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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:7459..9917 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00030.1 vs.
Match: EWM20444.1 (hypothetical protein Naga_101169g2 [Nannochloropsis gaditana]) HSP 1 Score: 83.6 bits (205), Expect = 1.500e-12 Identity = 74/194 (38.14%), Postives = 100/194 (51.55%), Query Frame = 0
Query: 25 SRRLPSSVFRGGYSATTTHGGQIS----LRLAA-ASFSSHIDKFSYQQKACRGSAEASRHQERQKETL---PSEAAVKQAADLVPNPAPASPGPLAPPSRRRSSASP--PQGLIPFTLLPLDLGTYHSLLSRSSTMPSEALVLLQEMQELGLTVDPPALLSAMRICGRHPAYLQQCLKLHDQVMSFPLLCASPS 209
+R L +SV S T T ++ +RL A+FS+ K ++ RG+ HQ+R + L S A + + N P+S + P S PQ LI TLLPLDL TY LLS++ + PSEAL LL+EM + GLTVDP ALL MR+C HP Y L LH Q+++FP + PS
Sbjct: 25 ARSLRTSVLLSSKSTTVTDARRLQENVPIRLGGFAAFSTRNIKLLSRKIRRRGAGLP--HQQRYGKALRATQSSQAEESSEGSNTNDLPSSIESMQPVSASSPQIGSCLPQNLISSTLLPLDLSTYRQLLSQAPS-PSEALALLKEMHDGGLTVDPEALLCVMRLCAGHPDYFASTLHLHAQLLAFPSPSSLPS 215
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00030.1 ID=NO24G00030.1|Name=NO24G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp
CCTTTCAAATTTACATGAGTGTTTGCCCTTCTTTTCCTTTTGCCTCTCCT
CACAGAGGGCTCTGACCACCAACAGAAATCGCAATTGACCCTGAAATATC
CCCACAGCATGAAATTTAAATGATGTAAAGTGATCGATTATCTGTTTGCT
CCCTCATCTTGCCAAAGAGCGCCTAATTTCCTTTTTTTGATTTTCTCAAC
GGAAATAGAAAACCGTTGGTTAAGGACAAAAAATACAACCACAAATCAAC
AAGTTCGTAAATACATTCGGAACCCACATCACACAAGGTACAGTTACCGC
AAAATCTTAGCCATAATGCGTGCCGTGACTTCGTCGTCCCGTGGCCTGAA
CCGGCGCCTGTCTTCATCTTCGTCCAACTCGTCCTTCAGCCGCCGCCTCC
CCTCAAGCGTGTTCCGAGGCGGCTATAGTGCCACAACAACTCATGGCGGT
CAAATATCTCTTCGCTTAGCAGCCGCATCGTTTAGTTCTCATATAGATAA
ATTTTCTTATCAGCAAAAGGCCTGTCGAGGCAGTGCCGAGGCATCGCGCC
ATCAAGAGCGCCAGAAGGAGACACTACCCTCCGAAGCCGCAGTGAAGCAA
GCGGCAGATCTCGTCCCTAATCCTGCACCAGCCTCCCCAGGCCCCCTAGC
TCCTCCTTCCCGCAGGCGATCCTCTGCATCCCCTCCACAAGGCTTGATTC
CATTCACCCTCCTTCCCCTCGATCTCGGGACCTACCACAGTCTCCTCTCC
CGTTCTTCCACCATGCCGTCGGAAGCCCTTGTCCTCTTGCAAGAAATGCA
GGAGCTTGGCTTGACGGTGGACCCGCCAGCATTACTCAGTGCTATGCGCA
TCTGTGGTCGCCATCCAGCCTATTTGCAGCAGTGTTTGAAGCTGCATGAC
CAGGTCATGTCTTTTCCTTTGCTCTGTGCGTCTCCCTCATTCTTCTCTTC
