NO23G01690, NO23G01690 (gene) Nannochloropsis oceanica

Overview
NameNO23G01690
Unique NameNO23G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2701
Alignment locationchr23:618737..621437 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:618737..621437 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G01690 vs. NCBI_GenBank
Match: EWM27794.1 (hypothetical protein Naga_100324g1 [Nannochloropsis gaditana])

HSP 1 Score: 652.9 bits (1683), Expect = 9.200e-184
Identity = 349/580 (60.17%), Postives = 396/580 (68.28%), Query Frame = 0 
Query:    1 MKPVS-PNQRMRVETSTATAVPEQRAIVVVGAFPCGLGISKSLVLFTAVLVTSAFFLLRYPPTPSSLTPLLRPPHSSSPPPIDPSLYSNFTSYLILQTGHEEWVSFDRSSAPSFFTPQELATLPPPSTXXXXXXXXXLPRSSCEETGLPPHCCLGSFSLAGLMVWDSVACANANFLKAQVPHASSSXXXXXXXXXXXXXGRFRDMGDVLRRLGNRTLTVWGDSIASQHAHAMECSWLRSGKAKTLAYEKQDFDRIFRKKEDGGGFNRAGGYGTNALYSWHTQLVPQAGGR-EGGREEEE--VEGTMKLYLTYRPLLNESGPVIEEADVLVVNFGLHYLIDKRHVFQEEMCALLKRLRDFGKTEGKQLVWRETSAQHHFNEGGEFPLTIDPERFGVPRKDYKATMDRCFPIHFGPYIHPQWRDKLFLALAREEGWDVRFLGEYD-------EGEEGGEGVTAERRPRRRRGADTACGARGKSEGAKAAAVVGVD-GGMSMHEEEVERDGRGGEGKKPVLYWMPFYRITSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLVDGLGRAVEEGAEEGRECQEGE 569
            MKP S PNQRMR+ET   T   E     +VGA+PCGLGI KSL+LFT VL+ SA F+                         D SLY+NFT+ LIL   HE+WVSF+RS+AP FFT QEL TLPPP +         LP SSC ++GLP HCCLG+FSLAGLMVWDS+ACANANFL  Q+PH S S             GR+RDMGDVL  LGNRTLT+WGDS+ASQHAHAMECSWLRSGKA+T+ YEK DF+RIF+KKE+GGGFNRAG YGTNALY+W T+L  + G   EGG+E EE  VEGTMKLYLTYRPLLNES  ++ EADVLVVNFGLHYLIDKR  ++ EM  +L+ L  FG+ E K+L+WRETSAQHHFNEGGEFPLTIDPERFGV RKDY ATM+RCFPIHFGPYIHPQWRDKL LALA EEGW+VRFL  YD         EE G G+   R P                       V G+                       PVLYW+PFYR+TSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLV+GL  AVE   EEGR   +G+
Sbjct:    1 MKPSSPPNQRMRIETGLGTPDREHGGSGIVGAWPCGLGIRKSLLLFTGVLLISAVFI------XXXXXXXXXXXXXXXXXXXDTSLYTNFTTALILPEPHEDWVSFERSAAPRFFTHQELYTLPPPPS----SPSSSLPASSCVDSGLPSHCCLGAFSLAGLMVWDSIACANANFLSYQLPHTSPS-LPSSTSPGASGLGRYRDMGDVLGGLGNRTLTIWGDSVASQHAHAMECSWLRSGKAETVRYEKLDFNRIFKKKEEGGGFNRAGTYGTNALYTWQTRLRARGGSEGEGGKEVEEKGVEGTMKLYLTYRPLLNESAGLLAEADVLVVNFGLHYLIDKREEYKLEMREMLRALAPFGRNEQKRLIWRETSAQHHFNEGGEFPLTIDPERFGVSRKDYVATMNRCFPIHFGPYIHPQWRDKLLLALAAEEGWEVRFLDGYDGRGGDEFGREEEGGGMAEPRGPXXXXXXXXXXXXXXXXXVEDVRYVEGMRMXXXXXXXXXXXXXXXXXXXXXPVLYWLPFYRLTSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLVEGLAEAVE---EEGRGGCDGK 566
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BLAST of NO23G01690 vs. NCBI_GenBank
Match: XP_005853678.1 (hypothetical protein NGA_0474400 [Nannochloropsis gaditana CCMP526] >EKU22682.1 hypothetical protein NGA_0474400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 530.8 bits (1366), Expect = 5.300e-147
Identity = 277/433 (63.97%), Postives = 314/433 (72.52%), Query Frame = 0 
