NO23G01770, NO23G01770 (gene) Nannochloropsis oceanica

Overview
NameNO23G01770
Unique NameNO23G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1051
Alignment locationchr23:643748..644798 -

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Properties
Property NameValue
DescriptionThe actin binding protein cofilin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:643748..644798 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030042actin filament depolymerization
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton
GO:0005622intracellular
GO:0005856cytoskeleton
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017904ADF/Cofilin/Destrin
IPR002108ADF-H
Homology
BLAST of NO23G01770 vs. NCBI_GenBank
Match: EWM27770.1 (the actin binding protein cofilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.200e-65
Identity = 125/140 (89.29%), Postives = 134/140 (95.71%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDKIQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRFT 141
            M+TGVEAADEVGSSFSQFKLQR PYN+RYIIY IK+DKIQIEK+GARE +W+DF  DLPESDCRYAVIDVEFETDDGRPTSKI+FLSWAPDTAKVR KMVYAGSKEAIKRALVGVGIHLNATDRSELEFE+ILP+VKRFT
Sbjct:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT 159          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: EJK69270.1 (hypothetical protein THAOC_09491 [Thalassiosira oceanica])

HSP 1 Score: 198.4 bits (503), Expect = 1.500e-47
Identity = 95/142 (66.90%), Postives = 118/142 (83.10%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDK-IQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEE-ILPSVKRFT 141
            M+TGV  +DEV +SF++FKL + PY LRY IY IK+ K I I  +G R K+++DF E+LPE+DCRY +ID+EFETDDGRPTSKIVF+SW PDTA +RPKM+Y+GSKEA+K ALVGVGIH+NATD SEL+FEE ILP  K+FT
Sbjct:    1 MSTGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFEEAILPVCKKFT 142          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: XP_002289969.1 (the actin binding protein cofilin-like protein [Thalassiosira pseudonana CCMP1335] >EED93506.1 the actin binding protein cofilin-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 196.1 bits (497), Expect = 7.600e-47
Identity = 95/141 (67.38%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDK-IQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-EILPSVKRF 140
            MATGV   DEV +SF +FKL + PY LRY +Y IK+ K I IEK+G   K+++DF E+LPE+DCRY +ID+EFETDDGRPTSK+VF+SW PDTA VRPKM+Y+GSKEA+K ALVGVGIH+NATD SEL+FE  ILP VK+F
Sbjct:    1 MATGVAVDDEVSASFQKFKLGQEPYKLRYFVYEIKNKKTIVIEKQGELSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSALVGVGIHINATDHSELDFETAILPVVKKF 141          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: OQR97197.1 (actin-depolymerizing factor [Thraustotheca clavata])

HSP 1 Score: 168.3 bits (425), Expect = 1.700e-38
Identity = 83/141 (58.87%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDKIQIEKEGAREKSWKDFTEDLPE--SDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRF 140
            M++GV   D+V S F+ FKLQR PYN RY IY I+ D+I IE  G R +S++DF   L E  S+CRY +ID++F T DGRPTSK+VF+SW+PDT+K++ KMVYA SKEAIKR LVGVGI+L+ATD SEL F  I   V +F
Sbjct:    1 MSSGVGVHDDVISEFNDFKLQRAPYNFRYFIYKIEHDEIVIEHRGERSESYEDFANKLLEIQSECRYGLIDLDFTTKDGRPTSKLVFISWSPDTSKIKSKMVYASSKEAIKRCLVGVGIYLSATDASELAFSAIEDGVSKF 141          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: XP_012205098.1 (hypothetical protein SPRG_10581 [Saprolegnia parasitica CBS 223.65] >KDO24154.1 hypothetical protein SPRG_10581 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 158.7 bits (400), Expect = 1.300e-35
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIK-DDKIQIEKEGAREKSWKDFTEDL--PESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRF 140
            M++GV  +D+V + F+ FKLQ+ PYN RY IY I+ D +I IE  G R +++ DF   L    ++CRY +ID++F T DGRPTSK+VF+SW+PDTA+V+ KM+YA SKEAIKR LVGVGI+L+ATD SEL F  I   V +F
Sbjct:    1 MSSGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSKF 142          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: OEU18465.1 (actin depolymerazing factor [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 158.3 bits (399), Expect = 1.700e-35
Identity = 78/141 (55.32%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDK-IQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEE-ILPSVKRF 140
            M++GV   DE+G  F  FKLQ+ P  +RY +Y I++ K I I   G R  ++ DF +DLPE++ RY +ID++FET DGRPTSK+VF+SW PDTA VR KM+Y+ SKE+IK AL GVGIH+NATD +EL+ ++ ILP VK+F
Sbjct:    1 MSSGVAVEDEIGEKFQDFKLQKSP--IRYYVYKIENKKTIVIASSGERSATYADFVKDLPENEPRYGLIDLDFETKDGRPTSKLVFISWVPDTASVREKMLYSSSKESIKAALNGVGIHINATDSAELDLDDSILPVVKKF 139          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: GAX11768.1 (cofilin [Fistulifera solaris])

