NO24G00030, NO24G00030 (gene) Nannochloropsis oceanica

Overview
NameNO24G00030
Unique NameNO24G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2459
Alignment locationchr24:7459..9917 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:7459..9917 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO24G00030 vs. NCBI_GenBank
Match: EWM20444.1 (hypothetical protein Naga_101169g2 [Nannochloropsis gaditana])

HSP 1 Score: 102.1 bits (253), Expect = 4.000e-18
Identity = 107/323 (33.13%), Postives = 143/323 (44.27%), Query Frame = 0 
Query:   25 SRRLPSSVFRGGYSATTTHGGQ----ISLRLAA-ASFSSHIDKFSYQQKACRGSAEASRHQERQKETL---PSEAAVKQAADLVPNPAPASPGPLAP--PSRRRSSASPPQGLIPFTLLPLDLGTYHSLLSRSSTMPSEALVLLQEMQELGLTVDPPALLSAMRICGRHPAYLQQCLKLHDQVMSFPLLCASPSF---------------FSSSPLVQ----TSANNKTH---------------------------------FITTSYALVLSACLRAGGSQGYDAAHLFLEQMKEGKVAPTLLMYSELAKACLVVIEDKRE 286
            +R L +SV     S T T   +    + +RL   A+FS+   K   ++   RG+     HQ+R  + L    S  A + +     N  P+S   + P   S  +  +  PQ LI  TLLPLDL TY  LLS++ + PSEAL LL+EM + GLTVDP ALL  MR+C  HP Y    L LH Q+++FP   + PS                FS+  L+     TS                                        I  SY L L+AC+  GG QG   A   L +M+   VAP L+MY ELA+  L V E  RE
Sbjct:   25 ARSLRTSVLLSSKSTTVTDARRLQENVPIRLGGFAAFSTRNIKLLSRKIRRRGA--GLPHQQRYGKALRATQSSQAEESSEGSNTNDLPSSIESMQPVSASSPQIGSCLPQNLISSTLLPLDLSTYRQLLSQAPS-PSEALALLKEMHDGGLTVDPEALLCVMRLCAGHPDYFASTLHLHAQLLAFPSPSSLPSXXXXXXXXXXXPGVFPFSNFTLISKAFITSEEKPVDGPEKGQWENGCRGSRIPKVDADVTPVEGIATAAAIRESYGLALAACIYVGGRQGDGHARHLLWEMRAHGVAPNLVMYRELARTGLAVGEGGRE 344
The following BLAST results are available for this feature:
BLAST of NO24G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20444.14.000e-1833.13hypothetical protein Naga_101169g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR013ncniR013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00030.1NO24G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617007gene_12218Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101169g2gene9962Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00030.1NO24G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00030 ID=NO24G00030|Name=NO24G00030|organism=Nannochloropsis oceanica|type=gene|length=2459bp
CCTTTCAAATTTACATGAGTGTTTGCCCTTCTTTTCCTTTTGCCTCTCCT
CACAGAGGGCTCTGACCACCAACAGAAATCGCAATTGACCCTGAAATATC
CCCACAGCATGAAATTTAAATGATGTAAAGTGATCGATTATCTGTTTGCT
CCCTCATCTTGCCAAAGAGCGCCTAATTTCCTTTTTTTGATTTTCTCAAC
GGAAATAGAAAACCGTTGGTTAAGGACAAAAAATACAACCACAAATCAAC
AAGTTCGTAAATACATTCGGAACCCACATCACACAAGGTACAGTTACCGC
AAAATCTTAGCCATAATGCGTGCCGTGACTTCGTCGTCCCGTGGCCTGAA
CCGGCGCCTGTCTTCATCTTCGTCCAACTCGTCCTTCAGCCGCCGCCTCC
CCTCAAGCGTGTTCCGAGGCGGCTATAGTGCCACAACAACTCATGGCGGT
