NO23G01690.1, NO23G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01690.1
Unique NameNO23G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1977
Alignment locationchr23:618737..621437 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:618737..621437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01690.1 vs.
Match: EWM27794.1 (hypothetical protein Naga_100324g1 [Nannochloropsis gaditana])

HSP 1 Score: 730.7 bits (1885), Expect = 3.500e-207
Identity = 388/581 (66.78%), Postives = 444/581 (76.42%), Query Frame = 0 
Query:    1 MKPVSP-NQRMRVETSTATAVPEQRAIVVVGAFPCGLGISKSLVLFTAVLVTSAFFLLRYPPTPSSLTPLLRPPHSSSPPPIDPSLYSNFTSYLILQTGHEEWVSFDRSSAPSFFTPQELATLPPPSTPPSTPTSPSLPRSSCEETGLPPHCCLGSFSLAGLMVWDSVACANANFLKAQVPHASSSSPSSSSSPSSSSLGRFRDMGDVLRRLGNRTLTVWGDSIASQHAHAMECSWLRSGKAKTLAYEKQDFDRIFRKKEDGGGFNRAGGYGTNALYSWHTQLVPQAGGR-EGGREEEE--VEGTMKLYLTYRPLLNESGPVIEEADVLVVNFGLHYLIDKRHVFQEEMCALLKRLRDFGKTEGKQLVWRETSAQHHFNEGGEFPLTIDPERFGVPRKDYKATMDRCFPIHFGPYIHPQWRDKLFLALAREEGWDVRFLGEYD-------EGEEGGEGVTAERRPRRRRGADTACGARGKS--EGAKAAAVVGVDGGMSMHEEEVERDGRGGEGKKPVLYWMPFYRITSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLVDGLGRAVEEGAEEGRECQEGE 569
            MKP SP NQRMR+ET   T   E     +VGA+PCGLGI KSL+LFT VL+ SA F+L    TP SL PLLRPP    PPP+D SLY+NFT+ LIL   HE+WVSF+RS+AP FFT QEL TLPPP   PS+P+S SLP SSC ++GLP HCCLG+FSLAGLMVWDS+ACANANFL  Q+PH S S PSS+S P +S LGR+RDMGDVL  LGNRTLT+WGDS+ASQHAHAMECSWLRSGKA+T+ YEK DF+RIF+KKE+GGGFNRAG YGTNALY+W T+L  + G   EGG+E EE  VEGTMKLYLTYRPLLNES  ++ EADVLVVNFGLHYLIDKR  ++ EM  +L+ L  FG+ E K+L+WRETSAQHHFNEGGEFPLTIDPERFGV RKDY ATM+RCFPIHFGPYIHPQWRDKL LALA EEGW+VRFL  YD         EE G G+   R PRR +G    CG +  S  E  +    + + GG     E     GR G G+KPVLYW+PFYR+TSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLV+GL  AVE   EEGR   +G+
Sbjct:    1 MKPSSPPNQRMRIETGLGTPDREHGGSGIVGAWPCGLGIRKSLLLFTGVLLISAVFILN--STPPSL-PLLRPP---PPPPVDTSLYTNFTTALILPEPHEDWVSFERSAAPRFFTHQELYTLPPP---PSSPSS-SLPASSCVDSGLPSHCCLGAFSLAGLMVWDSIACANANFLSYQLPHTSPSLPSSTS-PGASGLGRYRDMGDVLGGLGNRTLTIWGDSVASQHAHAMECSWLRSGKAETVRYEKLDFNRIFKKKEEGGGFNRAGTYGTNALYTWQTRLRARGGSEGEGGKEVEEKGVEGTMKLYLTYRPLLNESAGLLAEADVLVVNFGLHYLIDKREEYKLEMREMLRALAPFGRNEQKRLIWRETSAQHHFNEGGEFPLTIDPERFGVSRKDYVATMNRCFPIHFGPYIHPQWRDKLLLALAAEEGWEVRFLDGYDGRGGDEFGREEEGGGMAEPRGPRRGQGRGQGCGEKEGSGVEDVRYVEGMRMGGGRGGGREGGREGGREG-GRKPVLYWLPFYRLTSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLVEGLAEAVE---EEGRGGCDGK 566
The following BLAST results are available for this feature:
BLAST of NO23G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27794.13.500e-20766.78hypothetical protein Naga_100324g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01690NO23G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01690.1NO23G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01690.1.cds1NO23G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01690.1.cds2NO23G01690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01690.1.cds3NO23G01690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01690.1.cds4NO23G01690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01690.1 ID=NO23G01690.1|Name=NO23G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1977bp
