NO23G01730.1, NO23G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01730.1
Unique NameNO23G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr23:633743..634813 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:633743..634813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01730.1 vs.
Match: EWM27774.1 (hypothetical protein Naga_100187g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-15
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 0 
Query:   19 PSPCSASLSQPQQPQQQ--PAKVILLLHPHKESHGLLQKLKHYADLVKLANIETADAIISCRNRTFSLHLLTPHDISQPALIAKS 102
            PS    S    QQP+QQ    KVILLLH  K++HGLLQKLK +ADLVK  N+ET+DA++SCRNRT SL LLT ++++ P+L AK+
Sbjct:   14 PSLPPTSQGPRQQPEQQIPKPKVILLLHSDKQNHGLLQKLKRHADLVKFTNLETSDAVVSCRNRTLSLLLLTLNEMNNPSLFAKT 98
The following BLAST results are available for this feature:
BLAST of NO23G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27774.11.600e-1557.65hypothetical protein Naga_100187g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01730NO23G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01730.1NO23G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01730.1.cds1NO23G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01730.1.cds2NO23G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01730.1.cds3NO23G01730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01730.1 ID=NO23G01730.1|Name=NO23G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
ATGGCCTCTTCCTCCTTCACCGCCCGGCTGGAAGCAACACCTAATGTTCC
TCTTCCTTCTCCTTGTTCCGCCAGTTTATCGCAGCCGCAGCAGCCGCAAC
AACAGCCAGCCAAGGTCATCCTCCTTCTGCACCCTCATAAAGAGAGCCAT
GGTCTACTCCAAAAACTTAAACATTACGCTGACCTCGTCAAACTTGCCAA
CATTGAAACCGCCGACGCCATCATCTCCTGCCGCAACCGCACCTTCTCCC
TTCACCTTCTCACCCCGCACGATATCAGCCAGCCAGCGCTTATTGCCAAG
TCTGGAGGATGCATACCAGGAGGTGGTGAAAGTCATGAATGTTTTGAAAG
AGCACCAGAAGCAGTGGAAGAAGTGGGAAGGACATTGTTTAGGGATAAGA
TGGGGGTGGAAGACGAGAAGGAGCTGTGGCGCGTACTGGCGATGTACGGG
TACTTGGGCCGGGTGGGGAGGGCGACGAGGGAGGGGGTGCTGGACGAATG
CCCGATTGAGAGGGAGACTGGACAGCGGCTGGTGGAGTTTTTGGATGGTC
TTGGCACACAGGAATAG
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protein sequence of NO23G01730.1

>NO23G01730.1-protein ID=NO23G01730.1-protein|Name=NO23G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MASSSFTARLEATPNVPLPSPCSASLSQPQQPQQQPAKVILLLHPHKESH
GLLQKLKHYADLVKLANIETADAIISCRNRTFSLHLLTPHDISQPALIAK
SGGCIPGGGESHECFERAPEAVEEVGRTLFRDKMGVEDEKELWRVLAMYG
YLGRVGRATREGVLDECPIERETGQRLVEFLDGLGTQE*
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mRNA from alignment at chr23:633743..634813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01730.1 ID=NO23G01730.1|Name=NO23G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp|location=Sequence derived from alignment at chr23:633743..634813- (Nannochloropsis oceanica)
ATGGCCTCTTCCTCCTTCACCGCCCGGCTGGAAGCAACACCTAATGTTCC
TCTTCCTTCTCCTTGTTCCGCCAGTTTATCGCAGCCGCAGCAGCCGCAAC
AACAGCCAGCCAAGGTCATCCTCCTTCTGCACCCTCATAAAGAGAGCCAT
GGTCTACTCCAAAAACTTAAACATTACGCTGACCTCGTCAAACTTGCCAA
CATTGAAACCGCCGACGCCATGTATGTACCCGGGTTGATGAAGGCATGGT
AAATCATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCATTGGTTTATCATCATAATTTCCTCAATCG
TGGGTATTTAAATTTTATCTTCTCCTGACTCCTTCCAACCCAACGCTTTC
CTTTACTTCATTTTAATCACAGCATCTCCTGCCGCAACCGCACCTTCTCC
CTTCACCTTCTCACCCCGCACGATATCAGCCAGCCAGCGCTTATTGCCAA
GGTGCGTACCGACTCTTAATGGATTACAGTCAATGGTGACCTTTTCGGTA
AAAGAGAATCCTCCGGAGAAGACATGCATTGTTATGCGCTCACTGACGCT
ATGCCTCCTTCCATCTTACTGTCCCTCCTTCTCTCCCTGTCTACCTGAGA
CTCTTACCCGCCTTTCCACCTTCCAGTCCAAATCCTCCCGGCATCCTATC
GCCGTCCTCATCTCTTCCACTCGTGATCGAACCCCTCCAGGGTGGTTCGC
TCTTCAAGAGCAGCTCCCTCCCTCCCGCCCCCTGAACTTCCTCCTGGCCA
ACAGTCTGGAGGATGCATACCAGGAGGTGGTGAAAGTCATGAATGTTTTG
AAAGAGCACCAGAAGCAGTGGAAGAAGTGGGAAGGACATTGTTTAGGGAT
AAGATGGGGGTGGAAGACGAGAAGGAGCTGTGGCGCGTACTGGCGATGTA
CGGGTACTTGGGCCGGGTGGGGAGGGCGACGAGGGAGGGGGTGCTGGACG
AATGCCCGATTGAGAGGGAGACTGGACAGCGGCTGGTGGAGTTTTTGGAT
GGTCTTGGCACACAGGAATAG
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Coding sequence (CDS) from alignment at chr23:633743..634813-

>NO23G01730.1 ID=NO23G01730.1|Name=NO23G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at chr23:633743..634813- (Nannochloropsis oceanica)
ATGGCCTCTTCCTCCTTCACCGCCCGGCTGGAAGCAACACCTAATGTTCC
TCTTCCTTCTCCTTGTTCCGCCAGTTTATCGCAGCCGCAGCAGCCGCAAC
AACAGCCAGCCAAGGTCATCCTCCTTCTGCACCCTCATAAAGAGAGCCAT
GGTCTACTCCAAAAACTTAAACATTACGCTGACCTCGTCAAACTTGCCAA
CATTGAAACCGCCGACGCCATCATCTCCTGCCGCAACCGCACCTTCTCCC
TTCACCTTCTCACCCCGCACGATATCAGCCAGCCAGCGCTTATTGCCAAG
TCTGGAGGATGCATACCAGGAGGTGGTGAAAGTCATGAATGTTTTGAAAG
AGCACCAGAAGCAGTGGAAGAAGTGGGAAGGACATTGTTTAGGGATAAGA
TGGGGGTGGAAGACGAGAAGGAGCTGTGGCGCGTACTGGCGATGTACGGG
TACTTGGGCCGGGTGGGGAGGGCGACGAGGGAGGGGGTGCTGGACGAATG
CCCGATTGAGAGGGAGACTGGACAGCGGCTGGTGGAGTTTTTGGATGGTC
TTGGCACACAGGAATAG
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Synonyms
Publications