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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:46678..49237 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00150.3 vs.
Match: EWM20303.1 (Uncharacterized protein family Cys-rich, partial [Nannochloropsis gaditana]) HSP 1 Score: 126.7 bits (317), Expect = 7.300e-26 Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 28 GPLPAATEGYQPQEGQWKDHCFNCFSQINPSCLLAFFVPCCALAILSKRMGYASYQTVFWGLLVLFVVTCLFGVAFIYSLAVFTITFQILLIVRAKLGLP 128
G LP+ Y+P EGQWKDHCF CFSQ+NP+CL A FVPC ALA+LSKRMGYA Y+ + +GLL FV+ L G+ YSLAVF ITFQ+LL+VRAK LP
Sbjct: 39 GSLPSE---YRPMEGQWKDHCFACFSQMNPTCLTACFVPCLALAMLSKRMGYAPYKGILYGLLAAFVLGWLLGILVFYSLAVFVITFQLLLLVRAKFNLP 135
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00150.3 ID=NO24G00150.3|Name=NO24G00150.3|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
TGGGTGCATGTAGCACAAACTGTTTCGAGTTGCGAAGGGTTAATAGGAGG
AAACAGGATTAAGGTGAGAGAGGTAGGGAGGTAGGAAGAATCCGGGGGAG
GAGGAGGTTATTGGAGACATTTCTTGAAGATGAGACATGCCAACAACCAA
GACCTTGTCAGCCGACCACATCGCGTCGCGCAGAAATATGCCAGGGCGTG
AGCACCCCTTCCGACTTGCCTGGGCATCTGTCGCTGTCGGTTTGTCTTCG
CTTTGCAACGTGCTCCTTGAAGAAGCTGCTGCTCTTGTTCCGAGAGGGTG
AGATCCGCCCGTGGCCTCCTCCCTCTATCCAATGGAGAGTCTACATCCTT
CCCTTCCTCGTTCCCTCCTCCGCACGCCCGCCCCCATGATTCCTCAACAG
CTCCAAGTAGCATAATTCATCATTCTTGTATTTCTGTCATTAATGCTGGA
CCAAACAGCGTCGCTGACGATGAATGCGATGCTCTCGGTCCTCCTTGAGG
AGCATAAAGCAAGCAAGCTACCAAGTTGTAGATGTGCAATGGCTGCGAGG
TCTCACCGTCCTCACTACACATCTCACAGGCCAAGGCCTTAAACTGCTTA
CAAAGCTCCTTTGCTCCTCCTCCTGTCCTTCTTCTCGACCCCACCAGGCC
GACAAGAGACAAGACAAAGAACACAACCAAAGAAACGATGCAACAGCAAC
AGGGCAAGAGTAGCAAAAGTATGGACATTGACGGCGCACCAGTCGCCCAG
ATCATGGAAGATGCGCCAGCCGTGTCATCAAAGGAAGAAGAAATGGACAT
CGACGCCTTGACCCAAGGTGGTGGATGTGGTGGTAGGGTAAAGACGGAAG
GAGGGAGGGGAAGAAGGGGAGGAGGGAGGGCTGCTTTTGATGATCACGGG
TTTTCACACTCACAAGCGTTCGCTTAATTTTTCCCTCCCTGTCTCCCTTC
GGCCACTTATTTCAGACGAAGGACCCCTCCCTGCCGCCACCGAAGGCTAC
CAGCCTCAGGAGGGCCAGTGGAAAGATCATTGCTTTAATTGCTTCTCACA
GATAAACCCTTCTTGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTTGG
CCATTCTCTCCAAGCGCATGGGTTACGCCTCCTATCAGACTGTGTTTTGG
GGGCTTTTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTTCAT
CTACTCTCTCGCTGTCTTCACGATAACATTCCAAATACTTCTTATCGTCC
GGGCCAAGCTGGGTCTGCCGGCTCTCTGTGGAAAGAAGAAGGACGGATGC
GTGGCCATCATGGGCGACTGCATCGCTTCGTTCTTCTGCACACCCTGCGT
CACCGCACGGATGATGCGGCACCTCTTCAATTACAAGAAGAGGTGGGACA
