NO23G01740.1, NO23G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01740.1
Unique NameNO23G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2103
Alignment locationchr23:634718..637219 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:634718..637219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01740.1 vs.
Match: EWM27775.1 (translation initiation factor if-3 [Nannochloropsis gaditana])

HSP 1 Score: 391.3 bits (1004), Expect = 2.400e-105
Identity = 217/266 (81.58%), Postives = 233/266 (87.59%), Query Frame = 0 
Query:   10 SRCLLALCLTLCLIAMVSAFLTAPTLPSRLSSAS-STTSSIRTYSTRPPFPRPPGGGGGPGRPPFRPGGPPRPGGGGGQRNRWGPPEVDPDRPPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIETHDYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVELAVQEGDVRREGGRLIAMFKPKKTI 275
            SR L+ LCLTL  + +V+AF  AP LP+ +S +S S  S IR YSTRPP PRPPG GGGP RPPFRP  P RP GGG  RNRWGPPEVDP++PPMNDALLR+AP NVRVVISNPE+GDEMAGVMAT EAL KAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIE HDYGVRMKQMTRFL+EGDKVKVM+QFRGREQQHIDLGHELLGK+  D  ELAVQEG VRREGGRLIA+FKPKKT+
Sbjct:   74 SRSLVTLCLTLGFMYLVTAF-HAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSP-RPSGGG--RNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV 335
The following BLAST results are available for this feature:
BLAST of NO23G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27775.12.400e-10581.58translation initiation factor if-3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01740NO23G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01740.1NO23G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01740.1.cds1NO23G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01740.1.cds2NO23G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01740.1 ID=NO23G01740.1|Name=NO23G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp
CGGCTGCTGCGGCTGCGATAAACTGGCGGAACAAGGAGAAGGAAGAGGAA
CATTAGGTGTTGCTTCCAGCCGGGCGGTGAAGGAGGAAGAGGCCATGTGT
ATATCTAATGAGAAGAATACTGAGCTACTGATGGTATACAAATGTGGGTG
GAAAGAAGATGGTGTGAGAGGAGATAAATGAGGGAGAGGGAGAAAAGTGG
TAAGAGGAGATGTCGCCGAGGAGGAAAAAAAGAAATCAGTAAAAAAAATC
AGCAAAACATAGATGAGAGGATAATTTTGCAGACGCTTTCAGTGCGGTAA
GTGCTTTTAAATATGGAGAAGGCGGATGCCAAATGCGACCTCCTCCCTCC
TCCTTCTCTCACTGAAGAAGCCAACGGACATAATGGAAGATCGAAGTGTC
TGGCGATTGGGGATGATCAGCACCAGCAGCAGGCAGGCCATGGGCTGGCT
ATTTTGCCAAGGTTGTTGCTTCCACGCTGTTAGTGGTGTTGCAGTTGTAT
GTGGGGGGGGCGGCGTTGTGGGTAGAATGCAGTGCATGTTGTGACTATTT
TTAGCAGGGGCACGCACGCCTGATTGGATATCTCCATTCTGCCTCATCCC
CTCACACTTTGACCACGCCCGTCCCCGCTCAACAACAACAGACCATGTCG
CTGGCTGGGCTAGTTCAGGGGCCATCGTGCGTGCTGGTCATGCTCAGCTG
ACATGCATGTGTCGTATTGCTCTCATAACACACCAGCAGCATTGTCACCA
GCCACGTCATTTTATATAACCAGAATGCCAGGTTTGCCGCACGAGCACAT
GACCTTGGCAAGATACATCGCTCTACAGCGCGCGAGGCTTCTCCAAACTT
ACCCACATACGCACCTCTCCGCTTATTCAAACCCATACAGGTTCCGCACC
CAAGCACCTTGGGAAGGACCGCAAGCATGCAGCCGAGTAGCAGCAGCAGC
GGCAGCAGGTGCCTATTGGCGCTCTGCCTAACTCTTTGCCTAATAGCCAT
