NO24G00260, NO24G00260 (gene) Nannochloropsis oceanica

Overview
NameNO24G00260
Unique NameNO24G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4388
Alignment locationchr24:77817..82204 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:77817..82204 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G00260 vs. NCBI_GenBank
Match: CBN73774.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-12
Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = 0 
Query:  414 ALENEY-GSYCYLMGDLRGAKEAFIRALKWMPGHVNSLIKLGS-----GR-----ECREGGRR---GGGDALLHRGQLKLTQNDAAGALKDLQRAIAHEDHPP-PVAFACLGMALLK-------DDPTGTS-AEEALRSAYDKHPSSLEVLLYHGDVLALRGDLQGAMTRFAQAAAVDPSCPLPYVNAARAFLSVRD 588
            +L  EY GS+ YLMGD+  A E    A +    +  S +K GS     GR     EC +          D  LHRGQ  L  ND   A  DL+R++  E  P  P++ A  G+AL K         P+  S   + L  + +  P + EVL +  +VL   GD +  +     AA++DP CP+PYVNAARA+L + D
Sbjct:  639 SLALEYCGSFLYLMGDMNTALEHLRLAGEVDETNAKSWVKRGSVLSDLGRREEAFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSV--ELCPTMPISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFAEVLISMGDFKKGLEFLQTAASLDPECPVPYVNAARAYLGMND 833
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BLAST of NO24G00260 vs. NCBI_GenBank
Match: EPB85691.1 (hypothetical protein HMPREF1544_07517 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 65.1 bits (157), Expect = 9.500e-7
Identity = 53/183 (28.96%), Postives = 85/183 (46.45%), Query Frame = 0 
Query:  412 KAALENEYGSYCYLMGDLRGAKEAFIRALKWMPGHVNSLIKLGSGRECREGGRRGG--------------GDALLHRGQLKLTQNDAAGALKDLQRAIAHEDHPPPVAFACLGMALLKDDPTG-TSAEEALRSAYDKHPSSLEVLLYHGDVLALRGDLQGAMTRFAQAAAVDPSCPLPYVNAA 580
            +AA  N  G+  YL G    A +AF RAL+  P ++   IK  S     +G                    D   HRGQ+         A++D   +I  +   P   +A + +A++    T   +A +  +      P+ +EV  Y+G+VL  +G++QGA+  F +A A+DPS PLP++N A
Sbjct:  279 QAAALNLKGTLIYLEGQSDEALDAFNRALELDPNYIQVYIK-KSHVYMEQGDLTSALAQIRIAANLSPLDPDIYYHRGQIYYISGQYDLAMEDYSESIRLD---PTFVYAHIQLAVVHHKLTNHLTAVDMFQKISTHFPACVEVFNYYGEVLIDQGNIQGAIDMFNKAMALDPSHPLPFINKA 457
The following BLAST results are available for this feature:
BLAST of NO24G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
CBN73774.12.000e-1235.03conserved unknown protein [Ectocarpus siliculosus][more]
EPB85691.19.500e-728.96hypothetical protein HMPREF1544_07517 [Mucor circi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00260.1NO24G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128388gene_7248Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00260.1NO24G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00260 ID=NO24G00260|Name=NO24G00260|organism=Nannochloropsis oceanica|type=gene|length=4388bp
ATGCGAGCAAAAGGGTGTTTGGAGGAGGAGTGGGCGGAGGGAGTGTGTGG
