTTCTCCCTTCCTCTCACCATCTTCTCGGCACACCAC
AGTGCCTATGAGCATCAAGATGGTGCCCAACATCACTTCCATGGAGGAGG
AGGAAGAAATGGCGGTGGTGGTAGCTGGGTGAACCACCACTACCAGCAGC
AGCAGCAGCAGCAGCTGCAGCAGCAGCAGCAAGAGCCTCGAGAGTTCGAG
GCAAATGAGCTTCAGGCATGTTTGCATGTCTGCAATGGTTTATCTCGTCC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCGTTC
CCTCCTTCTCCCCTTGACTCGATGGAGGACGAGCACTTACCCTGTCCTTC
CGCGCCTCGCCCCCGCCCTCCCTCTCTTTCCTCCAGGAGCTGGAGGCGGC
CATGATCGAGGACGAGTTGCGGACGCAAGGTTTCACGGATGAGGACATCA
AGCACCTTGGGAATTTGGAGATACAAGAAGCGAGGGAAAGAAGGGAGGGA
GGAAGGGGTCGAGGAGGACGAGGACGGGGGCGAGGGCGAGGGGTTGGAGG
AGGAAGGTGGTAAGGAACTAGGATTTAATAGGCTGATGGCGAGTGAGCAT
GACATGCGTGGAGGAGGAGTAGCATGGCGGTAAGGAAGGAAGGAAGGAAG
AAGGGAGGGAAGGAGGGAGGGGGGTAAAAAGAGAAGCAACCACCCAGCGT
GGGAAGAGAAGGGGGGGGGATGATGCAATTCCCTTCTACGTATATGTGCG
TTTGAGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTG
TGTGTGTGAACGTGGACAATAACGAATGATTGACACAGAAATATTGATAG
CACGGACGTCTCTAATTTGGTAAGAATTAGGGAGGGTGGGAATCAACCAA
AACACACACAGGAAGAGACGGGATTGATAAGTGAGGAGAGAAACGCACAC
AGGTGGGTATGTAAAGATGATGGGTACGCGTGTGTGTGGATGTTTGTGGA
TGTGGATGAAGGGGGGGTGTACGAGTGTATGTGTGTGTGTGGTCTGTTAA
TATCTTTTTATTTCGTGTCACCAACTACAAATCCCAGCAAAAGGGGATAA
AGGTTGAAGGAAGATTAGATTATTGAAGGATGAGGAGAGCGCTGAGGGCA
GAATCAAAAAAATAAAATGTGAGGAGTATATATTTTCGGAGAGAGACCAC
ATATTTATGACTCCCACACCCAAAAACTAAACCCGAAAAAAGATGGATAA
GCTATCTGTGTATGAGTACGCGGAGGGCGGCTGGT
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Coding sequence (CDS) from alignment at chr24:139781..142015-

>NO24G00400.1 ID=NO24G00400.1|Name=NO24G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at chr24:139781..142015- (Nannochloropsis oceanica)
ATGTCTTCAGCCGCCGGAAAAGATGAGACCAAGACGGCCAAAGGTGCCAA
GATTGCCGACCTGGACGCGGATGAGGCGGGAAAGAAATTCGCAGCGCTTT
CTGTGTCTCAGGCCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATC
CACGAGGCCGCCAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAA
GAAGGAGAACAACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGG
CAACCCCTACTCTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCC
GAGCTCTCCCACCACCACCATCACCACCATCAGCAGCAGCAGCAACACTT
CAACCGTAACACGCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGAC
GGGGGTATGCACCGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCA
TATGGCTATCCGCAGCATGGAGGTGCCTATGAGCATCAAGATGGTGCCCA
ACATCACTTCCATGGAGGAGGAGGAAGAAATGGCGGTGGTGGTAGCTGGG
TGAACCACCACTACCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAGCAG
CAAGAGCCTCGAGAGTTCGAGGCAAATGAGCTTCAGGAGCTGGAGGCGGC
CATGATCGAGGACGAGTTGCGGACGCAAGGTTTCACGGATGAGGACATCA
AGCACCTTGGGAATTTGGAGATACAAGAAGCGAGGGAAAGAAGGGAGGGA
GGAAGGGGTCGAGGAGGACGAGGACGGGGGCGAGGGCGAGGGGTTGGAGG
AGGAAGGTGGTAA
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Synonyms
Publications