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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:77817..82204 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00260.1 vs.
Match: XP_009835214.1 (hypothetical protein H257_10383 [Aphanomyces astaci]; ETV75166.1 hypothetical protein H257_10383 [Aphanomyces astaci]) HSP 1 Score: 128.6 bits (322), Expect = 7.000e-26 Identity = 85/253 (33.60%), Postives = 127/253 (50.20%), Query Frame = 0
Query: 417 NEYGSYCYLMGDLRGAKEAFIRALKWMPGHVNSLIKLGSGRECREGG--------------RRGGGDALLHRGQLKLTQNDAAGALKDLQRAIAHEDHPPPVAFACLGMALLKDDPTGTSAEEALRSAYDKHPSSLEVLLYHGDVLALRGDLQGAMTRFAQAAAVDPSCPLPYVNAARAFLSVRDVIKAEAHLRQAQALDPTCGATLLDLGQLYLQKGEAAAAEKALARALREARYLPEILDALVFQRLAVLQ 656
N + ++ Y+ GD+ A AL H+NS++K +G C G GD LHRGQ++L Q D A A+ L+R++ + V MAL K S + +SA ++ P+S EV L++GDVL+ R D AM +A + P+CPLP++NA R F++ D A AH QA +DP C A LDL Q+Y +G+ A + A R+LPE+ DA + +A++Q
Sbjct: 868 NFHATFLYIAGDVESALAVIDEALALDDTHLNSVVKK-AGFLCELGEFEAADECFTHAATVDENSGDVYLHRGQMELIQGDYAAAVSSLRRSMTRCESLA-VTHISYAMALYKAGSVYQSVD-VFKSALEQFPTSHEVHLFYGDVLSDRADYGLAMEHLKKAVELSPACPLPWLNAGRIFVATNDAGHAIAHFEQALQVDPRCSAAHLDLAQVYFAQGKVDRAMEHFDVATTTCRFLPEVEDACACRSVAMMQ 1117
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00260.1 ID=NO24G00260.1|Name=NO24G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp ATGCGAGCAAAAGGGTGTTTGGAGGAGGAGTGGGCGGAGGGAGTGTGTGG CAGATCGTCACGAGGGAGGCGAAGGAGGAGGAGGAGGGGAGGAGGAAGAG GGAGGGGAGGGAGGGAAGAGAACGACGACTCGCCCTCCTCCTCGCCCACC TCCCTTCTCTCCTTCTTCCTCTTCGCCTCGTCCTTTGAGCGTGCCCACCG GCTGGTTCTAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGG AGGCCGAGGAGTGTGCGGCGGAGGGTGTGGAGGCCATAGAGAGAATTGTG GGCGCTGGGAAGGCTCCAGCCTCCCTTCTGGCTTGGGCCCATGTGACTCA CGCGGAGCTGGCCGTGCACTGTCAGCGGATGGCCACGGCAGAGGAAGCTC TGGAGGAGGCAGTGGCTGGAAGCGAGGAGGAGGAAGGGGAGGAGGGGAGG AGGAGGGAAGGGGAAGATGGAGTGGAAGGAGAGAAGGAGGAGGAGGAGGA GGCGGCGGAGGAGGACAGGAATGAGGAGGAAAAAGAGGAAAAGGAGGAAA AGGAGGAGGAGAAGGAGAAGGAGAGGGAGGAGGAAGAGGAAGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAAGCAGCAGCCAAGATTCTCTCAGACCTGTGCAAAGCTTATGCAC TAGATGGCCTCAAGGGAGCCCCTGAGCTGGAATTGTTGGAGTCGGCGCTC AAGGAGTCCTTGAGGGCCCAGGCGGTGGCCACGCTCCATGCCCAGTTGGA GGAGGAGGGGGAGGAAGGGGAGGAAGAGAGGGAGGAGGAAGAGGAGGAGG AGGAGGGGAGGGAGGGAGGAAGGGAGGGAGGAAACGGAGGAGGCGAAGGA GGAGGATGCCTGCGACCTGGCTGGCTTCGAGTTACTTTGCATCATTTTGT