NO23G01890.1, NO23G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01890.1
Unique NameNO23G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2135
Alignment locationchr23:681951..684295 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:681951..684295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01890NO23G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01890.1NO23G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01890.1.cds1NO23G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01890.1.cds2NO23G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01890.1 ID=NO23G01890.1|Name=NO23G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp
ACTTTCTATTGATCTTTTATTTCTTTTTTAAGCTTTTTGATTTATTTCCT
TTGGGGATGTGGGAATATTTGGTCGATCTGATTTTGACTGGTCTTTCTGT
GACAGCATGTCTTCATCTCCGTAAGAGGGTGGCTCCCGCACCATGTCTTC
CCTCGCACGTGCATACCCCTCTTCATCTCTGAAGCTGAGACAAGGGATGA
TGCCTCTGCCAGGACCTTCATATGAAGGTTGTTAAGAAAACGATTTCATG
AAGAAAACGTGCTTCTAACGGGCCCTTACCATGACGAACGGTACACGCAT
CGACAATCCACATGATGTACGGGGGTCAGAATTTAGGCTTACTCAGCCCC
CTTTGGGCGCACCTGGTCGCAGCTCCATGAGCTTTAAATGGTTATTTTAT
TTGTAGCATTAAGATGTGCATGTACAGGAGGACAAGCCCTTCCTAAGTGC
TTGTGCCCAGAGCTTTGACCGAGCAAAGGTTCGATGCCCCTCTTCTTTCA
TGTCCCCACTTTTCCTCGAGTCCTTAAACATGTGACAGAAGACGCGTCTC
ACCAAATGGTTGAATTATGAACGGTTCTTTATCTTTCTAATTCCATATGT
TTGATGAGTGCGAGGCCTAATAGCGTGACAATAACTCCCATGGCATGCTG
ACTCTGTCTCTGCGGGGAATCGCCTTGAATGATGATCTCTGTCGGTGACG
CAGAGTGGAGGCGACGTCAGACGCGCAACAGCAGGAGCTCGCTCTAGAAG
AGGAGGTTCACTTAACACCGTTTGTCTGACTTCCTGTCTCGCATGTGGCC
CTTCGGTTCTTTGTATTATGTTTGTTATATTCTCGTGTAGCAATGAACTT
TTCAAGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGT
GTGCTGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGG
CCCTTGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAA
ATCATATGAAAAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATAC
CGCTTCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCC
TACGCGAGGACTCACCCAGCAACACCAGCAAACAACATACGACAAGCCAT
GCGCTACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGC
CTTTCGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAGAG
AAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCCGCCGCTTGCG
CAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCCTTTGGGGAAG
ACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGTCGAGAAAGGT
GATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCGAAGACGAAAA
AAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCCGCTGCGGCTT
TGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTGGAGCTTTGAA
GGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGAAGAATGTGAG
AATGAGAGAAGAAGAGGCCAGGTGAGCTTGACGAGAGATACTCCATTTAT
GTGAAGGAGTAATAGTGAACGCGCAGTACATACAGAGCACAGAGTGGATA
GCAATGAGAGTGCCGGATTGAAACCCAAAGTTAGCCGCCTTCATATCGCA
ATGCCTTTGTTTCACAGTTCTCGGAACATGGGTTAGAGAGACCGCAGTGG
GAACGGCGAGCAAAGCTAGCGTAGCACGTTAGCCAATAGCCCCTGGAAGT
TCTTCAAAAACCACACATTCCGAAAAGCGTCAGCTGTGCCCTGTAAATAT
TTTGATTACGAGGTGCGATGAGGTTCGAACACCATAACAGGTCCATGGAT
GTTCCCAGGCGCAAAAAGGAAATATAATTCACCCGTAAAAAGGGAAGGGA
AAACAATTACCGAGAGATTTGTTGGACAAAAGTGAAGAGGAAAACAAACA
AACCATGCGAGCTTTTGTTTTAAAGAACAAGTGTGGAGTTGAGAGGGAAG
GGCAAGTGGTATGGAGGGAGATGTCCTTATCAGTG
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protein sequence of NO23G01890.1

>NO23G01890.1-protein ID=NO23G01890.1-protein|Name=NO23G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MNFSSSFWPPQLGLSPAKPCAASRARHCIAAPNSSRPLVRPRLAFPCLHV
EGKSYEKKHLHNPRSSFCIPLPHPLTATTQSKSRHPYARTHPATPANNIR
QAMRYYITIFALAPAVSLLPFEHVQAHYLRIDSNKEKSLQYDSTHDEYGR
RLRSRQLSTPIGHGWAFGEDSKEQAPRAAAAAVEKGDKATPMGHGWAIGE
DEKKEIVTAHVIAAAAAAALDGDKVHTPMGHGWSFEGPAKGMDVAFP*
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mRNA from alignment at chr23:681951..684295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01890.1 ID=NO23G01890.1|Name=NO23G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2345bp|location=Sequence derived from alignment at chr23:681951..684295+ (Nannochloropsis oceanica)