GCTGCATCGGCGAGGAGGAGGTGGTGAGCTTCGTATGAGTTGACTGCTAA
GTTCTTTGGTACGATTAAATATGTGGATTGAACCTCATAGGCATGATTTC
ATAATTAGATTGGACCTCTCTCTGCCCTATCATTTCTCCTGCGCTCCCTT
CCTCCCGCCCGCCCTCCCGCCCTCCCTCAGCGTTGGCGAAGAAGAGATTG
TGGCCTTGTTATGAAACCGTATGATCAGGGCAAATGGAAGGAAGATGGAG
TTAGGGGCGGAGAGAAGGAGGGAATGAGGGAAGGAGGGAGGGGAAGAAGG
CAAAGGGAAATACAAAGAAGAAAAATACATTCAAAGGACGCTCCGATTGT
CTTCTCTCATATAGAAGTGCTG back to topprotein sequence of NO24G00150.3 >NO24G00150.3-protein ID=NO24G00150.3-protein|Name=NO24G00150.3|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MITGFHTHKRSLNFSLPVSLRPLISDEGPLPAATEGYQPQEGQWKDHCFN
CFSQINPSCLLAFFVPCCALAILSKRMGYASYQTVFWGLLVLFVVTCLFG
VAFIYSLAVFTITFQILLIVRAKLGLPALCGKKKDGCVAIMGDCIASFFC
TPCVTARMMRHLFNYKKRWDSCIGEEEVVSFV* back to topmRNA from alignment at chr24:46678..49237- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00150.3 ID=NO24G00150.3|Name=NO24G00150.3|organism=Nannochloropsis oceanica|type=mRNA|length=2560bp|location=Sequence derived from alignment at chr24:46678..49237- (Nannochloropsis oceanica)
TGGGTGCATGTAGCACAAACTGTTTCGAGTTGCGAAGGGTTAATAGGAGG
AAACAGGATTAAGGTGAGAGAGGTAGGGAGGTAGGAAGAATCCGGGGGAG
GAGGAGGTTATTGGAGACATTTCTTGAAGATGAGACATGCCAACAACCAA
GACCTTGTCAGCCGACCACATCGCGTCGCGCAGAAATATGCCAGGGCGTG
AGCACCCCTTCCGACTTGCCTGGGCATCTGTCGCTGTCGGTTTGTCTTCG
CTTTGCAACGTGCTCCTTGAAGAAGCTGCTGCTCTTGTTCCGAGAGGGTG
AGATCCGCCCGTGGCCTCCTCCCTCTATCCAATGGAGAGTCTACATCCTT
CCCTTCCTCGTTCCCTCCTCCGCACGCCCGCCCCCATGATTCCTCAACAG
CTCCAAGTAGCATAATTCATCATTCTTGTATTTCTGTCATTAATGCTGGA
CCAAACAGCGTCGCTGACGATGAATGCGATGCTCTCGGTCCTCCTTGAGG
AGCATAAAGCAAGCAAGCTACCAAGTTGTAGATGTGCAATGGCTGCGAGG
TCTCACCGTCCTCACTACACATCTCACAGGCCAAGGCCTTAAACTGCTTA
CAAAGCTCCTTTGCTCCTCCTCCTGTCCTTCTTCTCGACCCCACCAGGCC
GACAAGAGACAAGACAAAGAACACAACCAAAGAAACGATGCAACAGCAAC
AGGGCAAGAGTAGCAAAAGTATGGACATTGACGGCGCACCAGTCGCCCAG
ATCATGGAAGATGCGCCAGCCGTGTCATCAAAGGAAGAAGAAATGGACAT
CGACGCCTTGACCCAAGGTGGTGGATGTGGTGGTAGGGTAAAGACGGAAG
GAGGGAGGGGAAGAAGGGGAGGAGGGAGGGCTGCTTTTGATGATCACGGG
TTTTCACACTCACAAGCGTTCGCTTAATTTTTCCCTCCCTGTCTCCCTTC
GGCCACTTATTTCAGACGAAGGACCCCTCCCTGCCGCCACCGAAGGCTAC
CAGCCTCAGGAGGGCCAGTGGAAAGATCATTGCTTTAATTGCTTCTCACA
GATAAACCCTTCTTGTACGTACATCGGGAGGGAGAGAGAGGGTGAAGGTG
GGATGACGGGTGAACATTTTTACCTGCTAGATTATCACCGCAGGAACACG
GCCACATGGAAGAAAGGGAGACTGGTACTTACCCTAGCTTTCTTCCGCGC