GAAGAAGAGGGGAGGAAGAGGAAGGGAAGAAGGAAGGGAAGGAGGAAGGG AGGGAAGAGGGGAGGAGGAGATTGAAGATGAGCAGGGACGGAATCCCTCC CTCCTCCCCTCCCTCGCCCTCACCCTCCGTCGTCTCCGGCATCTGCGACA TGTGGGACGTTACGCCGAGGCCTTCTCTTCCTTCTCCTCCTCCTCCTCCT CCTCCTCCCCCTCCCCTCCCTCTCTCCTCACTTCTCTCCGAGACCATCCC GACGAAGAAGAGGATGAGGGCGGGAGGGAGGTCAAAGCCGCGCTTGAGAA CGAATATGGAAGCTATTGTTACTTAATGGGAGATTTAAGAGGGGCTAAGG AGGCCTTTATCAGGGCCTTGAAATGGATGCCGGGACATGTGAACAGCCTG ATCAAACTAGGCAGTGGAAGGGAGTGCAGGGAGGGGGGAAGGCGAGGAGG AGGCGACGCCCTCCTCCACAGAGGACAGCTTAAGCTTACTCAAAACGATG CGGCTGGAGCCCTTAAGGACCTCCAAAGGGCTATAGCCCACGAAGACCAT CCCCCCCCCGTGGCCTTCGCCTGCCTAGGCATGGCTTTATTGAAGGATGA CCCTACAGGTACCAGCGCCGAGGAGGCCTTGCGGTCGGCGTACGACAAAC ACCCTTCGAGCTTGGAGGTTCTCCTCTACCACGGGGACGTACTAGCCCTA CGAGGAGATTTGCAGGGAGCCATGACGCGCTTCGCACAGGCTGCTGCAGT TGATCCGAGCTGCCCCTTGCCCTACGTCAACGCCGCCAGGGCCTTCCTCT CGGTCCGTGACGTCATAAAGGCCGAGGCCCACCTGCGGCAAGCTCAGGCT TTAGACCCTACATGTGGAGCTACACTGCTCGACCTCGGGCAGCTGTACCT GCAGAAGGGAGAAGCAGCAGCAGCTGAGAAGGCCTTGGCCCGGGCATTGC GCGAGGCCCGATATCTTCCGGAGATATTGGACGCCTTGGTCTTCCAGCGC TTGGCAGTTTTACAGGCCAACCACCACCCGCTGGATGTGAGGGAATGA back to topprotein sequence of NO24G00260.1 >NO24G00260.1-protein ID=NO24G00260.1-protein|Name=NO24G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp MRAKGCLEEEWAEGVCGRSSRGRRRRRRRGGGRGRGGREENDDSPSSSPT SLLSFFLFASSFERAHRLVLGKEGGREGGREGEEAEECAAEGVEAIERIV GAGKAPASLLAWAHVTHAELAVHCQRMATAEEALEEAVAGSEEEEGEEGR RREGEDGVEGEKEEEEEAAEEDRNEEEKEEKEEKEEEKEKEREEEEEEEE EEEEEEEEEEEEEEEEEEEAAAKILSDLCKAYALDGLKGAPELELLESAL KESLRAQAVATLHAQLEEEGEEGEEEREEEEEEEEGREGGREGGNGGGEG GGCLRPGWLRVTLHHFVKKRGGRGREEGREGGREGRGEEEIEDEQGRNPS LLPSLALTLRRLRHLRHVGRYAEAFSSFSSSSSSSSPSPPSLLTSLRDHP DEEEDEGGREVKAALENEYGSYCYLMGDLRGAKEAFIRALKWMPGHVNSL IKLGSGRECREGGRRGGGDALLHRGQLKLTQNDAAGALKDLQRAIAHEDH PPPVAFACLGMALLKDDPTGTSAEEALRSAYDKHPSSLEVLLYHGDVLAL RGDLQGAMTRFAQAAAVDPSCPLPYVNAARAFLSVRDVIKAEAHLRQAQA LDPTCGATLLDLGQLYLQKGEAAAAEKALARALREARYLPEILDALVFQR LAVLQANHHPLDVRE* back to topmRNA from alignment at chr24:77817..82204+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00260.1 ID=NO24G00260.1|Name=NO24G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4388bp|location=Sequence derived from alignment at chr24:77817..82204+ (Nannochloropsis oceanica) ATGCGAGCAAAAGGGTGTTTGGAGGAGGAGTGGGCGGAGGGAGTGTGTGG
CAGATCGTCACGAGGGAGGCGAAGGAGGAGGAGGAGGGGAGGAGGAAGAG