CAGATCGTCACGAGGGAGGCGAAGGAGGAGGAGGAGGGGAGGAGGAAGAG
GGAGGGGAGGGAGGGAAGAGAACGACGgtaggtggagggtgggaggtaag
agggggacaggagagaaaggaaggaaatgagggagggaggggggaggatg
cttcaagtgaagggcttctggtgtcgtttcttttcttttcatcgtcctcc
ctccctccctccctctttctccttttccgtcattaaccccccctctcgct
tccttacgcagACTCGCCCTCCTCCTCGCCCACCTCCCTTCTCTCCTTCT
TCCTCTTCGCCTCGTCCTTTGAGCGTGCCCACCGGCTGGTTCTAGGGAAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGAGGCCGAGGAGTGTGC
GGCGGAGGGTGTGGAGGCCATAGAGAGAATTGTGGGCGCTGGGAAGGCTC
CAGgtgggagggagagaggaaggaaggggggaggaagggagggagggagg
gaggagggagggagggaggaggggagacctaatcttaaatacacatcgct
cgctcaccttccttcgttctcttttcccctctctctcacccttcctccct
ccttccctccctccgcagCCTCCCTTCTGGCTTGGGCCCATGTGACTCAC
GCGGAGCTGGCCGTGCACTGTCAGCGGATGGCCACGGCAGAGGAAGCTCT
GGAGGAGGCAGTGGCTgtaggtcccctcctccctccctccctccctccct
ccttatgtcctttcctcgctccctacctccctccctccctccttccttcc
tccttccttccatccctccctcccttcctccatccctccctccctccctc
cctcctccctccctccctccctccctccctcccgcccacccggcaatcca
gaaaatttcccgtttaaattcatttttaggaagtttcgaaccgtctggcc
actcatcctccctccctccctccttcaggtggatccctcatgctccgcag
catatttagcacgagcccagctccaaaagctcgctcatgatgagaggagg
aagaagaggaaaattagGGAAGCGAGGAGGAGGAAGGGGAGGAGGGGAGG
AGGAGGGAAGGGGAAGATGGAGTGGAAGGAGAGAAGGAGGAGGAGGAGGA
GGCGGCGGAGGAGGACAGGAATGAGGAGGAAAAAGAGGAAAAGGAGGAAA
AGGAGGAGGAGAAGGAGAAGGAGAGGGAGGAGGAAGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGCAGCAGCCAAGATTCTCTCAGACCTGTGCAAAGCTTATGCAC
TAGATGGCCTCAAGgtacttccctccctccctccctccctccctccctta
gcctgacatcccctccctccctccctccctccctccctctctccctccct
ccagGGAGCCCCTGAGCTGGAATTGTTGGAGTCGGCGCTCAAGGAGTCCT
TGAGGGCCCAGGCGGTGgtagggagggaggaagggaggcagggagggtca
ggtgaagggaaggagggagggaaggagggagggaaggagggagggagtct
ttgagaccccaggcggtggtagggagggaggaaggaagggagggagggaa
agaagaagggttcttacttgcctttgaacacaccgacagGCCACGCTCCA
TGCCCAGTTGGAGGAGGAGGGGGAGGAAGGGGAGGAAGAGAGGGAGGAGG
AAGAGGAGGAGGAGGAGGGGAGGGAGGGAGGAAGGGAGGGAGGAAACGGA
GGAGGCGAAGGAGGAGGATGCCTGCGACCTGGCTGGCTTCGAGTTACTTT
GCATCATTTTGTGAAGAAGAGGGGAGGAAGAGGAAGGGAAGAAGGAAGGG
AAGGAGGAAGGGAGGGAAGAGGGGAGGAGGAGATTGAAGATGAGCAGGGA
CGGAATgtaagtgtttggcctgatcgaccattttccctccctccctccct
ccctccctccctccctctttccctccctccctccctccctcctttcacct
tcatcgcccttgtccttaccggcgtcctttatcctcctcctaactccttt
ccttcttcccctctcgccctcacccctttctgcagCCCTCCCTCCTCCCC
TCCCTCGCCCTCACCCTCCGTCGTCTCCGGCATCTGCGACATGTGGGACG
TTACGCCGAGGCCTTCTCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCC
CCTCCCCTCCCTCTCTCCTCACTTCTCTCCGAGACCATCCCGACGAAGAA
GAGGATGAGGGCGGGAGGGAGGTCAAAGCCGCGCTTGAGAACGAATATGG
AAGCTATTGTTACTTAATGGGAGATTTAAGAGGGGCTAAGGAGGCCTTTA
TCAGGGCCTTGAAATGGATGCCGGgtaggtagggagggagggagggaggg
agggagggagggaggcagggaaccacggaatcgagggaaaaatgcttgtc
tgacgaacatcgttacctccccccctccctccctccctccccctctccct
ccctccctcccccctccttctccctcagGACATGTGAACAGCCTGATCAA
