NO23G01740, NO23G01740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO23G01740 vs. NCBI_GenBank
Match: EWM27775.1 (translation initiation factor if-3 [Nannochloropsis gaditana]) HSP 1 Score: 288.9 bits (738), Expect = 1.700e-74 Identity = 158/175 (90.29%), Postives = 166/175 (94.86%), Query Frame = 0 Query: 100 RPPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKKTI 275 +PPMNDALLR+AP NVRVVISNPE+GDEMAGVMAT EAL KAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIE HDYGVRMKQMTRFL+EGDKVKVM+QFRGREQQHIDLGHELLGK+ D ELAVQEG VRREGGRLIA+FKPKKT+ Sbjct: 161 KPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV 335
BLAST of NO23G01740 vs. NCBI_GenBank
Match: XP_005854774.1 (hypothetical protein NGA_0369010, partial [Nannochloropsis gaditana CCMP526] >EKU21590.1 hypothetical protein NGA_0369010, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 164.5 bits (415), Expect = 4.800e-37 Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 0 Query: 100 RPPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYG 204 +PPMNDALLR+AP NVRVVISNPE+GDEMAGVMAT EAL KAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXX VKEVKMSYKIE HDYG Sbjct: 254 KPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXXVKEVKMSYKIENHDYG 357
BLAST of NO23G01740 vs. NCBI_GenBank
Match: CBN75133.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 155.6 bits (392), Expect = 2.200e-34 Identity = 84/173 (48.55%), Postives = 114/173 (65.90%), Query Frame = 0 Query: 101 PPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKKT 274 P MN+ + VR VIS + DE G+M+T++AL +A + GLDL+MI++ A PPVVKIIDYGKFKY ++ E+KEVKMSYKIETHDY VR++ +F+++G +V+++V FRGREQ H+DLG+ LL K+ D LA+ E RREG RL + PK T Sbjct: 117 PDMNEEIAASGIEEVRCVIS-VKGMDEQLGIMSTQQALQRASDEGLDLVMITKDAQPPVVKIIDYGKFKYKRDRRKKDNKAKHKATEMKEVKMSYKIETHDYMVRLRNAQKFVKQGHRVRIVVTFRGREQSHMDLGNVLLDKVTNDLEGLALVE-PKRREGNRLSMIVFPKPT 287
BLAST of NO23G01740 vs. NCBI_GenBank
Match: GAX13970.1 (translation initiation factor IF-3 [Fistulifera solaris]) HSP 1 Score: 150.2 bits (378), Expect = 9.300e-33 Identity = 81/175 (46.29%), Postives = 109/175 (62.29%), Query Frame = 0 Query: 101 PPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEM-GLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKKTI 275 P MN+ + +RV+ S DE G+M+ +AL KAKE+ GLDLI+I++ ADPPV KI DY K++Y LEK EVKEVKMSYKI+ HDY VR K +F+++G++VK V FRGRE QH +LG +LL K+ VD + ++E +REG L +F PK I Sbjct: 99 PVMNE---EIKAKEIRVIASVTGGKDEALGIMSLVDALAKAKELGGLDLILINDKADPPVCKIADYSKYRYMLEKKAKELKKNSKATEVKEVKMSYKIDVHDYDVRKKSAIKFIKQGNRVKATVMFRGREVQHDNLGFDLLEKLAVDLSSVCIKESRPKREGRNLSIIFSPKAEI 270
BLAST of NO23G01740 vs. NCBI_GenBank
Match: XP_002179383.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49206.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 149.4 bits (376), Expect = 1.600e-32 Identity = 82/183 (44.81%), Postives = 111/183 (60.66%), Query Frame = 0 Query: 90 RWGPPEVDPDRPPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEM-GLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPK 272 R GPP V +P MN + +RVV P DE G+M+ EAL KAKEM GLDLI+++ +DPPV KI+DY K++Y LEK E+KEVKMSYKI+ HDY VR K ++FL++G++VK V FRGRE QH +LG +LL ++ + E + E +REG L + P+ Sbjct: 8 RRGPP-VQEKKPTMNG---EIENRELRVVTPTPLGKDEPLGIMSRDEALAKAKEMGGLDLILVNNNSDPPVCKIVDYSKYRYQLEKKAKEVKKNSKGTEIKEVKMSYKIDVHDYSVRKKSASKFLKQGNRVKCTVMFRGREVQHDNLGFDLLNRLASELEEYCMTESKPKREGRNLSLILTPR 186
BLAST of NO23G01740 vs. NCBI_GenBank