TTCACCCCTCGTCCAAACCAGCGCCAATAACAAGACGCATTTCATCACAA
CAAGCTATGCCCTTGTCCTCTCTGCCTGTCTCCGCGCAGGGGGCTCGCAA
GGCTACGACGCTGCCCATCTCTTCCTAGAGCAAATGAAGGAAGGTAAGGT
AGCACCAACTCTACTCATGTATAGCGAGCTGGCCAAGGCATGCTTGGTGG
TGATAGAGGACAAGAGAGAGAGGGATGATGAAAGGGAAGAGGAAGCAAGG
AGGGCATTGAAGGTATTTCAAGAGGTGATGGCCATGATTCCTGCGGAAGA
GGAGGGGAAAAGTGGAGGAGGAAAGGCAGCAGAGACAAAAGGCCCAGACA
GTGCCCTTCTTTCTTCCTCTGTCCCTTCTACATATGGGGTTACATGTGGG
AAGCAGCTTAATGTGAAATGTAAAAGCGAGTCAGAGGCCCAATGGGTACA
TGAGCTTATAGCCTTGAAAGCAAGGGGGACGTGGGACAGGCCCTCGTTAT
CCTTGCACAGGGACTAACGGCCTTCTGTAGCAGTGAGACGGAGGGAGGGA
GGGAGGGAGAAAAGGAGGAGGAGGCTGTACCGTTCGCATGTAATGTGGTA
TTAAGCACGTGCATCAGAACCGAAAGGTGGAAAGAGGCAGGGCAGGTGAG
AGACCTGATGCAGGGCCTTGGGGTGCCTCCAGACGCCTTCACCCTCAACA
GCCTCCTCGCCCACTCTCTCCGCCAGCACCAGCACCAGCACCAGCAGGCG
CCGTACCATCACAACCACCATCACCACAAAGGGCACCATCTTAATCAGCA
GCAGCAGGAAATCTTCAGCCCCTCCCTCCCCCCCCCCCCCCCCCCCCACC
CGTGGTCCTGGTCAAGGAGCTAGTCTCGGCCTTCCCCTCCCTCACGCCCA
ACCCCAACACCTTCCGGGCGGTCCTAGACGTGTGCGGGATCGACAGCCTT
CTGGACCTGTGTACATTCATGCAGGCAAGGGAGGGAAGGATGGAGGGAGG
GGTGGGAATAGGGATGGGAGTGGGGACCTACCGACTGTTGTTACAGGCTT
TGGAGGAAAGGGAGGGAGGGGAGGGAGTGAAGATTAAGGGGCTGCCCTTG
CTGGCGAGGGTGGTTCAGAAATTGTGATGAAGCAGGGAAGGAGGGAGGAT
GGAAGGGAGGGAGAAGCAGATTTTACGCTACTAGCATTTGTTTATACTGT
CAACGCCAAAGGATGTAGCTCCGATGAGGGAGAGTAGGACATGGAGGAAG
AAATAGCAAGCGCCACAGGGATGTATGTCACTTGGATGGCAGGAGGACAA
GAAGAAATAAAATATATTGATAGGCAGA back to topprotein sequence of NO24G00030.1 >NO24G00030.1-protein ID=NO24G00030.1-protein|Name=NO24G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MRAVTSSSRGLNRRLSSSSSNSSFSRRLPSSVFRGGYSATTTHGGQISLR
LAAASFSSHIDKFSYQQKACRGSAEASRHQERQKETLPSEAAVKQAADLV
PNPAPASPGPLAPPSRRRSSASPPQGLIPFTLLPLDLGTYHSLLSRSSTM
PSEALVLLQEMQELGLTVDPPALLSAMRICGRHPAYLQQCLKLHDQVMSF
PLLCASPSFFSSSPLVQTSANNKTHFITTSYALVLSACLRAGGSQGYDAA
HLFLEQMKEGKVAPTLLMYSELAKACLVVIEDKRERDDEREEEARRALKV
FQEVMAMIPAEEEGKSGGGKAAETKGPDSALLSSSVPSTYGVTCGKQLNV
KCKSESEAQWVHELIALKARGTWDRPSLSLHRD* back to topmRNA from alignment at chr24:7459..9917- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00030.1 ID=NO24G00030.1|Name=NO24G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp|location=Sequence derived from alignment at chr24:7459..9917- (Nannochloropsis oceanica)
