NO24G00150, NO24G00150 (gene) Nannochloropsis oceanica

Overview
NameNO24G00150
Unique NameNO24G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2560
Alignment locationchr24:46678..49237 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:46678..49237 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006461PLAC_motif_containing
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G00150 vs. NCBI_GenBank
Match: EWM20303.1 (Uncharacterized protein family Cys-rich, partial [Nannochloropsis gaditana])

HSP 1 Score: 127.1 bits (318), Expect = 5.600e-26
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 0 
Query:   24 ISDEGPLPAATEGYQPQEGQWKDHCFNCFSQINPSCLLAFFVPCCALAILSKRMGYASYQTVFWGLLVLFVVTCLFGVAFIYSLAVFTITFQILLIVRAKLGLP 128
            +SD     +    Y+P EGQWKDHCF CFSQ+NP+CL A FVPC ALA+LSKRMGYA Y+ + +GLL  FV+  L G+   YSLAVF ITFQ+LL+VRAK  LP
Sbjct:   32 VSDGTQTGSLPSEYRPMEGQWKDHCFACFSQMNPTCLTACFVPCLALAMLSKRMGYAPYKGILYGLLAAFVLGWLLGILVFYSLAVFVITFQLLLLVRAKFNLP 135
The following BLAST results are available for this feature:
BLAST of NO24G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20303.15.600e-2660.58Uncharacterized protein family Cys-rich, partial [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR123ngnoR123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00150.3NO24G00150.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00150.2NO24G00150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00150.1NO24G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00150.3NO24G00150.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00150.2NO24G00150.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00150.1NO24G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00150 ID=NO24G00150|Name=NO24G00150|organism=Nannochloropsis oceanica|type=gene|length=2560bp
TGGGTGCATGTAGCACAAACTGTTTCGAGTTGCGAAGGGTTAATAGGAGG
AAACAGGATTAAGGTGAGAGAGGTAGGGAGGTAGGAAGAATCCGGGGGAG
GAGGAGGTTATTGGAGACATTTCTTGAAGATGAGACATGCCAACAACCAA
GACCTTGTCAGCCGACCACATCGCGTCGCGCAGAAATATGCCAGGGCGTG
AGCACCCCTTCCGACTTGCCTGGGCATCTGTCGCTGTCGGTTTGTCTTCG
CTTTGCAACGTGCTCCTTGAAGAAGCTGCTGCTCTTGTTCCGAGAGGGTG
AGATCCGCCCGTGGCCTCCTCCCTCTATCCAATGGAGAGTCTACATCCTT
CCCTTCCTCGTTCCCTCCTCCGCACGCCCGCCCCCATGATTCCTCAACAG
CTCCAAGTAGCATAATTCATCATTCTTGTATTTCTGTCATTAATGCTGGA
CCAAACAGCGTCGCTGACGATGAATGCGATGCTCTCGGTCCTCCTTGAGG
AGCATAAAGCAAGCAAGCTACCAAGTTGTAGATGTGCAATGGCTGCGAGG
TCTCACCGTCCTCACTACACATCTCACAGGCCAAGGCCTTAAACTGCTTA
CAAAGCTCCTTTGCTCCTCCTCCTGTCCTTCTTCTCGACCCCACCAGGCC
GACAAGAGACAAGACAAAGAACACAACCAAAGAAACGATGCAACAGCAAC
AGGGCAAGAGTAGCAAAAGTATGGACATTGACGGCGCACCAGTCGCCCAG
ATCATGGAAGATGCGCCAGCCGTGTCATCAAAGGAAGAAGAAATGGACAT
CGACGCCTTGACCCAAGGTGGTGGATGTGGTGGTAGGGTAAAGACGGAAG
GAGGGAGGGGAAGAAGGGGAGGAGGGAGGGCTGCTTTTGATGATCACGGG
TTTTCACACTCACAAGCGTTCGCTTAATTTTTCCCTCCCTGTCTCCCTTC
GGCCACTTATTTCAGACGAAGGACCCCTCCCTGCCGCCACCGAAGGCTAC
CAGCCTCAGGAGGGCCAGTGGAAAGATCATTGCTTTAATTGCTTCTCACA
GATAAACCCTTCTTgtacgtacatcgggagggagagagagggtgaaggtg
ggatgacgggtgaacatttttacctgctagattatcaccgcaggaacacg
gccacatggaagaaagggagactggtacttaccctagctttcttccgcgc
cacacaattactatctatacatacatacatacagGCTTGCTCGCCTTCTT
TGTGCCGTGCTGCGCTTTGGCCATTCTCTCCAAGCGCATGGGgtaagtcc
ttcctcgcccttttcctcccaccctcccgccaaccctccctccctctctc
cctccatccactcctccatccctagTTACGCCTCCTATCAGACTGTGTTT
TGGGGGCTTTTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTT
CATCTACTCTCTCGCTGTCTTCACGATAACATTCCAAATACTTCTTATCG
TCCGGGCCAAGCTGGGTCTGCCGgtaggctcgcccaccctccctccctcc
ctccctccctccctccttccttccttcctttctctctttcttccttcctc
ttcttttttttttcccgtctttctattctctcgtgattctctttcaaggg
aaagagaatttctcacgagcttattctccctcacaaacacaccgtctctc
ccccccttccctccctccctccctcagGCTCTCTGTGGAAAGAAGAAGGA
CGGATGCGTGGCCATCATGGGCGACTGCATCGCTTCGTTCTTCTGCACAC
CCTGCGTCACCGCACGGATGATGCGGCACCTCTTCAATgtacgagccagc
cctccctccctcccccttccctccctccctcgttttcctgtcagccattt
tcttgacccacggcacgttagatttcaaatttgatttccccctccctttc
acgtctatctcacgatgtttctatgctcctatccgccgaggggaaggcgt
gattgcctgcggttgaatatgcgtttcatccgggccgtctgttgacgacc
gaatggccaccgccgcacccctttatgccaacgccgcaccacaatcagca
ccatctacgccaatacctcacagaactacctctcggaactctccctccct
ccctcccttcctccctcagTACAAGAAGAGGTGGGACAGCTGCATCGGCG
AGGAGGAGGTGGTGAGCTTCGTATGAGTTGACTGCTAAGTTCTTTGGTAC
GATTAAATATGTGGATTGAACCTCATAGGCATGATTTCATAATTAGATTG
GACCTCTCTCTGCCCTATCATTTCTCCTGCGCTCCCTTCCTCCCGCCCGC
CCTCCCGCCCTCCCTCAGCGTTGGCGAAGAAGAGATTGTGGCCTTGTTAT
GAAACCGTATGATCAGGGCAAATGGAAGGAAGATGGAGTTAGGGGCGGAG
AGAAGGAGGGAATGAGGGAAGGAGGGAGGGGAAGAAGGCAAAGGGAAATA
CAAAGAAGAAAAATACATTCAAAGGACGCTCCGATTGTCTTCTCTCATAT
AGAAGTGCTG
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protein sequence of NO24G00150.3