GGAGGGGAGGGAGGGAAGAGAACGACGGTAGGTGGAGGGTGGGAGGTAAG
AGGGGGACAGGAGAGAAAGGAAGGAAATGAGGGAGGGAGGGGGGAGGATG
CTTCAAGTGAAGGGCTTCTGGTGTCGTTTCTTTTCTTTTCATCGTCCTCC
CTCCCTCCCTCCCTCTTTCTCCTTTTCCGTCATTAACCCCCCCTCTCGCT
TCCTTACGCAGACTCGCCCTCCTCCTCGCCCACCTCCCTTCTCTCCTTCT
TCCTCTTCGCCTCGTCCTTTGAGCGTGCCCACCGGCTGGTTCTAGGGAAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGAGGCCGAGGAGTGTGC
GGCGGAGGGTGTGGAGGCCATAGAGAGAATTGTGGGCGCTGGGAAGGCTC
CAGGTGGGAGGGAGAGAGGAAGGAAGGGGGGAGGAAGGGAGGGAGGGAGG
GAGGAGGGAGGGAGGGAGGAGGGGAGACCTAATCTTAAATACACATCGCT
CGCTCACCTTCCTTCGTTCTCTTTTCCCCTCTCTCTCACCCTTCCTCCCT
CCTTCCCTCCCTCCGCAGCCTCCCTTCTGGCTTGGGCCCATGTGACTCAC
GCGGAGCTGGCCGTGCACTGTCAGCGGATGGCCACGGCAGAGGAAGCTCT
GGAGGAGGCAGTGGCTGTAGGTCCCCTCCTCCCTCCCTCCCTCCCTCCCT
CCTTATGTCCTTTCCTCGCTCCCTACCTCCCTCCCTCCCTCCTTCCTTCC
TCCTTCCTTCCATCCCTCCCTCCCTTCCTCCATCCCTCCCTCCCTCCCTC
CCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCACCCGGCAATCCA
GAAAATTTCCCGTTTAAATTCATTTTTAGGAAGTTTCGAACCGTCTGGCC
ACTCATCCTCCCTCCCTCCCTCCTTCAGGTGGATCCCTCATGCTCCGCAG
CATATTTAGCACGAGCCCAGCTCCAAAAGCTCGCTCATGATGAGAGGAGG
AAGAAGAGGAAAATTAGGGAAGCGAGGAGGAGGAAGGGGAGGAGGGGAGG
AGGAGGGAAGGGGAAGATGGAGTGGAAGGAGAGAAGGAGGAGGAGGAGGA
GGCGGCGGAGGAGGACAGGAATGAGGAGGAAAAAGAGGAAAAGGAGGAAA
AGGAGGAGGAGAAGGAGAAGGAGAGGGAGGAGGAAGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGCAGCAGCCAAGATTCTCTCAGACCTGTGCAAAGCTTATGCAC
TAGATGGCCTCAAGGTACTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTA
GCCTGACATCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCT
CCAGGGAGCCCCTGAGCTGGAATTGTTGGAGTCGGCGCTCAAGGAGTCCT
TGAGGGCCCAGGCGGTGGTAGGGAGGGAGGAAGGGAGGCAGGGAGGGTCA
GGTGAAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGTCT
TTGAGACCCCAGGCGGTGGTAGGGAGGGAGGAAGGAAGGGAGGGAGGGAA
AGAAGAAGGGTTCTTACTTGCCTTTGAACACACCGACAGGCCACGCTCCA
TGCCCAGTTGGAGGAGGAGGGGGAGGAAGGGGAGGAAGAGAGGGAGGAGG
AAGAGGAGGAGGAGGAGGGGAGGGAGGGAGGAAGGGAGGGAGGAAACGGA
GGAGGCGAAGGAGGAGGATGCCTGCGACCTGGCTGGCTTCGAGTTACTTT
GCATCATTTTGTGAAGAAGAGGGGAGGAAGAGGAAGGGAAGAAGGAAGGG
AAGGAGGAAGGGAGGGAAGAGGGGAGGAGGAGATTGAAGATGAGCAGGGA
CGGAATGTAAGTGTTTGGCCTGATCGACCATTTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCCTTTCACCT
TCATCGCCCTTGTCCTTACCGGCGTCCTTTATCCTCCTCCTAACTCCTTT
CCTTCTTCCCCTCTCGCCCTCACCCCTTTCTGCAGCCCTCCCTCCTCCCC
TCCCTCGCCCTCACCCTCCGTCGTCTCCGGCATCTGCGACATGTGGGACG
TTACGCCGAGGCCTTCTCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCC
CCTCCCCTCCCTCTCTCCTCACTTCTCTCCGAGACCATCCCGACGAAGAA
GAGGATGAGGGCGGGAGGGAGGTCAAAGCCGCGCTTGAGAACGAATATGG
AAGCTATTGTTACTTAATGGGAGATTTAAGAGGGGCTAAGGAGGCCTTTA
TCAGGGCCTTGAAATGGATGCCGGGTAGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGCAGGGAACCACGGAATCGAGGGAAAAATGCTTGTC
TGACGAACATCGTTACCTCCCCCCCTCCCTCCCTCCCTCCCCCTCTCCCT
CCCTCCCTCCCCCCTCCTTCTCCCTCAGGACATGTGAACAGCCTGATCAA
ACTAGGTGAGCTGATGAGTGATATGGGCCTGCCTGAGGAGGGGCTGCGGC
TGCTGGATCAGGCAGTGGAAGGGAGTGCAGGGAGGGGGGAAGGCGAGGAG
GAGGTAGGGAGGGAGGGAGGCAGAGAGAAAGGGAGGACGGGTGGAAGGCA
GGAAGGAAGGCAGGGAGGGAGTGAGGAAAGAATGGAGGAGGGAGGGTGGG
AGGCAGGAAGGGAGCCGGGAGGGAGGGGAAGAAGAAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAAGGCGCCTTCCAGGCCCAAACCGCATCCGAAGAAAC
CAAGACAAGTAATCCCCCTCCCTCCCTCCCTCCCTCCCTCACTCCCTTCC
TCCCTCCCTCCCTCCCTCCCCAGGCGACGCCCTCCTCCACAGAGGACAGC
TTAAGCTTACTCAAAACGATGCGGCTGGAGCCCTTAAGGACCTCCAAAGG
GCTATAGCCCACGAAGACCATCCCGTACGTGCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCAATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCATCCCTCCCTCCCTCCCCAGCCCCCCGT
GGCCTTCGCCTGCCTAGGCATGGCTTTATTGAAGGATGACCCTACAGGTA
CCAGCGCCGAGGAGGCCTTGCGGTCGGCGTACGACAAACACCCTTCGAGC
TTGGAGGTGAGCACCTCCCCTCCCTCCCTCTTCTCTCTCCGATCCTCCTC
AACCATAGGGATCTTTCGGCGTGTCGGATCACCCCTCCACTAAACCCTCC
CTCCCTCCCTCCCTCTCTTCCTCCCTCTCTCAGGTTCTCCTCTACCACGG
GGACGTACTAGCCCTACGAGGAGATTTGCAGGGAGCCATGACGCGCTTCG
CACAGGTAGGGGAAGGAGGGAGGGAGGGAGGGAAGGAAGGAGGGAAGGAC
ATGAAAAGATATCCCTCAGGCGCTTTACACTCCACTTTTTACCTCTCCCT
CCCTCCCTCCCTTCCTCCTTCCTTCCTCCCCTCCTTCCCTCCCTCCCTCC
ATAGGCTGCTGCAGTTGATCCGAGCTGCCCCTTGCCCTACGTCAACGCCG
CCAGGGCCTTCCTCTCGGTGGGGAGGGAAGGAGGGAGGGAAGGAGGGGTA
AGAGCTATGAAGGAGGGCATAAACATTTCATCCTCATCCCTCCCTTCCTC
CCTCCCTCCCTCCTTCCCTCCCTTCCCTCCAGGTCCGTGACGTCATAAAG
GCCGAGGCCCACCTGCGGCAAGCTCAGGCTTTAGACCCTACATGTGGAGC
TACACTGCTCGACCTCGGGCAGCTGTACCTGCAGAAGGGAGAAGCAGCAG
CAGCTGAGAAGGCCTTGGCCCGGGCATTGCGCGAGGTAAGGAGGAGGGAG
GGAGGGAGGGAGGAGGAGGGAGGGAGGGAAGGAGGGAGGTTGAGGTTGCC
ATAGGGAGCAGCAGGAGTAAAGACAGGACCCACCGAATCGACCCTTGGGA
GACATAAGGGCGGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGAATGAGA
AGGAGAGGAGTAGTTTGTGGTGCGACTGTCTTAGATATCATCCCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTAAGGCCCG
ATATCTTCCGGAGATATTGGACGCCTTGGTCTTCCAGCGCTTGGCAGTTT