GGTCAGCGCCTTCCTGACCGCCCCCACCCTCCCCTCCAGACTTTCGTCCG
CCTCCTCCACCACCTCCTCAATAAGAACATACAGCACGCGCCCCCCCTTC
CCCCGCCCTCCCGGTGGTGGTGGAGGACCAGGCCGTCCCCCCTTCCGTCC
TGGCGGCCCCCCTCGTCCCGGGGGAGGAGGCGGTCAACGCAATCGTTGGG
GTCCGCCGGAAGTGGATCCAGACAGGCCACCGATGAATGATGCTCTCTTG
AGGCTGGCGCCGAACAACGTCCGTGTGGTGATATCGAACCCGGAGGAGGG
GGACGAGATGGCGGGGGTGATGGCCACCAAGGAGGCATTGATGAAAGCCA
AGGAGATGGGGCTAGACCTGATCATGATCTCCGAGACGGCCGACCCCCCC
GTGGTGAAGATCATCGACTACGGCAAGTTCAAGTACTCGCTGGAGAAGAA
GAAGAAGGAGCAGAAGAAGAAGGCCAAGACGACGGAGGTTAAGGAGGTGA
AGATGTCGTACAAGATCGAGACGCACGACTATGGGGTGCGCATGAAGCAG
ATGACCCGATTCTTGGAGGAGGGGGACAAAGTTAAGGTGATGGTTCAATT
CCGTGGTCGTGAGCAGCAGCACATTGACCTGGGCCACGAGCTGCTCGGGA
AGATTAAGGTGGATTTTGTGGAGCTGGCGGTGCAGGAGGGGGACGTACGG
AGGGAGGGAGGGAGGTTGATTGCCATGTTCAAGCCGAAGAAGACGATTTA
AAGGGAAGGAAAGAGGGAAGGAGGGAGTGAGGGGGGGGCGAAAACAGAAA
TAAATATGAAGAGTGTGGAGACACAGCACCAGCAGCACACAAGGCTGAGG
ATAGATGAGGCTGGAACAGGGAGGGAGGAGAAAGAGGGAAGAAGAGTTCG
AAGACGATCGAGAGGTGAGAGAGACAGGTGAGGAGCCTGTATTCCTCCGC
TCCCTCCCTTCTTCCCTCCCTTACTCACTCTCTATGGATAAACGCAGCCC
AAGGCCCCTCTCGCTCTCCCTGGAAGGGATGGGCGGACGTGGGGGAAGGG
AAGAAGAAGGAGCTTACAAGAAGAATTAAGTACGTGCGAGGGAAAACGAC
GAG
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protein sequence of NO23G01740.1

>NO23G01740.1-protein ID=NO23G01740.1-protein|Name=NO23G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MQPSSSSSGSRCLLALCLTLCLIAMVSAFLTAPTLPSRLSSASSTTSSIR
TYSTRPPFPRPPGGGGGPGRPPFRPGGPPRPGGGGGQRNRWGPPEVDPDR
PPMNDALLRLAPNNVRVVISNPEEGDEMAGVMATKEALMKAKEMGLDLIM
ISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIETH
DYGVRMKQMTRFLEEGDKVKVMVQFRGREQQHIDLGHELLGKIKVDFVEL
AVQEGDVRREGGRLIAMFKPKKTI*
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mRNA from alignment at chr23:634718..637219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01740.1 ID=NO23G01740.1|Name=NO23G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2502bp|location=Sequence derived from alignment at chr23:634718..637219+ (Nannochloropsis oceanica)
CGGCTGCTGCGGCTGCGATAAACTGGCGGAACAAGGAGAAGGAAGAGGAA
CATTAGGTGTTGCTTCCAGCCGGGCGGTGAAGGAGGAAGAGGCCATGTGT
ATATCTAATGAGAAGAATACTGAGCTACTGATGGTATACAAATGTGGGTG
GAAAGAAGATGGTGTGAGAGGAGATAAATGAGGGAGAGGGAGAAAAGTGG
TAAGAGGAGATGTCGCCGAGGAGGAAAAAAAGAAATCAGTAAAAAAAATC
AGCAAAACATAGATGAGAGGATAATTTTGCAGACGCTTTCAGTGCGGTAA
GTGCTTTTAAATATGGAGAAGGCGGATGCCAAATGCGACCTCCTCCCTCC
TCCTTCTCTCACTGAAGAAGCCAACGGACATAATGGAAGATCGAAGTGTC
TGGCGATTGGGGATGATCAGCACCAGCAGCAGGCAGGCCATGGGCTGGCT
ATTTTGCCAAGGTTGTTGCTTCCACGCTGTTAGTGGTGTTGCAGTTGTAT
GTGGGGGGGGCGGCGTTGTGGGTAGAATGCAGTGCATGTTGTGACTATTT
TTAGCAGGGGCACGCACGCCTGATTGGATATCTCCATTCTGCCTCATCCC
CTCACACTTTGACCACGCCCGTCCCCGCTCAACAACAACAGACCATGTCG
CTGGCTGGGCTAGTTCAGGGGCCATCGTGCGTGCTGGTCATGCTCAGCTG
ACATGCATGTGTCGTATTGCTCTCATAACACACCAGCAGCATTGTCACCA
GCCACGTCATTTTATATAACCAGAATGCCAGGTTTGCCGCACGAGCACAT
GACCTTGGCAAGATACATCGCTCTACAGCGCGCGAGGCTTCTCCAAACTT
ACCCACATACGCACCTCTCCGCTTATTCAAACCCATACAGGTTCCGCACC