HSP 1 Score: 158.3 bits (399), Expect = 1.700e-35
Identity = 80/141 (56.74%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDK-IQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-EILPSVKRF 140
            M+TGV  ADEV S+F+ FKL +    L+YIIY I+D K I  EK G + K++ DF  DLP+ DCRY +ID++F TDDGRPTSK+V ++W PD+  +R KM+Y+GSKEA+K AL GVGIH+NATD SEL+ E  ILP  ++F
Sbjct:    1 MSTGVVVADEVTSTFNAFKLGQGE-KLKYIIYKIEDKKTIVTEKTGEKGKTYDDFCADLPDDDCRYGLIDLDFTTDDGRPTSKLVLITWNPDSGSIRNKMLYSGSKEALKTALNGVGIHINATDHSELDLEASILPICRKF 140          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: GAX20835.1 (cofilin [Fistulifera solaris])

HSP 1 Score: 157.9 bits (398), Expect = 2.300e-35
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDK-IQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-EILPSVKRF 140
            M+TGV  ADEV S+F+ FKL +    L+YIIY I+D K I  EK G + K++ DF  DLP+ DCRY +ID++F TDDGRPTSK+V ++W PD+  +R KM+Y+GSKEA+K AL GVGIH+NATD SEL+ E  +LP  ++F
Sbjct:    1 MSTGVVVADEVTSTFNAFKLGQGE-KLKYIIYKIEDKKTIVTEKTGEKGKTYDDFCADLPDDDCRYGLIDLDFTTDDGRPTSKLVLITWNPDSGSIRNKMLYSGSKEALKTALNGVGIHINATDHSELDLEASVLPICRKF 140          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: XP_008907920.1 (hypothetical protein PPTG_12927 [Phytophthora parasitica INRA-310] >ETI43300.1 hypothetical protein F443_11729 [Phytophthora parasitica P1569] >ETK83368.1 hypothetical protein L915_11419 [Phytophthora parasitica] >ETL36766.1 hypothetical protein L916_11324 [Phytophthora parasitica] >ETL89960.1 hypothetical protein L917_11216 [Phytophthora parasitica] >ETM43254.1 hypothetical protein L914_11262 [Phytophthora parasitica] >ETN06952.1 hypothetical protein PPTG_12927 [Phytophthora parasitica INRA-310] >ETO71951.1 hypothetical protein F444_11813 [Phytophthora parasitica P1976] >ETP13083.1 hypothetical protein F441_11663 [Phytophthora parasitica CJ01A1] >ETP41172.1 hypothetical protein F442_11631 [Phytophthora parasitica P10297] >KUF94281.1 Actin-depolymerizing factor [Phytophthora nicotianae])

HSP 1 Score: 157.1 bits (396), Expect = 3.900e-35
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDD-KIQIEKEGAREKSWKDFTEDLPE--SDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRF 140
            M++GV   DEV + F+ FKL+R P++ RY IY I+DD +I IE  G   +S++D  + L +  +DCRYA++D++  T DGRPTSKIVFLSW+PDTA+++ KM+YA SKEAIKR L+GVGIHL ATD SEL  E I   V +F
Sbjct:    1 MSSGVGVDDEVITQFNDFKLKRAPHDFRYFIYKIEDDSQIVIESTGPSSESYQDMADKLAQITNDCRYALVDLDLTTKDGRPTSKIVFLSWSPDTARIKSKMLYASSKEAIKRVLMGVGIHLTATDASELSLESIEDGVAKF 142          
BLAST of NO23G01770 vs. NCBI_GenBank
Match: XP_024573950.1 (the actin binding protein cofilin-like protein [Plasmopara halstedii] >CEG37581.1 the actin binding protein cofilin-like protein [Plasmopara halstedii])