Query:   33 PCGLGISKSLVLFTAVLVTSAFFLLRYPPTPSSLTPLLRPPHSSSPPPIDPSLYSNFTSYLILQTGHEEWVSFDRSSAPSFFTPQELATLPPPSTXXXXXXXXXLPRSSCEETGLPPHCCLGSFSLAGLMVWDSVACANANFLKAQVPHASSSXXXXXXXXXXXXXGRFRDMGDVLRRLGNRTLTVWGDSIASQHAHAMECSWLRSGKAKTLAYEKQDFDRIFRKKEDGGGFNRAGGYGTNALYSWHTQLVPQAGGR-EGGREEEE--VEGTMKLYLTYRPLLNESGPVIEEADVLVVNFGLHYLIDKRHVFQEEMCALLKRLRDFGKTEGKQLVWRETSAQHHFNEGGEFPLTIDPERFGVPRKDYKATMDRCFPIHFGPYIHPQWRDKLFLALAREEGWDVRFLGEYD-------EGEEGGEGVTAERRPR 456
            P GLGI KSL+LFT VL+ SA                            D SLY+NFT+ LIL   HE+WVSF+RS+AP FFT QEL TLPPP +         LP SSC ++GLP HCCLG+FSLAGLMVWDS+ACANANFL  Q+PH S S             GR+RDMGDVL  LGNRTLT+WGDS+ASQHAHAMECSWLRSGKA+T+ YEK DF+RIF+KKE+GGGFNRAG YGTNALY+W T+L  + G   EGG+E EE  VEGTMKLYLTYRPLLNES  ++ EADVLVVNFGLHYLIDKR  ++ EM  +L+ L  FG+ E K+L+WRETSAQHHFNEGGEFPLTIDPERFGV RKDY ATM+RCFPIHFGPYIHPQWRDKL LALA EEGW+VRFL  YD         EE G G+   R PR
Sbjct:   10 PGGLGIRKSLLLFTGVLLISAV------XXXXXXXXXXXXXXXXXXXXXDTSLYTNFTTALILPEPHEDWVSFERSAAPRFFTHQELYTLPPPPS----SPSSSLPASSCVDSGLPSHCCLGAFSLAGLMVWDSIACANANFLSYQLPHTSPS-LPSSTSPGASGLGRYRDMGDVLGGLGNRTLTIWGDSVASQHAHAMECSWLRSGKAETVRYEKLDFNRIFKKKEEGGGFNRAGTYGTNALYTWQTRLRARGGSEGEGGKEVEEKGVEGTMKLYLTYRPLLNESAGLLAEADVLVVNFGLHYLIDKREEYKLEMREMLRALAPFGRNEQKRLIWRETSAQHHFNEGGEFPLTIDPERFGVSRKDYVATMNRCFPIHFGPYIHPQWRDKLLLALAAEEGWEVRFLDGYDGRGGDEFGREEEGGGMAEPRGPR 431
The following BLAST results are available for this feature:
BLAST of NO23G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27794.19.200e-18460.17hypothetical protein Naga_100324g1 [Nannochloropsi... [more]
XP_005853678.15.300e-14763.97hypothetical protein NGA_0474400 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR124ngnoR124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01690.1NO23G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608585gene_10021Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100324g1gene2768Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01690.1NO23G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01690 ID=NO23G01690|Name=NO23G01690|organism=Nannochloropsis oceanica|type=gene|length=2701bp
AGCTTGCACACAGGCTTTAGCTGCGGTCCGAAGCTGCCCGAGGTCCTTGG
CCTTCTGGTCGCGAGCGGGACGGAGAAGGGGCTCGTTCCACCGCCGTGGG
GCTCGCACATTCTCACCACACCCGCTGGGTACACCTAAAACACAAATGAA
GCCGGTGTCTCCAAACCAACGAATGAGAGTAGAAACGAGCACGGCCACGG
CGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGGCGCCTTCCCATGgtac
gtttggccgaccgggaggggaaggaggagggagtggagggagaatgccag
caaatgtcacagaatctctaaacccaggatcaaacccgaggtggatggaa
atagatttttctgtcaaattcgagggggttgccgatcgcttgtgccagct
ctggatgtacaaataaatgagtgaaaaggccatttgcgtctcttttcccc
ttgtctagtgctagtcttttcgccctcacctcaagacttaacaacaatgt
gaaaacgacaacctgcatggaaaaaagattctgctccacttcttctcgat
ccttctatacatgctgttggaaatgctaaacatttcatgcttgtgagctt
atgaacatcgcctgtcttcttcatcctctttctgacccaacatttccctc
ccgttctctaccctcccccccatccatatttcacgcacacattcaaatac
gcagTGGCCTTGGCATCAGCAAGTCTCTCGTGCTCTTCACCGCCGTGCTT
