NO23G01890, NO23G01890 (gene) Nannochloropsis oceanica

Overview
NameNO23G01890
Unique NameNO23G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2345
Alignment locationchr23:681951..684295 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:681951..684295 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01890.1NO23G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674364gene_10003Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01890.1NO23G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01890 ID=NO23G01890|Name=NO23G01890|organism=Nannochloropsis oceanica|type=gene|length=2345bp
ACTTTCTATTGATCTTTTATTTCTTTTTTAAGCTTTTTGATTTATTTCCT
TTGGGGATGTGGGAATATTTGGTCGATCTGATTTTGACTGGTCTTTCTGT
GACAGCATGTCTTCATCTCCGTAAGAGGGTGGCTCCCGCACCATGTCTTC
CCTCGCACGTGCATACCCCTCTTCATCTCTGAAGCTGAGACAAGGGATGA
TGCCTCTGCCAGGACCTTCATATGAAGGTTGTTAAGAAAACGATTTCATG
AAGAAAACGTGCTTCTAACGGGCCCTTACCATGACGAACGGTACACGCAT
CGACAATCCACATGATGTACGGGGGTCAGAATTTAGGCTTACTCAGCCCC
CTTTGGGCGCACCTGGTCGCAGCTCCATGAGCTTTAAATGGTTATTTTAT
TTGTAGCATTAAGATGTGCATGTACAGGAGGACAAGCCCTTCCTAAGTGC
TTGTGCCCAGAGCTTTGACCGAGCAAAGGTTCGATGCCCCTCTTCTTTCA
TGTCCCCACTTTTCCTCGAGTCCTTAAACATGTGACAGAAGACGCGTCTC
ACCAAATGGTTGAATTATGAACGGTTCTTTATCTTTCTAATTCCATATGT
TTGATGAGTGCGAGGCCTAATAGCGTGACAATAACTCCCATGGCATGCTG
ACTCTGTCTCTGCGGGGAATCGCCTTGAATGATGATCTCTGTCGGTGACG
CAGAGTGGAGGCGACGTCAGACGCGCAACAGCAGGAGCTCGCTCTAGAAG
AGGAGGTTCACTTAACACCGTTTGTCTGACTTCCTGTCTCGCATGTGGCC
CTTCGGTTCTTTGTATTATGTTTGTTATATTCTCGTGTAGCAATGAACTT
TTCAAGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGT
GTGCTGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGG
CCCTTGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAA
ATCATATGAAAAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATAC
CGCTTCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCC
TACGCGAGGACTCACCCAGCAACACCAGCAAACAACATACGACAAGCCAT
GCGCTACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGC
CTTTCGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAGgt
gagtgtgccgcaattcttaccctgaccctctatttgttgtaccctcgctt
tgagcgccttagcttcacgcccttgccgaccagcatatctctctccctcc
tttctttctatttctctctctcgcttcatatgtccctttccttcattcga
cggatctacagacacaaactccaaaacacttatcaccttaccccatccca
ccacacagAGAAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCC
GCCGCTTGCGCAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCC
TTTGGGGAAGACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGT
CGAGAAAGGTGATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCG
AAGACGAAAAAAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCC
GCTGCGGCTTTGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTG
GAGCTTTGAAGGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGA
AGAATGTGAGAATGAGAGAAGAAGAGGCCAGGTGAGCTTGACGAGAGATA
CTCCATTTATGTGAAGGAGTAATAGTGAACGCGCAGTACATACAGAGCAC
AGAGTGGATAGCAATGAGAGTGCCGGATTGAAACCCAAAGTTAGCCGCCT
TCATATCGCAATGCCTTTGTTTCACAGTTCTCGGAACATGGGTTAGAGAG
ACCGCAGTGGGAACGGCGAGCAAAGCTAGCGTAGCACGTTAGCCAATAGC
CCCTGGAAGTTCTTCAAAAACCACACATTCCGAAAAGCGTCAGCTGTGCC
CTGTAAATATTTTGATTACGAGGTGCGATGAGGTTCGAACACCATAACAG
GTCCATGGATGTTCCCAGGCGCAAAAAGGAAATATAATTCACCCGTAAAA
AGGGAAGGGAAAACAATTACCGAGAGATTTGTTGGACAAAAGTGAAGAGG
AAAACAAACAAACCATGCGAGCTTTTGTTTTAAAGAACAAGTGTGGAGTT
GAGAGGGAAGGGCAAGTGGTATGGAGGGAGATGTCCTTATCAGTG
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protein sequence of NO23G01890.1

>NO23G01890.1-protein ID=NO23G01890.1-protein|Name=NO23G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MNFSSSFWPPQLGLSPAKPCAASRARHCIAAPNSSRPLVRPRLAFPCLHV
EGKSYEKKHLHNPRSSFCIPLPHPLTATTQSKSRHPYARTHPATPANNIR
QAMRYYITIFALAPAVSLLPFEHVQAHYLRIDSNKEKSLQYDSTHDEYGR
RLRSRQLSTPIGHGWAFGEDSKEQAPRAAAAAVEKGDKATPMGHGWAIGE
DEKKEIVTAHVIAAAAAAALDGDKVHTPMGHGWSFEGPAKGMDVAFP*
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Synonyms
Publications