>NO24G00150.3-protein ID=NO24G00150.3-protein|Name=NO24G00150.3|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MITGFHTHKRSLNFSLPVSLRPLISDEGPLPAATEGYQPQEGQWKDHCFN
CFSQINPSCLLAFFVPCCALAILSKRMGYASYQTVFWGLLVLFVVTCLFG
VAFIYSLAVFTITFQILLIVRAKLGLPALCGKKKDGCVAIMGDCIASFFC
TPCVTARMMRHLFNYKKRWDSCIGEEEVVSFV*
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protein sequence of NO24G00150.2

>NO24G00150.2-protein ID=NO24G00150.2-protein|Name=NO24G00150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MCNGCEVSPSSLHISQAKALNCLQSSFAPPPVLLLDPTRPTRDKTKNTTK
ETMQQQQGKSSKSMDIDGAPVAQIMEDAPAVSSKEEEMDIDALTQGGGCG
DEGPLPAATEGYQPQEGQWKDHCFNCFSQINPSCLLAFFVPCCALAILSK
RMGYASYQTVFWGLLVLFVVTCLFGVAFIYSLAVFTITFQILLIVRAKLG
LPALCGKKKDGCVAIMGDCIASFFCTPCVTARMMRHLFNYKKRWDSCIGE
EEVVSFV*
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protein sequence of NO24G00150.1

>NO24G00150.1-protein ID=NO24G00150.1-protein|Name=NO24G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MCNGCEVSPSSLHISQAKALNCLQSSFAPPPVLLLDPTRPTRDKTKNTTK
ETMQQQQGKSSKSMDIDGAPVAQIMEDAPAVSSKEEEMDIDALTQDEGPL
PAATEGYQPQEGQWKDHCFNCFSQINPSCLLAFFVPCCALAILSKRMGYA
SYQTVFWGLLVLFVVTCLFGVAFIYSLAVFTITFQILLIVRAKLGLPALC
GKKKDGCVAIMGDCIASFFCTPCVTARMMRHLFNYKKRWDSCIGEEEVVS
FV*
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Synonyms
Publications