NO24G00300, NO24G00300 (gene) Nannochloropsis oceanica

Overview
NameNO24G00300
Unique NameNO24G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2584
Alignment locationchr24:100018..102601 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:100018..102601 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00300.1NO24G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00300.1NO24G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00300 ID=NO24G00300|Name=NO24G00300|organism=Nannochloropsis oceanica|type=gene|length=2584bp
ATGAAAGCTATTCGGAAGAAATATGTGGGGAGAAGGCCCAGCGCTGTCGC
CTCGCCAAGgtaaggaaggaaggggggaggaaagggggaggaagggaggg
taggaaggaaggaggataggaaggagggaaggaggaagagagggaagagg
tgtatgtcaactttcctccctcccttcctcctcccttacccccggatagG
CCGCGTGTTATCCGTAGCGCTAGCAGCAGCAGCGCTAGCAGTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGTACCGCCATCACCACTACCAGCA
CCAGCAGTACCCTCCCTCCTTCCATCCCGTCCTCCTCCCCCTCCTCCTCC
CCTCCTCATCCACCTCATTCCCTCCTCACGgtgcgtgcactcaaggaaga
acatcggctcaggcccgacggctgcttcgagggagcgagggaatgtcata
cactcatctagtctgctcatactttacagGGCATCCCAAGCTTGTCGACC
CGGTCATGGCCACCGGCATTGACGAGGACGAGGAAGGAGACTTCGACCAC
GGCTTCCTTCAATGGGGCCCTgtctgctcctccctccctccccttctccc
tcccccgccctccgactcgaccacgcagtcattttcttcatcgtcacttc
tctcgtccgcttcttcttctccgagcaagaagcagcggatcacctatttt
ccctcccccccccctcctcctcctccttctcctccacgggggcagagggg
agggaggtataaacatggcatggatgacatgtgcatgaggaagcccgaag
ggagtgaaaactggaagagtgagtgtatgaggatttggatatatatatga
gtgttgtggaggggttgacgtgagtcagaaatcacaaaaaaatgcaccga
attagagagggctccatgaagaaagtagtggcatgttttgatgttgtgag
gtttggtagaagaaatgcaagaaacgaattaaaattaacgataaaagtgt
gtggacacttccagccagcttttccccttatctctgcgttgccccacacc
atggacggtagcaagcaaagggaaacagagaaagcgtcttcccaaatacc
ccttttccatttgtttttgtcgttgtgcctccaagtaaagtagagcaggg
ctgcgcacaatgcaagggacaatgtgttatcatctcaggaacgtatattt
tgacgaacacgaggtgtcctcacgaggtgtccagccgtcgcggcccatgc
tctgtaaagggttattatcatatggtaatgaaggcaatcattgcttgctg
ttgggcttgtggtctcagttgtagaatgaaaggagttccaaagttatgtc
gagtgttgcttgacgtttcggcccgctcctgcgcatgtctcaacatcgtc
ctcctcttctcttccctcctcctcacccctcctgtccatacatacaggca
catgcctctaccaccgccctcgtcccaagCACCAGCAGCAGTGCAAGTAC
AAGTACCACCTCCCCCCTCCCTCCTCCTCTATACCAGCCACAGACCTTTG
CCCTGGCCGTGGCTGTCGCACTCATCCGCCTCCGCGAGAAGGCAGCCCTA
CGCCGTAAACGAAAGCTTCCATCCCCTCTCCTCCCCACCCGCCCTTCCAC
CCTCCCTCCTCCTCCACCAGTGCGAGGAGGAGGTGCTTTGCTCATGTCAC
TCCCGGACGAGCTAGAGGGATGCCTGCGAACGCGAGAACTAGCCTCGGCC
TTGGAAAACGTTTGCTTCCTGCTACCTTCTAAGGATGGGAGGATGAGCGA
GGGAGGCATGGAGGGTGAGGAGGCGGGAAGGAGAAACAAGGAAGGGGGCC
AAGAAAAGGGAATGGAAGGATATGCGTACCTGAAGGCGTGCCTTGTACAC
GCTCAGACAGGAGAAAGACATGGAGGAGAAGGAGAAAGAAGAGAAGGAGG
GGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAAGGAGTGCGGGAAGACAGG
AAGGAGGGTGGGAAGGAAGCAAGCCCTGCTCTCCCCTCCAGGCTGTAACG
CTAGGTCTCTTCAGCTATTTTCTTCTTCCTTCTCAAAAAGAGGCGGGGAG
GGAAAAAGGGAAGGAGGACTTGCTCCAGCATCCCTCCCCACATCTTCTCC
TACGAGCCGTTGCCCTGTACCATAGCCTGCTCCAAGAATCTCTCCCTCCC
TCCCTCTCTCTCTCCCTCCCTCATTCCCTCCCCCTTGACCTCCACGCTAT
CGAGGCAGGCCTAGCCCACTCCCTGATCCGCTTTGGTCGACACGTCCTCC
TGCTAACCCCTCCCTCCCTCCCTCCATCCATCCCTCCCTCTCTCCTCGAA
GCCCTTCCCTCCCTCTTGGACCTGTATGAGACCATAATACTGTCCCGCGT
GCGTCTGTGGACGGGGGAGGGAGGGGGAGAGGGAGGGATGGAGGGTGTGA
TTGAGAGACTGGTCCGAGTGGCACTGGCGCTCAGGCCGCTTCGACTCGCG
GAGGCCTACGTGTGGACGAGCGTCGGGAGGGTGAAAGCGGAGGTGGTGAG
GAAGGGAGGGAGGGAGGGGGGGAGGACATGCTAG
back to top

protein sequence of NO24G00300.1

>NO24G00300.1-protein ID=NO24G00300.1-protein|Name=NO24G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MKAIRKKYVGRRPSAVASPRPRVIRSASSSSASSSSSSSSSSSSSSTAIT
TTSTSSTLPPSIPSSSPSSSPPHPPHSLLTGIPSLSTRSWPPALTRTRKE
TSTTASFNGALTSSSASTSTTSPLPPPLYQPQTFALAVAVALIRLREKAA
LRRKRKLPSPLLPTRPSTLPPPPPVRGGGALLMSLPDELEGCLRTRELAS
ALENVCFLLPSKDGRMSEGGMEGEEAGRRNKEGGQEKGMEGYAYLKACLV
HAQTGERHGGEGERREGGGGGGRGGGGRRSAGRQEGGWEGSKPCSPLQAV
TLGLFSYFLLPSQKEAGREKGKEDLLQHPSPHLLLRAVALYHSLLQESLP
PSLSLSLPHSLPLDLHAIEAGLAHSLIRFGRHVLLLTPPSLPPSIPPSLL
EALPSLLDLYETIILSRVRLWTGEGGGEGGMEGVIERLVRVALALRPLRL
AEAYVWTSVGRVKAEVVRKGGREGGRTC*
back to top
Synonyms
Publications