GTTACCTCCGCCTTCTTCCTCCTTCGGTACCCACCCACCCCCTCCTCCCT
CACCCCTCTCCTCCGCCCCCCCCACTCCTCGTCCCCCCCTCCCATCGACC
CCTCCCTCTACTCCAATTTTACGTCCTATCTCATCCTCCAAACTGGCCAT
GAGGAATGGGTCTCTTTCGATCGCTCCTCCGCCCCGAGCTTCTTCACACC
CCAAGAACTTGCAACCCTTCCCCCTCCCTCAACCCCTCCCTCCACCCCGA
CCTCGCCCTCCCTCCCTCGTTCCTCCTGCGAGGAGACCGGCCTCCCTCCC
CACTGCTGCCTTGGATCCTTTTCTCTCGCGGGTCTGATGGTTTGGGACAG
TGTCGCCTGCGCCAATGCCAATTTTCTCAAAGCTCAGGTGCCCCACGCCT
CGTCCTCCTCCCCTTCCTCGTCCTCCTCCCCTTCCTCGTCCTCACTGGGG
CGGTTTCGGGATATGGGTGACGTCTTACGGCGACTGGGCAATCGGACATT
AACTGTGTGGGGTGACTCTATAGCCAGCCAGCATGCACATGgtaagggag
agggaagggaagggggagggggagaaggagggggtgttttgtcaagactc
gttgttcaccacctccctccctcccgcccttcttcccagCAATGGAGTGC
TCCTGGCTCCGGTCGGGCAAAGCCAAGACACTAGCTTACGAGAAACAAGA
CTTCGACCGCATCTTTCGAAAGAAGGAGGACGGTGGGGGCTTCAATCGTG
CGGGAGGCTACGGCACCAACGCCCTCTACAGCTGGCACACACAGCTTGTG
CCACAGGCAGGCGGGCGGGAGGGAGGGAGGGAGGAAGAAGAAGTGGAGGG
GACGATGAAGTTGTATCTAACTTACCGGCCGTTACTGAATGAAAGCGGAC
CCGTGATAGAGGAGGCAGATGTCCTCGTGGTGAATTTTGGTCTGCACTAC
CTGATCGACAAACGGCACGTCTTCCAGGAGGAGATGTGTGCGCTTCTCAA
GAGGCTCCGAGATTTTGGGAAGACGGAGGGGAAGCAGCTGGTTTGGCGTG
AGgtcggtttctttttcctcccttttttctcccttccccccaccccgccg
ctgctttaaaacccgaaaagccatgaaagtacaccatgcctctcgttaat
tccttaaatcccacacatagaaacatacatatacatacatatatacacac
acatacacacacgcatacagACGTCTGCCCAGCACCACTTCAACGAAGGC
GGCGAGTTTCCTCTCACCATCGACCCTGAGCGTTTCGGCGTTCCTCGCAA
GGACTACAAGGCAACGATGGATAGATGTTTCCCCATCCATTTTGGACCCT
ACATCCATCCTCAATGGCGGGACAAGCTGTTTCTGGCCTTGGCAAGGGAG
GAAGGGTGGGACGTACGGTTTTTGGGGGAGTATGATGAGGGGGAAGAGGG
AGGGGAGGGAGTAACCGCCGAGAGGCGGCCGCGGCGACGACGAGGGGCGG
ACACTGCGTGTGGGGCTCGGGGAAAGAGCGAGGGGGCAAAGGCAGCGGCA
GTGGTAGGAGTGGATGGGGGAATGAGCATGCATGAGGAGGAAGTGGAGAG
GGACGGAAGGGGGGGAGAAGGGAAGAAGCCGGTGTTGTATTGGATGCCTT
TTTACCGCATCACGAGCGAGAGGTTGGACTTGCATCCGTACAATGAATGG
AAGGGGAAGTATGACTGTACTCATTATTGCTACACCCCCTTTCTGTGGGA
CCCTTTGGTGGATGGATTGGGAAGGGCGGTGGAGGAGGGGGCGGAGGAGG
GGAGAGAGTGTCAGGAGGGAGAGGGAGTGGGAGGATAATAGGAGGGAGGG
GGAAAGGGAAACTCTGCAGTGATGTATAAATGTAGGTGTTTCTGTATAAA
GCTATGCGAACGGGTAAAAATGAAAGAACGATTGTGATGCTTGTACGAAT
T
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protein sequence of NO23G01690.1

>NO23G01690.1-protein ID=NO23G01690.1-protein|Name=NO23G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MKPVSPNQRMRVETSTATAVPEQRAIVVVGAFPCGLGISKSLVLFTAVLV
TSAFFLLRYPPTPSSLTPLLRPPHSSSPPPIDPSLYSNFTSYLILQTGHE
EWVSFDRSSAPSFFTPQELATLPPPSTPPSTPTSPSLPRSSCEETGLPPH
CCLGSFSLAGLMVWDSVACANANFLKAQVPHASSSSPSSSSSPSSSSLGR
FRDMGDVLRRLGNRTLTVWGDSIASQHAHAMECSWLRSGKAKTLAYEKQD
FDRIFRKKEDGGGFNRAGGYGTNALYSWHTQLVPQAGGREGGREEEEVEG
TMKLYLTYRPLLNESGPVIEEADVLVVNFGLHYLIDKRHVFQEEMCALLK
RLRDFGKTEGKQLVWRETSAQHHFNEGGEFPLTIDPERFGVPRKDYKATM
DRCFPIHFGPYIHPQWRDKLFLALAREEGWDVRFLGEYDEGEEGGEGVTA
ERRPRRRRGADTACGARGKSEGAKAAAVVGVDGGMSMHEEEVERDGRGGE
GKKPVLYWMPFYRITSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLVDGL
GRAVEEGAEEGRECQEGEGVGG*
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Synonyms
Publications