Match: GAX17471.1 (translation initiation factor IF-3 [Fistulifera solaris]) HSP 1 Score: 149.1 bits (375), Expect = 2.100e-32 Identity = 79/175 (45.14%), Postives = 109/175 (62.29%), Query Frame = 0 Query: 101 PPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEM-GLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKKTI 275 P MN+ + +RV+ S DE G+M+ +AL KAKE+ GLDLI+I++ ADPPV KI DY K++Y LEK E+KEVKMSYKI+ HDY VR K +F+++G++VK V FRGRE QH +LG +LL K+ VD + ++E +REG + +F PK I Sbjct: 48 PVMNE---EIKAKEIRVIASVTGGKDEALGIMSLVDALAKAKELGGLDLILINDKADPPVCKIADYSKYRYMLEKKAKELKKNSKATEIKEVKMSYKIDVHDYDVRKKSAIKFIKQGNRVKATVMFRGREVQHDNLGFDLLEKLAVDLSSVCIKESRPKREGRNISIIFSPKAEI 219
BLAST of NO23G01740 vs. NCBI_GenBank
Match: WP_096719022.1 (translation initiation factor IF-3 [Chondrocystis sp. NIES-4102] >BAZ44214.1 translation initiation factor IF-3 [Chondrocystis sp. NIES-4102]) HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31 Identity = 78/159 (49.06%), Postives = 102/159 (64.15%), Query Frame = 0 Query: 114 NVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKK 273 N+RV+ S EG+++ G++ KEAL A E GLDL+++SETADPPV KI+DYGK+KY +K +VKEVKM YKIE HDY VR+K RFL+ GDKVK + FRGRE QH L +LL ++ D E A + +REG ++ M PKK Sbjct: 24 NIRVIDS---EGEQL-GIITPKEALAIAVEKGLDLVLVSETADPPVCKIMDYGKYKYEQDKKLKEAKKKQHNADVKEVKMRYKIEEHDYNVRVKNAQRFLKSGDKVKATISFRGREIQHSKLAEDLLHRMAKDLEEYAEVQQYPKREGRNMMMMLSPKK 178
BLAST of NO23G01740 vs. NCBI_GenBank
Match: WP_069443854.1 (translation initiation factor IF-3 [Methyloceanibacter stevinii] >ODR95658.1 translation initiation factor IF-3 [Methyloceanibacter stevinii]) HSP 1 Score: 146.0 bits (367), Expect = 1.800e-31 Identity = 71/145 (48.97%), Postives = 95/145 (65.52%), Query Frame = 0 Query: 127 EMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPK 272 E GV+ ++AL +A E GLDL+ IS DPPV KI+DYGK+KY +K E+KE+KM I+THDY V+M+ M RF EEGDKVKV ++FRGRE H DLG +LL K+KVD E+A E + R EG +++ + P+ Sbjct: 29 ENVGVVEIEDALARASEAGLDLVEISPNTDPPVCKILDYGKYKYQAQKKATEARKKQRTVEIKEIKMRPNIDTHDYDVKMRSMNRFFEEGDKVKVTLRFRGREMAHQDLGMQLLNKVKVDTTEIAKVESEPRLEGRQMVMVLAPR 173
BLAST of NO23G01740 vs. NCBI_GenBank
Match: WP_019507465.1 (translation initiation factor IF-3 [Pleurocapsa sp. PCC 7319]) HSP 1 Score: 145.6 bits (366), Expect = 2.300e-31 Identity = 82/159 (51.57%), Postives = 109/159 (68.55%), Query Frame = 0 Query: 114 NVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKK 273 N+RV+ S EG+++ G++ KEAL A+E GLDL+++SE+ADPPV KI+DYGK+KY +K XXXXXX +VKEVKM YKIE HDY VR+K RFL+ GDKVK + FRGRE QH L +LL ++ D + A + +REG ++ M PKK Sbjct: 24 NIRVIDS---EGEQL-GIITPKEALAIAQEKGLDLVLVSESADPPVCKIMDYGKYKYEQDKKQKXXXXXXHNADVKEVKMRYKIEEHDYNVRVKNAQRFLKSGDKVKATISFRGREIQHSRLAEDLLRRMAKDLEDYAEVQQSPKREGRNMMMMLSPKK 178
BLAST of NO23G01740 vs. NCBI_GenBank
Match: WP_108682138.1 (translation initiation factor IF-3 [Methyloceanibacter sp. wino2]) HSP 1 Score: 145.6 bits (366), Expect = 2.300e-31 Identity = 71/145 (48.97%), Postives = 95/145 (65.52%), Query Frame = 0 Query: 127 EMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKXXXXXXXXXXXXEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPK 272 E GV+ ++AL +A E GLDL+ IS DPPV KI+DYGK+KY +K E+KE+KM I+THDY V+M+ M RF EEGDKVKV ++FRGRE H DLG +LL K+KVD E+A E + R EG +++ + P+ Sbjct: 29 ENVGVVDIEDALARASEAGLDLVEISPNTDPPVCKILDYGKYKYQAQKKAAEARKKQRTVEIKEIKMRPNIDTHDYDVKMRSMNRFFEEGDKVKVTLRFRGREMAHQDLGMQLLNKVKVDTTEIAKVESEPRLEGRQMVMVLAPR 173 The following BLAST results are available for this feature:
BLAST of NO23G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G01740 ID=NO23G01740|Name=NO23G01740|organism=Nannochloropsis oceanica|type=gene|length=2502bpback to top protein sequence of NO23G01740.1 >NO23G01740.1-protein ID=NO23G01740.1-protein|Name=NO23G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bpback to top Synonyms
Publications
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