NO23G01770.1, NO23G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01770.1
Unique NameNO23G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr23:643748..644798 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:643748..644798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01770.1 vs.
Match: EWM27770.1 (the actin binding protein cofilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.200e-65
Identity = 125/140 (89.29%), Postives = 134/140 (95.71%), Query Frame = 0 
Query:    1 MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDKIQIEKEGAREKSWKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRFT 141
            M+TGVEAADEVGSSFSQFKLQR PYN+RYIIY IK+DKIQIEK+GARE +W+DF  DLPESDCRYAVIDVEFETDDGRPTSKI+FLSWAPDTAKVR KMVYAGSKEAIKRALVGVGIHLNATDRSELEFE+ILP+VKRFT
Sbjct:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT 159
The following BLAST results are available for this feature:
BLAST of NO23G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27770.11.200e-6589.29the actin binding protein cofilin-like protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01770NO23G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01770.1NO23G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01770.1.cds1NO23G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01770.1.cds2NO23G01770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01770.1.cds3NO23G01770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01770.1 ID=NO23G01770.1|Name=NO23G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
AGAGAAACGCAAGCCTTCCGTCACCACGATTTTGAAGCTGCCTTGGGACT
CCACCTCCATCAACCCAACACAGAGCAGGGGGTTACTGCATGCCGTGGGT
TTGTGTTGAGGGGAATGGCTGCCCTTGCCAATCGACGGGAAATTCCCTCC
GCACTCATGATCATCACCAGGAGATCCCAACGAACCGAGTAGTTAGTGCG
TTGCGCTTCTCACGTTTCCCCTTCCACCCACATGGACACAGACTTGTATC
TTGCTCGAGCACACAACCATGGCCACGGGCGTCGAAGCCGCGGACGAGGT
GGGCTCATCCTTCAGTCAGTTCAAGCTCCAACGACCTCCCTACAATCTTC
GCTACATCATCTACGTGATCAAGGACGACAAGATCCAGATCGAGAAGGAA
GGCGCCCGGGAGAAATCCTGGAAGGATTTCACCGAAGACTTGCCCGAGAG
CGACTGTCGCTACGCCGTCATCGACGTGGAGTTCGAAACGGACGATGGTC
GACCAACGAGCAAGATTGTGTTCTTGTCCTGGGCTCCGGACACGGCCAAG
GTGAGGCCTAAGATGGTGTATGCCGGGTCGAAAGAGGCGATTAAGAGGGC
CTTGGTTGGAGTGGGGATCCACCTGAACGCCACGGACAGGAGTGAGCTCG
AGTTTGAGGAGATCCTACCGAGCGTCAAGAGGTTTACTTGAGAGGGAGGG
AGGGAGGGAGGGAGGGT
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protein sequence of NO23G01770.1

>NO23G01770.1-protein ID=NO23G01770.1-protein|Name=NO23G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MATGVEAADEVGSSFSQFKLQRPPYNLRYIIYVIKDDKIQIEKEGAREKS
WKDFTEDLPESDCRYAVIDVEFETDDGRPTSKIVFLSWAPDTAKVRPKMV
YAGSKEAIKRALVGVGIHLNATDRSELEFEEILPSVKRFT*
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mRNA from alignment at chr23:643748..644798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01770.1 ID=NO23G01770.1|Name=NO23G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp|location=Sequence derived from alignment at chr23:643748..644798- (Nannochloropsis oceanica)
AGAGAAACGCAAGCCTTCCGTCACCACGATTTTGAAGCTGCCTTGGGACT
CCACCTCCATCAACCCAACACAGAGCAGGGGGTTACTGCATGCCGTGGGT
TTGTGTTGAGGGGAATGGCTGCCCTTGCCAATCGACGGGAAATTCCCTCC
GCACTCATGATCATCACCAGGAGATCCCAACGAACCGAGTAGTTAGTGCG
TTGCGCTTCTCACGTTTCCCCTTCCACCCACATGGACACAGACTTGTATC
TTGCTCGAGCACACAACCATGGTAAGTCTCCCCACTTATGTACTCCCCCT
CAAAATTCCCCACCCCCGCCGACTGGTCACACCTCTTCTTATCCCGCTCA
TCCTCCCCCCACCCCCCCTTCCTCCCTCCTGCTCCAGGCCACGGGCGTCG
AAGCCGCGGACGAGGTGGGCTCATCCTTCAGTCAGTTCAAGCTCCAACGA
CCTCCCTACAATCTTCGCTACATCATCTACGTGATCAAGGACGACAAGAT
CCAGATCGAGAAGGAAGGCGCCCGGGGTAAGGGAAGGAGGAGTGAGGGAG
GAAGGGAGGAAAGTAGGGTGGTGCGCGAGCAGGTGGAATGGATGGACGTC
ATGGAAGAGTTGGGGAAGTATGTTTGGATGTAATACAAATAATTTCTATA
TTGCTGTGTTTGTTCACACCCTACATTCCAGTTCACCGTTAATCACCTTC
GCACACTCCCTCCCTCCCTCCCTTCCTTCCTCCTTCCCCCACAGAGAAAT
CCTGGAAGGATTTCACCGAAGACTTGCCCGAGAGCGACTGTCGCTACGCC
GTCATCGACGTGGAGTTCGAAACGGACGATGGTCGACCAACGAGCAAGAT
TGTGTTCTTGTCCTGGGCTCCGGACACGGCCAAGGTGAGGCCTAAGATGG
TGTATGCCGGGTCGAAAGAGGCGATTAAGAGGGCCTTGGTTGGAGTGGGG
ATCCACCTGAACGCCACGGACAGGAGTGAGCTCGAGTTTGAGGAGATCCT
ACCGAGCGTCAAGAGGTTTACTTGAGAGGGAGGGAGGGAGGGAGGGAGGG
T
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Coding sequence (CDS) from alignment at chr23:643748..644798-

>NO23G01770.1 ID=NO23G01770.1|Name=NO23G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr23:643748..644798- (Nannochloropsis oceanica)
ATGGCCACGGGCGTCGAAGCCGCGGACGAGGTGGGCTCATCCTTCAGTCA
GTTCAAGCTCCAACGACCTCCCTACAATCTTCGCTACATCATCTACGTGA
TCAAGGACGACAAGATCCAGATCGAGAAGGAAGGCGCCCGGGAGAAATCC
TGGAAGGATTTCACCGAAGACTTGCCCGAGAGCGACTGTCGCTACGCCGT
CATCGACGTGGAGTTCGAAACGGACGATGGTCGACCAACGAGCAAGATTG
TGTTCTTGTCCTGGGCTCCGGACACGGCCAAGGTGAGGCCTAAGATGGTG
TATGCCGGGTCGAAAGAGGCGATTAAGAGGGCCTTGGTTGGAGTGGGGAT
CCACCTGAACGCCACGGACAGGAGTGAGCTCGAGTTTGAGGAGATCCTAC
CGAGCGTCAAGAGGTTTACTTGA
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Synonyms
Publications