CACACAATTACTATCTATACATACATACATACAGGCTTGCTCGCCTTCTT
TGTGCCGTGCTGCGCTTTGGCCATTCTCTCCAAGCGCATGGGGTAAGTCC
TTCCTCGCCCTTTTCCTCCCACCCTCCCGCCAACCCTCCCTCCCTCTCTC
CCTCCATCCACTCCTCCATCCCTAGTTACGCCTCCTATCAGACTGTGTTT
TGGGGGCTTTTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTT
CATCTACTCTCTCGCTGTCTTCACGATAACATTCCAAATACTTCTTATCG
TCCGGGCCAAGCTGGGTCTGCCGGTAGGCTCGCCCACCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTTCCTTCCTTCCTTTCTCTCTTTCTTCCTTCCTC
TTCTTTTTTTTTTCCCGTCTTTCTATTCTCTCGTGATTCTCTTTCAAGGG
AAAGAGAATTTCTCACGAGCTTATTCTCCCTCACAAACACACCGTCTCTC
CCCCCCTTCCCTCCCTCCCTCCCTCAGGCTCTCTGTGGAAAGAAGAAGGA
CGGATGCGTGGCCATCATGGGCGACTGCATCGCTTCGTTCTTCTGCACAC
CCTGCGTCACCGCACGGATGATGCGGCACCTCTTCAATGTACGAGCCAGC
CCTCCCTCCCTCCCCCTTCCCTCCCTCCCTCGTTTTCCTGTCAGCCATTT
TCTTGACCCACGGCACGTTAGATTTCAAATTTGATTTCCCCCTCCCTTTC
ACGTCTATCTCACGATGTTTCTATGCTCCTATCCGCCGAGGGGAAGGCGT
GATTGCCTGCGGTTGAATATGCGTTTCATCCGGGCCGTCTGTTGACGACC
GAATGGCCACCGCCGCACCCCTTTATGCCAACGCCGCACCACAATCAGCA
CCATCTACGCCAATACCTCACAGAACTACCTCTCGGAACTCTCCCTCCCT
CCCTCCCTTCCTCCCTCAGTACAAGAAGAGGTGGGACAGCTGCATCGGCG
AGGAGGAGGTGGTGAGCTTCGTATGAGTTGACTGCTAAGTTCTTTGGTAC
GATTAAATATGTGGATTGAACCTCATAGGCATGATTTCATAATTAGATTG
GACCTCTCTCTGCCCTATCATTTCTCCTGCGCTCCCTTCCTCCCGCCCGC
CCTCCCGCCCTCCCTCAGCGTTGGCGAAGAAGAGATTGTGGCCTTGTTAT
GAAACCGTATGATCAGGGCAAATGGAAGGAAGATGGAGTTAGGGGCGGAG
AGAAGGAGGGAATGAGGGAAGGAGGGAGGGGAAGAAGGCAAAGGGAAATA
CAAAGAAGAAAAATACATTCAAAGGACGCTCCGATTGTCTTCTCTCATAT
AGAAGTGCTG back to topCoding sequence (CDS) from alignment at chr24:46678..49237- >NO24G00150.3 ID=NO24G00150.3|Name=NO24G00150.3|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr24:46678..49237- (Nannochloropsis oceanica)
ATGATCACGGGTTTTCACACTCACAAGCGTTCGCTTAATTTTTCCCTCCC
TGTCTCCCTTCGGCCACTTATTTCAGACGAAGGACCCCTCCCTGCCGCCA
CCGAAGGCTACCAGCCTCAGGAGGGCCAGTGGAAAGATCATTGCTTTAAT
TGCTTCTCACAGATAAACCCTTCTTGCTTGCTCGCCTTCTTTGTGCCGTG
CTGCGCTTTGGCCATTCTCTCCAAGCGCATGGGTTACGCCTCCTATCAGA
CTGTGTTTTGGGGGCTTTTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGC
GTGGCTTTCATCTACTCTCTCGCTGTCTTCACGATAACATTCCAAATACT
TCTTATCGTCCGGGCCAAGCTGGGTCTGCCGGCTCTCTGTGGAAAGAAGA
AGGACGGATGCGTGGCCATCATGGGCGACTGCATCGCTTCGTTCTTCTGC
ACACCCTGCGTCACCGCACGGATGATGCGGCACCTCTTCAATTACAAGAA
GAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTTCGTATGA back to top
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