HSP 1 Score: 156.8 bits (395), Expect = 5.100e-35
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDD-KIQIEKEGAREKSWKDFTEDLPE--SDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRF 140
            M++GV   DEV + F+ FKL+R P++ RY IY I+DD +I IE  G   +S++D  + L +  +DCRYA++D++  T DGRPTSKIVFLSW+PDTA+++ KM+YA SKEAIKR L+GVGIHL ATD SEL  E I   V +F
Sbjct:    1 MSSGVGVDDEVITQFNDFKLKRAPHDYRYFIYKIEDDSQIVIESTGPSSESYQDMADKLAKITNDCRYALVDLDLTTKDGRPTSKIVFLSWSPDTARIKSKMLYASSKEAIKRVLMGVGIHLTATDASELSLESIEDGVSKF 142          
The following BLAST results are available for this feature:
BLAST of NO23G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27770.11.200e-6589.29the actin binding protein cofilin-like protein [Na... [more]
EJK69270.11.500e-4766.90hypothetical protein THAOC_09491 [Thalassiosira oc... [more]
XP_002289969.17.600e-4767.38the actin binding protein cofilin-like protein [Th... [more]
OQR97197.11.700e-3858.87actin-depolymerizing factor [Thraustotheca clavata... [more]
XP_012205098.11.300e-3554.93hypothetical protein SPRG_10581 [Saprolegnia paras... [more]
OEU18465.11.700e-3555.32actin depolymerazing factor [Fragilariopsis cylind... [more]
GAX11768.11.700e-3556.74cofilin [Fistulifera solaris][more]
GAX20835.12.300e-3556.03cofilin [Fistulifera solaris][more]
XP_008907920.13.900e-3554.93hypothetical protein PPTG_12927 [Phytophthora para... [more]
XP_024573950.15.100e-3554.93the actin binding protein cofilin-like protein [Pl... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR124ngnoR124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010474NSK010474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01770.1NO23G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674374gene_10014Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100187g6gene2785Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01770.1NO23G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01770 ID=NO23G01770|Name=NO23G01770|organism=Nannochloropsis oceanica|type=gene|length=1051bp
AGAGAAACGCAAGCCTTCCGTCACCACGATTTTGAAGCTGCCTTGGGACT
CCACCTCCATCAACCCAACACAGAGCAGGGGGTTACTGCATGCCGTGGGT
TTGTGTTGAGGGGAATGGCTGCCCTTGCCAATCGACGGGAAATTCCCTCC
GCACTCATGATCATCACCAGGAGATCCCAACGAACCGAGTAGTTAGTGCG
TTGCGCTTCTCACGTTTCCCCTTCCACCCACATGGACACAGACTTGTATC
TTGCTCGAGCACACAACCATGgtaagtctccccacttatgtactccccct
caaaattccccacccccgccgactggtcacacctcttcttatcccgctca
tcctccccccacccccccttcctccctcctgctccagGCCACGGGCGTCG
AAGCCGCGGACGAGGTGGGCTCATCCTTCAGTCAGTTCAAGCTCCAACGA
CCTCCCTACAATCTTCGCTACATCATCTACGTGATCAAGGACGACAAGAT
CCAGATCGAGAAGGAAGGCGCCCGGGgtaagggaaggaggagtgagggag
gaagggaggaaagtagggtggtgcgcgagcaggtggaatggatggacgtc
atggaagagttggggaagtatgtttggatgtaatacaaataatttctata
ttgctgtgtttgttcacaccctacattccagttcaccgttaatcaccttc
gcacactccctccctccctcccttccttcctccttcccccacagAGAAAT
CCTGGAAGGATTTCACCGAAGACTTGCCCGAGAGCGACTGTCGCTACGCC
GTCATCGACGTGGAGTTCGAAACGGACGATGGTCGACCAACGAGCAAGAT
TGTGTTCTTGTCCTGGGCTCCGGACACGGCCAAGGTGAGGCCTAAGATGG
TGTATGCCGGGTCGAAAGAGGCGATTAAGAGGGCCTTGGTTGGAGTGGGG
ATCCACCTGAACGCCACGGACAGGAGTGAGCTCGAGTTTGAGGAGATCCT
ACCGAGCGTCAAGAGGTTTACTTGAGAGGGAGGGAGGGAGGGAGGGAGGG
T
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protein sequence of NO23G01770.1

>NO23G01770.1-protein ID=NO23G01770.1-protein|Name=NO23G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDKIQIEKEGAREKS
WKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMV
YAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRFT*
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Synonyms
Publications