NO24G00110, NO24G00110 (gene) Nannochloropsis oceanica

Overview
NameNO24G00110
Unique NameNO24G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr24:38957..39403 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:38957..39403 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00110 vs. NCBI_GenBank
Match: XP_005852542.1 (hypothetical protein NGA_0706000, partial [Nannochloropsis gaditana CCMP526] >EKU23290.1 hypothetical protein NGA_0706000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.1 bits (196), Expect = 4.500e-12
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = 0 
Query:    1 MEILRRQMTGELPPSHPSFRNKTFALSTLPVEKILGEGAGGAEGEGGG--------RAANAEGRXXXXXXXXXXXXXXXXXXXXXXXXPASKQEKDKKTIARIKKLIKYKR 104
            ++++RRQMTGELP SHP+ RNK FALSTLP+EK+LG G  G EGE GG         AA+ E R                          +KQE+DKKTIARIKKLIKY+R
Sbjct:   54 LDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLG-GRNG-EGEVGGVREKESVLGAASGERR------------------GGEGKVERNKQERDKKTIARIKKLIKYRR 144
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BLAST of NO24G00110 vs. NCBI_GenBank
Match: EWM20442.1 (hypothetical protein Naga_101072g1 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 4.500e-12
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = 0 
Query:    1 MEILRRQMTGELPPSHPSFRNKTFALSTLPVEKILGEGAGGAEGEGGG--------RAANAEGRXXXXXXXXXXXXXXXXXXXXXXXXPASKQEKDKKTIARIKKLIKYKR 104
            ++++RRQMTGELP SHP+ RNK FALSTLP+EK+LG G  G EGE GG         AA+ E R                          +KQE+DKKTIARIKKLIKY+R
Sbjct:   81 LDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLG-GRNG-EGEVGGVREKESVLGAASGERR------------------GGEGKVERNKQERDKKTIARIKKLIKYRR 171
The following BLAST results are available for this feature:
BLAST of NO24G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852542.14.500e-1249.55hypothetical protein NGA_0706000, partial [Nannoch... [more]
EWM20442.14.500e-1249.55hypothetical protein Naga_101072g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00110.1NO24G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101072g1gene9967Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00110.1NO24G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00110 ID=NO24G00110|Name=NO24G00110|organism=Nannochloropsis oceanica|type=gene|length=447bp
ATGGAGATATTGCGACGACAAAgcaagtgattcttttccactgtctccct
ccctccctctctccccccctccctcccccgaacccctgcgcccacttatc
aatcaacctcctactcacccctccctccctccctccctctttccttgact
ccaacagTGACTGGTGAGCTGCCTCCTTCCCACCCCTCCTTTCGCAACAA
GACATTTGCCCTCAGCACGCTGCCAGTAGAGAAGATTCTGGGTGAGGGAG
CAGGAGGAGCAGAGGGAGAGGGGGGAGGAAGAGCAGCCAATGCGGAAGGA
AGAGGCGGCAGCTGTGGTGTTGATGGGGGAGGAGGGGGGAGGGTTGGTAG
GCGGGAGGGGGGGGGAGGGAGGGCGCCCGCGTCGAAACAGGAGAAGGACA
AGAAGACAATCGCGCGTATAAAGAAGCTCATCAAGTACAAACGTTGA
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protein sequence of NO24G00110.1

>NO24G00110.1-protein ID=NO24G00110.1-protein|Name=NO24G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MEILRRQMTGELPPSHPSFRNKTFALSTLPVEKILGEGAGGAEGEGGGRA
ANAEGRGGSCGVDGGGGGRVGRREGGGGRAPASKQEKDKKTIARIKKLIK
YKR*
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Synonyms
Publications