ACTTTCTATTGATCTTTTATTTCTTTTTTAAGCTTTTTGATTTATTTCCT
TTGGGGATGTGGGAATATTTGGTCGATCTGATTTTGACTGGTCTTTCTGT
GACAGCATGTCTTCATCTCCGTAAGAGGGTGGCTCCCGCACCATGTCTTC
CCTCGCACGTGCATACCCCTCTTCATCTCTGAAGCTGAGACAAGGGATGA
TGCCTCTGCCAGGACCTTCATATGAAGGTTGTTAAGAAAACGATTTCATG
AAGAAAACGTGCTTCTAACGGGCCCTTACCATGACGAACGGTACACGCAT
CGACAATCCACATGATGTACGGGGGTCAGAATTTAGGCTTACTCAGCCCC
CTTTGGGCGCACCTGGTCGCAGCTCCATGAGCTTTAAATGGTTATTTTAT
TTGTAGCATTAAGATGTGCATGTACAGGAGGACAAGCCCTTCCTAAGTGC
TTGTGCCCAGAGCTTTGACCGAGCAAAGGTTCGATGCCCCTCTTCTTTCA
TGTCCCCACTTTTCCTCGAGTCCTTAAACATGTGACAGAAGACGCGTCTC
ACCAAATGGTTGAATTATGAACGGTTCTTTATCTTTCTAATTCCATATGT
TTGATGAGTGCGAGGCCTAATAGCGTGACAATAACTCCCATGGCATGCTG
ACTCTGTCTCTGCGGGGAATCGCCTTGAATGATGATCTCTGTCGGTGACG
CAGAGTGGAGGCGACGTCAGACGCGCAACAGCAGGAGCTCGCTCTAGAAG
AGGAGGTTCACTTAACACCGTTTGTCTGACTTCCTGTCTCGCATGTGGCC
CTTCGGTTCTTTGTATTATGTTTGTTATATTCTCGTGTAGCAATGAACTT
TTCAAGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGCCAAGCCGT
GTGCTGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACTCCAGTAGG
CCCTTGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTCGAAGGGAA
ATCATATGAAAAGAAACACCTGCACAACCCACGCTCATCTTTCTGCATAC
CGCTTCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGCGTCACCCC
TACGCGAGGACTCACCCAGCAACACCAGCAAACAACATACGACAAGCCAT
GCGCTACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTCCTTGCTGC
CTTTCGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCAACAAAGGT
GAGTGTGCCGCAATTCTTACCCTGACCCTCTATTTGTTGTACCCTCGCTT
TGAGCGCCTTAGCTTCACGCCCTTGCCGACCAGCATATCTCTCTCCCTCC
TTTCTTTCTATTTCTCTCTCTCGCTTCATATGTCCCTTTCCTTCATTCGA
CGGATCTACAGACACAAACTCCAAAACACTTATCACCTTACCCCATCCCA
CCACACAGAGAAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCC
GCCGCTTGCGCAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCC
TTTGGGGAAGACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGT
CGAGAAAGGTGATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCG
AAGACGAAAAAAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCC
GCTGCGGCTTTGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTG
GAGCTTTGAAGGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAGATGA
AGAATGTGAGAATGAGAGAAGAAGAGGCCAGGTGAGCTTGACGAGAGATA
CTCCATTTATGTGAAGGAGTAATAGTGAACGCGCAGTACATACAGAGCAC
AGAGTGGATAGCAATGAGAGTGCCGGATTGAAACCCAAAGTTAGCCGCCT
TCATATCGCAATGCCTTTGTTTCACAGTTCTCGGAACATGGGTTAGAGAG
ACCGCAGTGGGAACGGCGAGCAAAGCTAGCGTAGCACGTTAGCCAATAGC
CCCTGGAAGTTCTTCAAAAACCACACATTCCGAAAAGCGTCAGCTGTGCC
CTGTAAATATTTTGATTACGAGGTGCGATGAGGTTCGAACACCATAACAG
GTCCATGGATGTTCCCAGGCGCAAAAAGGAAATATAATTCACCCGTAAAA
AGGGAAGGGAAAACAATTACCGAGAGATTTGTTGGACAAAAGTGAAGAGG
AAAACAAACAAACCATGCGAGCTTTTGTTTTAAAGAACAAGTGTGGAGTT
GAGAGGGAAGGGCAAGTGGTATGGAGGGAGATGTCCTTATCAGTG
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Coding sequence (CDS) from alignment at chr23:681951..684295+

>NO23G01890.1 ID=NO23G01890.1|Name=NO23G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr23:681951..684295+ (Nannochloropsis oceanica)
ATGAACTTTTCAAGCTCATTTTGGCCTCCCCAACTTGGACTCAGCCCAGC
CAAGCCGTGTGCTGCGTCGCGGGCTAGACATTGCATTGCGGCCCCCAACT
CCAGTAGGCCCTTGGTACGCCCGCGATTAGCTTTCCCCTGCTTGCATGTC
GAAGGGAAATCATATGAAAAGAAACACCTGCACAACCCACGCTCATCTTT
CTGCATACCGCTTCCACACCCTTTGACAGCCACCACTCAGAGTAAATCGC
GTCACCCCTACGCGAGGACTCACCCAGCAACACCAGCAAACAACATACGA
CAAGCCATGCGCTACTATATCACCATCTTTGCACTAGCCCCTGCGGTTTC
CTTGCTGCCTTTCGAGCATGTTCAGGCTCACTACCTGCGTATCGACAGCA
ACAAAGAGAAGAGCCTGCAATATGACAGTACCCACGACGAATACGGCCGC
CGCTTGCGCAGCCGTCAGCTTTCCACTCCCATCGGCCACGGCTGGGCCTT
TGGGGAAGACAGCAAAGAGCAGGCACCACGAGCAGCAGCAGCAGCAGTCG
AGAAAGGTGATAAGGCCACTCCTATGGGCCATGGGTGGGCTATTGGCGAA
GACGAAAAAAAGGAGATCGTGACAGCACATGTTATTGCTGCTGCTGCCGC
TGCGGCTTTGGACGGAGACAAAGTACACACACCGATGGGGCATGGCTGGA
GCTTTGAAGGCCCTGCCAAGGGTATGGATGTGGCCTTCCCGTAG
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Synonyms
Publications