NO24G00110.1, NO24G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00110.1
Unique NameNO24G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length312
Alignment locationchr24:38957..39403 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:38957..39403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00110.1 vs.
Match: EWM20442.1 (hypothetical protein Naga_101072g1 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 4.800e-14
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:    1 MEILRRQMTGELPPSHPSFRNKTFALSTLPVEKILGEGAGGAEGEGGGRAANAEGRGGSCGVDGGGGGRVGRREGGGGRAPASKQEKDKKTIARIKKLIKYKR 104
            ++++RRQMTGELP SHP+ RNK FALSTLP+EK+LG   G  EGE GG        G + G           R GG G+   +KQE+DKKTIARIKKLIKY+R
Sbjct:   81 LDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNG--EGEVGGVREKESVLGAASG----------ERRGGEGKVERNKQERDKKTIARIKKLIKYRR 171
The following BLAST results are available for this feature:
BLAST of NO24G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20442.14.800e-1454.37hypothetical protein Naga_101072g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00110NO24G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00110.1NO24G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00110.1.cds1NO24G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00110.1.cds2NO24G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00110.1 ID=NO24G00110.1|Name=NO24G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=312bp
ATGGAGATATTGCGACGACAAATGACTGGTGAGCTGCCTCCTTCCCACCC
CTCCTTTCGCAACAAGACATTTGCCCTCAGCACGCTGCCAGTAGAGAAGA
TTCTGGGTGAGGGAGCAGGAGGAGCAGAGGGAGAGGGGGGAGGAAGAGCA
GCCAATGCGGAAGGAAGAGGCGGCAGCTGTGGTGTTGATGGGGGAGGAGG
GGGGAGGGTTGGTAGGCGGGAGGGGGGGGGAGGGAGGGCGCCCGCGTCGA
AACAGGAGAAGGACAAGAAGACAATCGCGCGTATAAAGAAGCTCATCAAG
TACAAACGTTGA
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protein sequence of NO24G00110.1

>NO24G00110.1-protein ID=NO24G00110.1-protein|Name=NO24G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MEILRRQMTGELPPSHPSFRNKTFALSTLPVEKILGEGAGGAEGEGGGRA
ANAEGRGGSCGVDGGGGGRVGRREGGGGRAPASKQEKDKKTIARIKKLIK
YKR*
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mRNA from alignment at chr24:38957..39403+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00110.1 ID=NO24G00110.1|Name=NO24G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=447bp|location=Sequence derived from alignment at chr24:38957..39403+ (Nannochloropsis oceanica)
ATGGAGATATTGCGACGACAAAGCAAGTGATTCTTTTCCACTGTCTCCCT
CCCTCCCTCTCTCCCCCCCTCCCTCCCCCGAACCCCTGCGCCCACTTATC
AATCAACCTCCTACTCACCCCTCCCTCCCTCCCTCCCTCTTTCCTTGACT
CCAACAGTGACTGGTGAGCTGCCTCCTTCCCACCCCTCCTTTCGCAACAA
GACATTTGCCCTCAGCACGCTGCCAGTAGAGAAGATTCTGGGTGAGGGAG
CAGGAGGAGCAGAGGGAGAGGGGGGAGGAAGAGCAGCCAATGCGGAAGGA
AGAGGCGGCAGCTGTGGTGTTGATGGGGGAGGAGGGGGGAGGGTTGGTAG
GCGGGAGGGGGGGGGAGGGAGGGCGCCCGCGTCGAAACAGGAGAAGGACA
AGAAGACAATCGCGCGTATAAAGAAGCTCATCAAGTACAAACGTTGA
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Coding sequence (CDS) from alignment at chr24:38957..39403+

>NO24G00110.1 ID=NO24G00110.1|Name=NO24G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at chr24:38957..39403+ (Nannochloropsis oceanica)
ATGGAGATATTGCGACGACAAATGACTGGTGAGCTGCCTCCTTCCCACCC
CTCCTTTCGCAACAAGACATTTGCCCTCAGCACGCTGCCAGTAGAGAAGA
TTCTGGGTGAGGGAGCAGGAGGAGCAGAGGGAGAGGGGGGAGGAAGAGCA
GCCAATGCGGAAGGAAGAGGCGGCAGCTGTGGTGTTGATGGGGGAGGAGG
GGGGAGGGTTGGTAGGCGGGAGGGGGGGGGAGGGAGGGCGCCCGCGTCGA
AACAGGAGAAGGACAAGAAGACAATCGCGCGTATAAAGAAGCTCATCAAG
TACAAACGTTGA
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Synonyms
Publications