TACAGGCCAACCACCACCCGCTGGATGTGAGGGAATGA back to topCoding sequence (CDS) from alignment at chr24:77817..82204+ >NO24G00260.1 ID=NO24G00260.1|Name=NO24G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr24:77817..82204+ (Nannochloropsis oceanica) ATGCGAGCAAAAGGGTGTTTGGAGGAGGAGTGGGCGGAGGGAGTGTGTGG CAGATCGTCACGAGGGAGGCGAAGGAGGAGGAGGAGGGGAGGAGGAAGAG GGAGGGGAGGGAGGGAAGAGAACGACGACTCGCCCTCCTCCTCGCCCACC TCCCTTCTCTCCTTCTTCCTCTTCGCCTCGTCCTTTGAGCGTGCCCACCG GCTGGTTCTAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGG AGGCCGAGGAGTGTGCGGCGGAGGGTGTGGAGGCCATAGAGAGAATTGTG GGCGCTGGGAAGGCTCCAGCCTCCCTTCTGGCTTGGGCCCATGTGACTCA CGCGGAGCTGGCCGTGCACTGTCAGCGGATGGCCACGGCAGAGGAAGCTC TGGAGGAGGCAGTGGCTGGAAGCGAGGAGGAGGAAGGGGAGGAGGGGAGG AGGAGGGAAGGGGAAGATGGAGTGGAAGGAGAGAAGGAGGAGGAGGAGGA GGCGGCGGAGGAGGACAGGAATGAGGAGGAAAAAGAGGAAAAGGAGGAAA AGGAGGAGGAGAAGGAGAAGGAGAGGGAGGAGGAAGAGGAAGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAAGCAGCAGCCAAGATTCTCTCAGACCTGTGCAAAGCTTATGCAC TAGATGGCCTCAAGGGAGCCCCTGAGCTGGAATTGTTGGAGTCGGCGCTC AAGGAGTCCTTGAGGGCCCAGGCGGTGGCCACGCTCCATGCCCAGTTGGA GGAGGAGGGGGAGGAAGGGGAGGAAGAGAGGGAGGAGGAAGAGGAGGAGG AGGAGGGGAGGGAGGGAGGAAGGGAGGGAGGAAACGGAGGAGGCGAAGGA GGAGGATGCCTGCGACCTGGCTGGCTTCGAGTTACTTTGCATCATTTTGT GAAGAAGAGGGGAGGAAGAGGAAGGGAAGAAGGAAGGGAAGGAGGAAGGG AGGGAAGAGGGGAGGAGGAGATTGAAGATGAGCAGGGACGGAATCCCTCC CTCCTCCCCTCCCTCGCCCTCACCCTCCGTCGTCTCCGGCATCTGCGACA TGTGGGACGTTACGCCGAGGCCTTCTCTTCCTTCTCCTCCTCCTCCTCCT CCTCCTCCCCCTCCCCTCCCTCTCTCCTCACTTCTCTCCGAGACCATCCC GACGAAGAAGAGGATGAGGGCGGGAGGGAGGTCAAAGCCGCGCTTGAGAA CGAATATGGAAGCTATTGTTACTTAATGGGAGATTTAAGAGGGGCTAAGG AGGCCTTTATCAGGGCCTTGAAATGGATGCCGGGACATGTGAACAGCCTG ATCAAACTAGGCAGTGGAAGGGAGTGCAGGGAGGGGGGAAGGCGAGGAGG AGGCGACGCCCTCCTCCACAGAGGACAGCTTAAGCTTACTCAAAACGATG CGGCTGGAGCCCTTAAGGACCTCCAAAGGGCTATAGCCCACGAAGACCAT CCCCCCCCCGTGGCCTTCGCCTGCCTAGGCATGGCTTTATTGAAGGATGA CCCTACAGGTACCAGCGCCGAGGAGGCCTTGCGGTCGGCGTACGACAAAC ACCCTTCGAGCTTGGAGGTTCTCCTCTACCACGGGGACGTACTAGCCCTA CGAGGAGATTTGCAGGGAGCCATGACGCGCTTCGCACAGGCTGCTGCAGT TGATCCGAGCTGCCCCTTGCCCTACGTCAACGCCGCCAGGGCCTTCCTCT CGGTCCGTGACGTCATAAAGGCCGAGGCCCACCTGCGGCAAGCTCAGGCT TTAGACCCTACATGTGGAGCTACACTGCTCGACCTCGGGCAGCTGTACCT GCAGAAGGGAGAAGCAGCAGCAGCTGAGAAGGCCTTGGCCCGGGCATTGC GCGAGGCCCGATATCTTCCGGAGATATTGGACGCCTTGGTCTTCCAGCGC TTGGCAGTTTTACAGGCCAACCACCACCCGCTGGATGTGAGGGAATGA back to top
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