CCTTTCAAATTTACATGAGTGTTTGCCCTTCTTTTCCTTTTGCCTCTCCT
CACAGAGGGCTCTGACCACCAACAGAAATCGCAATTGACCCTGAAATATC
CCCACAGCATGAAATTTAAATGATGTAAAGTGATCGATTATCTGTTTGCT
CCCTCATCTTGCCAAAGAGCGCCTAATTTCCTTTTTTTGATTTTCTCAAC
GGAAATAGAAAACCGTTGGTTAAGGACAAAAAATACAACCACAAATCAAC
AAGTTCGTAAATACATTCGGAACCCACATCACACAAGGTACAGTTACCGC
AAAATCTTAGCCATAATGCGTGCCGTGACTTCGTCGTCCCGTGGCCTGAA
CCGGCGCCTGTCTTCATCTTCGTCCAACTCGTCCTTCAGCCGCCGCCTCC
CCTCAAGCGTGTTCCGAGGCGGCTATAGTGCCACAACAACTCATGGCGGT
CAAATATCTCTTCGCTTAGCAGCCGCATCGTTTAGTTCTCATATAGATAA
ATTTTCTTATCAGCAAAAGGCCTGTCGAGGCAGTGCCGAGGCATCGCGCC
ATCAAGAGCGCCAGAAGGAGACACTACCCTCCGAAGCCGCAGTGAAGCAA
GCGGCAGATCTCGTCCCTAATCCTGCACCAGCCTCCCCAGGCCCCCTAGC
TCCTCCTTCCCGCAGGCGATCCTCTGCATCCCCTCCACAAGGCTTGATTC
CATTCACCCTCCTTCCCCTCGATCTCGGGACCTACCACAGTCTCCTCTCC
CGTTCTTCCACCATGCCGTCGGAAGCCCTTGTCCTCTTGCAAGAAATGCA
GGAGCTTGGCTTGACGGTGGACCCGCCAGCATTACTCAGTGCTATGCGCA
TCTGTGGTCGCCATCCAGCCTATTTGCAGCAGTGTTTGAAGCTGCATGAC
CAGGTCATGTCTTTTCCTTTGCTCTGTGCGTCTCCCTCATTCTTCTCTTC
TTCACCCCTCGTCCAAACCAGCGCCAATAACAAGACGCATTTCATCACAA
CAAGCTATGCCCTTGTCCTCTCTGCCTGTCTCCGCGCAGGGGGCTCGCAA
GGCTACGACGCTGCCCATCTCTTCCTAGAGCAAATGAAGGAAGGTAAGGT
AGCACCAACTCTACTCATGTATAGCGAGCTGGCCAAGGCATGCTTGGTGG
TGATAGAGGACAAGAGAGAGAGGGATGATGAAAGGGAAGAGGAAGCAAGG
AGGGCATTGAAGGTATTTCAAGAGGTGATGGCCATGATTCCTGCGGAAGA
GGAGGGGAAAAGTGGAGGAGGAAAGGCAGCAGAGACAAAAGGCCCAGACA
GTGCCCTTCTTTCTTCCTCTGTCCCTTCTACATATGGGGTTACATGTGGG
AAGCAGCTTAATGTGAAATGTAAAAGCGAGTCAGAGGCCCAATGGGTACA
TGAGCTTATAGCCTTGAAAGCAAGGGGGACGTGGGACAGGCCCTCGTTAT
CCTTGCACAGGGACTAACGGCCTTCTGTAGCAGTGAGACGGAGGGAGGGA
GGGAGGGAGAAAAGGAGGAGGAGGCTGTACCGTTCGCATGTAATGTGGTA
TTAAGCACGTGCATCAGAACCGAAAGGTGGAAAGAGGCAGGGCAGGTGAG
TGAAGAAGGAAGAAGGGAAGGGAAAAGGGATGCTGGTACAGCCGTTTGTT
TCACGCATTCAACCTAACTTGCCTCTCCCAAACATCCCTCCCCTCCGTTC
CCACATCTCTCTCTCCTCCCCTGGTTGCCATCCTCCCCCCTCCCCTCTTT
CCCCTGTCCTTACTACCCTCCTGCAGGTGAGAGACCTGATGCAGGGCCTT
GGGGTGCCTCCAGACGCCTTCACCCTCAACAGCCTCCTCGCCCACTCTCT