CAAGCACCTTGGGAAGGACCGCAAGCATGCAGCCGAGTAGCAGCAGCAGC
GGCAGCAGGTGCCTATTGGCGCTCTGCCTAACTCTTTGCCTAATAGCCAT
GGTACGTGCGTAGGCCGGTCATGTGTCTCATAGTCTGTATGTATGTACAG
GAGCCCAAGAGCGGTGGCATGTAGTCCCAGCAACAGCAGCAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACACCACTAGGAGGAGGCGG
GGGAGGAGGTAATGGCAGCAGCAGCAGCAGCAACAGCGACTACAGGCTGC
TGCTGTCGCATGGGTGCAATTTGAGGGCGTGTTAGTTGCTTCTTGTGCGG
TGTTCAAAAAATTGTCAGTCCAGCAAATGCGGGTTTAGCTTGAGATAAAG
ATTGATTCTGCCCCATAAACATACACGAGCGGCCACATCATATGCACTCA
CCATCCCTTCCTCCCTCCATCCCTCCCCTCCTTCCCCCCCGACAAACCAG
GTCAGCGCCTTCCTGACCGCCCCCACCCTCCCCTCCAGACTTTCGTCCGC
CTCCTCCACCACCTCCTCAATAAGAACATACAGCACGCGCCCCCCCTTCC
CCCGCCCTCCCGGTGGTGGTGGAGGACCAGGCCGTCCCCCCTTCCGTCCT
GGCGGCCCCCCTCGTCCCGGGGGAGGAGGCGGTCAACGCAATCGTTGGGG
TCCGCCGGAAGTGGATCCAGACAGGCCACCGATGAATGATGCTCTCTTGA
GGCTGGCGCCGAACAACGTCCGTGTGGTGATATCGAACCCGGAGGAGGGG
GACGAGATGGCGGGGGTGATGGCCACCAAGGAGGCATTGATGAAAGCCAA
GGAGATGGGGCTAGACCTGATCATGATCTCCGAGACGGCCGACCCCCCCG
TGGTGAAGATCATCGACTACGGCAAGTTCAAGTACTCGCTGGAGAAGAAG
AAGAAGGAGCAGAAGAAGAAGGCCAAGACGACGGAGGTTAAGGAGGTGAA
GATGTCGTACAAGATCGAGACGCACGACTATGGGGTGCGCATGAAGCAGA
TGACCCGATTCTTGGAGGAGGGGGACAAAGTTAAGGTGATGGTTCAATTC
CGTGGTCGTGAGCAGCAGCACATTGACCTGGGCCACGAGCTGCTCGGGAA
GATTAAGGTGGATTTTGTGGAGCTGGCGGTGCAGGAGGGGGACGTACGGA
GGGAGGGAGGGAGGTTGATTGCCATGTTCAAGCCGAAGAAGACGATTTAA
AGGGAAGGAAAGAGGGAAGGAGGGAGTGAGGGGGGGGCGAAAACAGAAAT
AAATATGAAGAGTGTGGAGACACAGCACCAGCAGCACACAAGGCTGAGGA
TAGATGAGGCTGGAACAGGGAGGGAGGAGAAAGAGGGAAGAAGAGTTCGA
AGACGATCGAGAGGTGAGAGAGACAGGTGAGGAGCCTGTATTCCTCCGCT
CCCTCCCTTCTTCCCTCCCTTACTCACTCTCTATGGATAAACGCAGCCCA
AGGCCCCTCTCGCTCTCCCTGGAAGGGATGGGCGGACGTGGGGGAAGGGA
AGAAGAAGGAGCTTACAAGAAGAATTAAGTACGTGCGAGGGAAAACGACG
AG
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Coding sequence (CDS) from alignment at chr23:634718..637219+

>NO23G01740.1 ID=NO23G01740.1|Name=NO23G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr23:634718..637219+ (Nannochloropsis oceanica)
ATGCAGCCGAGTAGCAGCAGCAGCGGCAGCAGGTGCCTATTGGCGCTCTG
CCTAACTCTTTGCCTAATAGCCATGGTCAGCGCCTTCCTGACCGCCCCCA
CCCTCCCCTCCAGACTTTCGTCCGCCTCCTCCACCACCTCCTCAATAAGA
ACATACAGCACGCGCCCCCCCTTCCCCCGCCCTCCCGGTGGTGGTGGAGG
ACCAGGCCGTCCCCCCTTCCGTCCTGGCGGCCCCCCTCGTCCCGGGGGAG
GAGGCGGTCAACGCAATCGTTGGGGTCCGCCGGAAGTGGATCCAGACAGG
CCACCGATGAATGATGCTCTCTTGAGGCTGGCGCCGAACAACGTCCGTGT
GGTGATATCGAACCCGGAGGAGGGGGACGAGATGGCGGGGGTGATGGCCA
CCAAGGAGGCATTGATGAAAGCCAAGGAGATGGGGCTAGACCTGATCATG
ATCTCCGAGACGGCCGACCCCCCCGTGGTGAAGATCATCGACTACGGCAA
GTTCAAGTACTCGCTGGAGAAGAAGAAGAAGGAGCAGAAGAAGAAGGCCA
AGACGACGGAGGTTAAGGAGGTGAAGATGTCGTACAAGATCGAGACGCAC
GACTATGGGGTGCGCATGAAGCAGATGACCCGATTCTTGGAGGAGGGGGA
CAAAGTTAAGGTGATGGTTCAATTCCGTGGTCGTGAGCAGCAGCACATTG
ACCTGGGCCACGAGCTGCTCGGGAAGATTAAGGTGGATTTTGTGGAGCTG
GCGGTGCAGGAGGGGGACGTACGGAGGGAGGGAGGGAGGTTGATTGCCAT
GTTCAAGCCGAAGAAGACGATTTAA
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Synonyms
Publications