NO23G01730, NO23G01730 (gene) Nannochloropsis oceanica

Overview
NameNO23G01730
Unique NameNO23G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1071
Alignment locationchr23:633743..634813 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:633743..634813 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G01730 vs. NCBI_GenBank
Match: EWM27774.1 (hypothetical protein Naga_100187g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-15
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 0 
Query:   19 PSPCSASLSQPQQPQQQ--PAKVILLLHPHKESHGLLQKLKHYADLVKLANIETADAIISCRNRTFSLHLLTPHDISQPALIAKS 102
            PS    S    QQP+QQ    KVILLLH  K++HGLLQKLK +ADLVK  N+ET+DA++SCRNRT SL LLT ++++ P+L AK+
Sbjct:   14 PSLPPTSQGPRQQPEQQIPKPKVILLLHSDKQNHGLLQKLKRHADLVKFTNLETSDAVVSCRNRTLSLLLLTLNEMNNPSLFAKT 98
The following BLAST results are available for this feature:
BLAST of NO23G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27774.11.600e-1557.65hypothetical protein Naga_100187g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR124ngnoR124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010480NSK010480Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01730.1NO23G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100187g2gene2789Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01730.1NO23G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01730 ID=NO23G01730|Name=NO23G01730|organism=Nannochloropsis oceanica|type=gene|length=1071bp
ATGGCCTCTTCCTCCTTCACCGCCCGGCTGGAAGCAACACCTAATGTTCC
TCTTCCTTCTCCTTGTTCCGCCAGTTTATCGCAGCCGCAGCAGCCGCAAC
AACAGCCAGCCAAGGTCATCCTCCTTCTGCACCCTCATAAAGAGAGCCAT
GGTCTACTCCAAAAACTTAAACATTACGCTGACCTCGTCAAACTTGCCAA
CATTGAAACCGCCGACGCCATgtatgtacccgggttgatgaaggcatggt
aaatcatccctcctcctcctcctcctcctcctcctcctcctcctcctcct
cctcctcctcctcctcctccattggtttatcatcataatttcctcaatcg
tgggtatttaaattttatcttctcctgactccttccaacccaacgctttc
ctttacttcattttaatcacagCATCTCCTGCCGCAACCGCACCTTCTCC
CTTCACCTTCTCACCCCGCACGATATCAGCCAGCCAGCGCTTATTGCCAA
Ggtgcgtaccgactcttaatggattacagtcaatggtgaccttttcggta
aaagagaatcctccggagaagacatgcattgttatgcgctcactgacgct
atgcctccttccatcttactgtccctccttctctccctgtctacctgaga
ctcttacccgcctttccaccttccagtccaaatcctcccggcatcctatc
gccgtcctcatctcttccactcgtgatcgaacccctccagggtggttcgc
tcttcaagagcagctccctccctcccgccccctgaacttcctcctggcca
acagTCTGGAGGATGCATACCAGGAGGTGGTGAAAGTCATGAATGTTTTG
AAAGAGCACCAGAAGCAGTGGAAGAAGTGGGAAGGACATTGTTTAGGGAT
AAGATGGGGGTGGAAGACGAGAAGGAGCTGTGGCGCGTACTGGCGATGTA
CGGGTACTTGGGCCGGGTGGGGAGGGCGACGAGGGAGGGGGTGCTGGACG
AATGCCCGATTGAGAGGGAGACTGGACAGCGGCTGGTGGAGTTTTTGGAT
GGTCTTGGCACACAGGAATAG
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protein sequence of NO23G01730.1

>NO23G01730.1-protein ID=NO23G01730.1-protein|Name=NO23G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MASSSFTARLEATPNVPLPSPCSASLSQPQQPQQQPAKVILLLHPHKESH
GLLQKLKHYADLVKLANIETADAIISCRNRTFSLHLLTPHDISQPALIAK
SGGCIPGGGESHECFERAPEAVEEVGRTLFRDKMGVEDEKELWRVLAMYG
YLGRVGRATREGVLDECPIERETGQRLVEFLDGLGTQE*
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Synonyms
Publications