ACTAGgtgagctgatgagtgatatgggcctgcctgaggaggggctgcggc
tgctggatcagGCAGTGGAAGGGAGTGCAGGGAGGGGGGAAGGCGAGGAG
GAGgtagggagggagggaggcagagagaaagggaggacgggtggaaggca
ggaaggaaggcagggagggagtgaggaaagaatggaggagggagggtggg
aggcaggaagggagccgggagggaggggaagaagaagggagggagggagg
gagggagggagggaaggcgccttccaggcccaaaccgcatccgaagaaac
caagacaagtaatccccctccctccctccctccctccctcactcccttcc
tccctccctccctccctccccagGCGACGCCCTCCTCCACAGAGGACAGC
TTAAGCTTACTCAAAACGATGCGGCTGGAGCCCTTAAGGACCTCCAAAGG
GCTATAGCCCACGAAGACCATCCCgtacgtgcccctccctccctccctcc
ctccctccctccctcaatccctccctccctccctccctccctccctccct
ccctccctccctccctccctccatccctccctccctccccagCCCCCCGT
GGCCTTCGCCTGCCTAGGCATGGCTTTATTGAAGGATGACCCTACAGGTA
CCAGCGCCGAGGAGGCCTTGCGGTCGGCGTACGACAAACACCCTTCGAGC
TTGGAGgtgagcacctcccctccctccctcttctctctccgatcctcctc
aaccatagggatctttcggcgtgtcggatcacccctccactaaaccctcc
ctccctccctccctctcttcctccctctctcagGTTCTCCTCTACCACGG
GGACGTACTAGCCCTACGAGGAGATTTGCAGGGAGCCATGACGCGCTTCG
CACAGgtaggggaaggagggagggagggagggaaggaaggagggaaggac
atgaaaagatatccctcaggcgctttacactccactttttacctctccct
ccctccctcccttcctccttccttcctcccctccttccctccctccctcc
atagGCTGCTGCAGTTGATCCGAGCTGCCCCTTGCCCTACGTCAACGCCG
CCAGGGCCTTCCTCTCGgtggggagggaaggagggagggaaggaggggta
agagctatgaaggagggcataaacatttcatcctcatccctcccttcctc
cctccctccctccttccctcccttccctccagGTCCGTGACGTCATAAAG
GCCGAGGCCCACCTGCGGCAAGCTCAGGCTTTAGACCCTACATGTGGAGC
TACACTGCTCGACCTCGGGCAGCTGTACCTGCAGAAGGGAGAAGCAGCAG
CAGCTGAGAAGGCCTTGGCCCGGGCATTGCGCGAGgtaaggaggagggag
ggagggagggaggaggagggagggagggaaggagggaggttgaggttgcc
atagggagcagcaggagtaaagacaggacccaccgaatcgacccttggga
gacataagggcgggagggagggagggaggagggagggagggagaatgaga
aggagaggagtagtttgtggtgcgactgtcttagatatcatcccttccct
ccctccctccctccctccctccctccctccctccctccctctaagGCCCG
ATATCTTCCGGAGATATTGGACGCCTTGGTCTTCCAGCGCTTGGCAGTTT
TACAGGCCAACCACCACCCGCTGGATGTGAGGGAATGA
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protein sequence of NO24G00260.1

>NO24G00260.1-protein ID=NO24G00260.1-protein|Name=NO24G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MRAKGCLEEEWAEGVCGRSSRGRRRRRRRGGGRGRGGREENDDSPSSSPT
SLLSFFLFASSFERAHRLVLGKEGGREGGREGEEAEECAAEGVEAIERIV
GAGKAPASLLAWAHVTHAELAVHCQRMATAEEALEEAVAGSEEEEGEEGR
RREGEDGVEGEKEEEEEAAEEDRNEEEKEEKEEKEEEKEKEREEEEEEEE
EEEEEEEEEEEEEEEEEEEAAAKILSDLCKAYALDGLKGAPELELLESAL
KESLRAQAVATLHAQLEEEGEEGEEEREEEEEEEEGREGGREGGNGGGEG
GGCLRPGWLRVTLHHFVKKRGGRGREEGREGGREGRGEEEIEDEQGRNPS
LLPSLALTLRRLRHLRHVGRYAEAFSSFSSSSSSSSPSPPSLLTSLRDHP
DEEEDEGGREVKAALENEYGSYCYLMGDLRGAKEAFIRALKWMPGHVNSL
IKLGSGRECREGGRRGGGDALLHRGQLKLTQNDAAGALKDLQRAIAHEDH
PPPVAFACLGMALLKDDPTGTSAEEALRSAYDKHPSSLEVLLYHGDVLAL
RGDLQGAMTRFAQAAAVDPSCPLPYVNAARAFLSVRDVIKAEAHLRQAQA
LDPTCGATLLDLGQLYLQKGEAAAAEKALARALREARYLPEILDALVFQR
LAVLQANHHPLDVRE*
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Synonyms
Publications