CAAATATCTCTTCGCTTAGCAGCCGCATCGTTTAGTTCTCATATAGATAA
ATTTTCTTATCAGCAAAAGGCCTGTCGAGGCAGTGCCGAGGCATCGCGCC
ATCAAGAGCGCCAGAAGGAGACACTACCCTCCGAAGCCGCAGTGAAGCAA
GCGGCAGATCTCGTCCCTAATCCTGCACCAGCCTCCCCAGGCCCCCTAGC
TCCTCCTTCCCGCAGGCGATCCTCTGCATCCCCTCCACAAGGCTTGATTC
CATTCACCCTCCTTCCCCTCGATCTCGGGACCTACCACAGTCTCCTCTCC
CGTTCTTCCACCATGCCGTCGGAAGCCCTTGTCCTCTTGCAAGAAATGCA
GGAGCTTGGCTTGACGGTGGACCCGCCAGCATTACTCAGTGCTATGCGCA
TCTGTGGTCGCCATCCAGCCTATTTGCAGCAGTGTTTGAAGCTGCATGAC
CAGGTCATGTCTTTTCCTTTGCTCTGTGCGTCTCCCTCATTCTTCTCTTC
TTCACCCCTCGTCCAAACCAGCGCCAATAACAAGACGCATTTCATCACAA
CAAGCTATGCCCTTGTCCTCTCTGCCTGTCTCCGCGCAGGGGGCTCGCAA
GGCTACGACGCTGCCCATCTCTTCCTAGAGCAAATGAAGGAAGGTAAGGT
AGCACCAACTCTACTCATGTATAGCGAGCTGGCCAAGGCATGCTTGGTGG
TGATAGAGGACAAGAGAGAGAGGGATGATGAAAGGGAAGAGGAAGCAAGG
AGGGCATTGAAGGTATTTCAAGAGGTGATGGCCATGATTCCTGCGGAAGA
GGAGGGGAAAAGTGGAGGAGGAAAGGCAGCAGAGACAAAAGGCCCAGACA
GTGCCCTTCTTTCTTCCTCTGTCCCTTCTACATATGGGGTTACATGTGGG
AAGCAGCTTAATGTGAAATGTAAAAGCGAGTCAGAGGCCCAATGGGTACA
TGAGCTTATAGCCTTGAAAGCAAGGGGGACGTGGGACAGGCCCTCGTTAT
CCTTGCACAGGGACTAACGGCCTTCTGTAGCAGTGAGACGGAGGGAGGGA
GGGAGGGAGAAAAGGAGGAGGAGGCTGTACCGTTCGCATGTAATGTGGTA
TTAAGCACGTGCATCAGAACCGAAAGGTGGAAAGAGGCAGGGCAGgtgag
tgaagaaggaagaagggaagggaaaagggatgctggtacagccgtttgtt
tcacgcattcaacctaacttgcctctcccaaacatccctcccctccgttc
ccacatctctctctcctcccctggttgccatcctcccccctcccctcttt
cccctgtccttactaccctcctgcagGTGAGAGACCTGATGCAGGGCCTT
GGGGTGCCTCCAGACGCCTTCACCCTCAACAGCCTCCTCGCCCACTCTCT
CCGCCAGCACCAGCACCAGCACCAGCAGGCGCCGTACCATCACAACCACC
ATCACCACAAAGGGCACCATCTTAATCAGCAGCAGCAGGAAATCTTCAGC
CCCTCCCTCCCCCCCCCCCCCCCCCCCCACCCGTGGTCCTGGTCAAGGAG
CTAGTCTCGGCCTTCCCCTCCCTCACGCCCAACCCCAACACCTTCCGGGC
GGTCCTAGACGTGTGCGGGATCGACAGCCTTCTGGACCTGTGTACATTCA
TGCAGGCAAGGGAGGGAAGGATGGAGGGAGGGGTGGGAATAGGGATGGGA
GTGGGGACCTACCGACTGTTGTTACAGGCTTTGGAGGAAAGGGAGGGAGG
GGAGGGAGTGAAGATTAAGGGGCTGCCCTTGCTGGCGAGGGTGGTTCAGA
AATTGTGATGAAGCAGGGAAGGAGGGAGGATGGAAGGGAGGGAGAAGCAG
ATTTTACGCTACTAGCATTTGTTTATACTGTCAACGCCAAAGGATGTAGC
TCCGATGAGGGAGAGTAGGACATGGAGGAAGAAATAGCAAGCGCCACAGG
GATGTATGTCACTTGGATGGCAGGAGGACAAGAAGAAATAAAATATATTG
ATAGGCAGA
back to top

protein sequence of NO24G00030.1

>NO24G00030.1-protein ID=NO24G00030.1-protein|Name=NO24G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MRAVTSSSRGLNRRLSSSSSNSSFSRRLPSSVFRGGYSATTTHGGQISLR
LAAASFSSHIDKFSYQQKACRGSAEASRHQERQKETLPSEAAVKQAADLV
PNPAPASPGPLAPPSRRRSSASPPQGLIPFTLLPLDLGTYHSLLSRSSTM
PSEALVLLQEMQELGLTVDPPALLSAMRICGRHPAYLQQCLKLHDQVMSF
PLLCASPSFFSSSPLVQTSANNKTHFITTSYALVLSACLRAGGSQGYDAA
HLFLEQMKEGKVAPTLLMYSELAKACLVVIEDKRERDDEREEEARRALKV
FQEVMAMIPAEEEGKSGGGKAAETKGPDSALLSSSVPSTYGVTCGKQLNV
KCKSESEAQWVHELIALKARGTWDRPSLSLHRD*
back to top
Synonyms
Publications