CCGCCAGCACCAGCACCAGCACCAGCAGGCGCCGTACCATCACAACCACC
ATCACCACAAAGGGCACCATCTTAATCAGCAGCAGCAGGAAATCTTCAGC
CCCTCCCTCCCCCCCCCCCCCCCCCCCCACCCGTGGTCCTGGTCAAGGAG
CTAGTCTCGGCCTTCCCCTCCCTCACGCCCAACCCCAACACCTTCCGGGC
GGTCCTAGACGTGTGCGGGATCGACAGCCTTCTGGACCTGTGTACATTCA
TGCAGGCAAGGGAGGGAAGGATGGAGGGAGGGGTGGGAATAGGGATGGGA
GTGGGGACCTACCGACTGTTGTTACAGGCTTTGGAGGAAAGGGAGGGAGG
GGAGGGAGTGAAGATTAAGGGGCTGCCCTTGCTGGCGAGGGTGGTTCAGA
AATTGTGATGAAGCAGGGAAGGAGGGAGGATGGAAGGGAGGGAGAAGCAG
ATTTTACGCTACTAGCATTTGTTTATACTGTCAACGCCAAAGGATGTAGC
TCCGATGAGGGAGAGTAGGACATGGAGGAAGAAATAGCAAGCGCCACAGG
GATGTATGTCACTTGGATGGCAGGAGGACAAGAAGAAATAAAATATATTG
ATAGGCAGA back to topCoding sequence (CDS) from alignment at chr24:7459..9917- >NO24G00030.1 ID=NO24G00030.1|Name=NO24G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr24:7459..9917- (Nannochloropsis oceanica)
ATGCGTGCCGTGACTTCGTCGTCCCGTGGCCTGAACCGGCGCCTGTCTTC
ATCTTCGTCCAACTCGTCCTTCAGCCGCCGCCTCCCCTCAAGCGTGTTCC
GAGGCGGCTATAGTGCCACAACAACTCATGGCGGTCAAATATCTCTTCGC
TTAGCAGCCGCATCGTTTAGTTCTCATATAGATAAATTTTCTTATCAGCA
AAAGGCCTGTCGAGGCAGTGCCGAGGCATCGCGCCATCAAGAGCGCCAGA
AGGAGACACTACCCTCCGAAGCCGCAGTGAAGCAAGCGGCAGATCTCGTC
CCTAATCCTGCACCAGCCTCCCCAGGCCCCCTAGCTCCTCCTTCCCGCAG
GCGATCCTCTGCATCCCCTCCACAAGGCTTGATTCCATTCACCCTCCTTC
CCCTCGATCTCGGGACCTACCACAGTCTCCTCTCCCGTTCTTCCACCATG
CCGTCGGAAGCCCTTGTCCTCTTGCAAGAAATGCAGGAGCTTGGCTTGAC
GGTGGACCCGCCAGCATTACTCAGTGCTATGCGCATCTGTGGTCGCCATC
CAGCCTATTTGCAGCAGTGTTTGAAGCTGCATGACCAGGTCATGTCTTTT
CCTTTGCTCTGTGCGTCTCCCTCATTCTTCTCTTCTTCACCCCTCGTCCA
AACCAGCGCCAATAACAAGACGCATTTCATCACAACAAGCTATGCCCTTG
TCCTCTCTGCCTGTCTCCGCGCAGGGGGCTCGCAAGGCTACGACGCTGCC
CATCTCTTCCTAGAGCAAATGAAGGAAGGTAAGGTAGCACCAACTCTACT
CATGTATAGCGAGCTGGCCAAGGCATGCTTGGTGGTGATAGAGGACAAGA
GAGAGAGGGATGATGAAAGGGAAGAGGAAGCAAGGAGGGCATTGAAGGTA
TTTCAAGAGGTGATGGCCATGATTCCTGCGGAAGAGGAGGGGAAAAGTGG
AGGAGGAAAGGCAGCAGAGACAAAAGGCCCAGACAGTGCCCTTCTTTCTT
CCTCTGTCCCTTCTACATATGGGGTTACATGTGGGAAGCAGCTTAATGTG
AAATGTAAAAGCGAGTCAGAGGCCCAATGGGTACATGAGCTTATAGCCTT
GAAAGCAAGGGGGACGTGGGACAGGCCCTCGTTATCCTTGCACAGGGACT
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