AGCTTGCACACAGGCTTTAGCTGCGGTCCGAAGCTGCCCGAGGTCCTTGG
CCTTCTGGTCGCGAGCGGGACGGAGAAGGGGCTCGTTCCACCGCCGTGGG
GCTCGCACATTCTCACCACACCCGCTGGGTACACCTAAAACACAAATGAA
GCCGGTGTCTCCAAACCAACGAATGAGAGTAGAAACGAGCACGGCCACGG
CGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGGCGCCTTCCCATGTGGC
CTTGGCATCAGCAAGTCTCTCGTGCTCTTCACCGCCGTGCTTGTTACCTC
CGCCTTCTTCCTCCTTCGGTACCCACCCACCCCCTCCTCCCTCACCCCTC
TCCTCCGCCCCCCCCACTCCTCGTCCCCCCCTCCCATCGACCCCTCCCTC
TACTCCAATTTTACGTCCTATCTCATCCTCCAAACTGGCCATGAGGAATG
GGTCTCTTTCGATCGCTCCTCCGCCCCGAGCTTCTTCACACCCCAAGAAC
TTGCAACCCTTCCCCCTCCCTCAACCCCTCCCTCCACCCCGACCTCGCCC
TCCCTCCCTCGTTCCTCCTGCGAGGAGACCGGCCTCCCTCCCCACTGCTG
CCTTGGATCCTTTTCTCTCGCGGGTCTGATGGTTTGGGACAGTGTCGCCT
GCGCCAATGCCAATTTTCTCAAAGCTCAGGTGCCCCACGCCTCGTCCTCC
TCCCCTTCCTCGTCCTCCTCCCCTTCCTCGTCCTCACTGGGGCGGTTTCG
GGATATGGGTGACGTCTTACGGCGACTGGGCAATCGGACATTAACTGTGT
GGGGTGACTCTATAGCCAGCCAGCATGCACATGCAATGGAGTGCTCCTGG
CTCCGGTCGGGCAAAGCCAAGACACTAGCTTACGAGAAACAAGACTTCGA
CCGCATCTTTCGAAAGAAGGAGGACGGTGGGGGCTTCAATCGTGCGGGAG
GCTACGGCACCAACGCCCTCTACAGCTGGCACACACAGCTTGTGCCACAG
GCAGGCGGGCGGGAGGGAGGGAGGGAGGAAGAAGAAGTGGAGGGGACGAT
GAAGTTGTATCTAACTTACCGGCCGTTACTGAATGAAAGCGGACCCGTGA
TAGAGGAGGCAGATGTCCTCGTGGTGAATTTTGGTCTGCACTACCTGATC
GACAAACGGCACGTCTTCCAGGAGGAGATGTGTGCGCTTCTCAAGAGGCT
CCGAGATTTTGGGAAGACGGAGGGGAAGCAGCTGGTTTGGCGTGAGACGT
CTGCCCAGCACCACTTCAACGAAGGCGGCGAGTTTCCTCTCACCATCGAC
CCTGAGCGTTTCGGCGTTCCTCGCAAGGACTACAAGGCAACGATGGATAG
ATGTTTCCCCATCCATTTTGGACCCTACATCCATCCTCAATGGCGGGACA
AGCTGTTTCTGGCCTTGGCAAGGGAGGAAGGGTGGGACGTACGGTTTTTG
GGGGAGTATGATGAGGGGGAAGAGGGAGGGGAGGGAGTAACCGCCGAGAG
GCGGCCGCGGCGACGACGAGGGGCGGACACTGCGTGTGGGGCTCGGGGAA
AGAGCGAGGGGGCAAAGGCAGCGGCAGTGGTAGGAGTGGATGGGGGAATG
AGCATGCATGAGGAGGAAGTGGAGAGGGACGGAAGGGGGGGAGAAGGGAA
GAAGCCGGTGTTGTATTGGATGCCTTTTTACCGCATCACGAGCGAGAGGT
TGGACTTGCATCCGTACAATGAATGGAAGGGGAAGTATGACTGTACTCAT
TATTGCTACACCCCCTTTCTGTGGGACCCTTTGGTGGATGGATTGGGAAG
GGCGGTGGAGGAGGGGGCGGAGGAGGGGAGAGAGTGTCAGGAGGGAGAGG
GAGTGGGAGGATAATAGGAGGGAGGGGGAAAGGGAAACTCTGCAGTGATG
TATAAATGTAGGTGTTTCTGTATAAAGCTATGCGAACGGGTAAAAATGAA
AGAACGATTGTGATGCTTGTACGAATT
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protein sequence of NO23G01690.1

>NO23G01690.1-protein ID=NO23G01690.1-protein|Name=NO23G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MKPVSPNQRMRVETSTATAVPEQRAIVVVGAFPCGLGISKSLVLFTAVLV
TSAFFLLRYPPTPSSLTPLLRPPHSSSPPPIDPSLYSNFTSYLILQTGHE
EWVSFDRSSAPSFFTPQELATLPPPSTPPSTPTSPSLPRSSCEETGLPPH
CCLGSFSLAGLMVWDSVACANANFLKAQVPHASSSSPSSSSSPSSSSLGR
FRDMGDVLRRLGNRTLTVWGDSIASQHAHAMECSWLRSGKAKTLAYEKQD
FDRIFRKKEDGGGFNRAGGYGTNALYSWHTQLVPQAGGREGGREEEEVEG
TMKLYLTYRPLLNESGPVIEEADVLVVNFGLHYLIDKRHVFQEEMCALLK
RLRDFGKTEGKQLVWRETSAQHHFNEGGEFPLTIDPERFGVPRKDYKATM
DRCFPIHFGPYIHPQWRDKLFLALAREEGWDVRFLGEYDEGEEGGEGVTA
ERRPRRRRGADTACGARGKSEGAKAAAVVGVDGGMSMHEEEVERDGRGGE
GKKPVLYWMPFYRITSERLDLHPYNEWKGKYDCTHYCYTPFLWDPLVDGL
GRAVEEGAEEGRECQEGEGVGG*
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mRNA from alignment at chr23:618737..621437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01690.1 ID=NO23G01690.1|Name=NO23G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at chr23:618737..621437+ (Nannochloropsis oceanica)
AGCTTGCACACAGGCTTTAGCTGCGGTCCGAAGCTGCCCGAGGTCCTTGG
CCTTCTGGTCGCGAGCGGGACGGAGAAGGGGCTCGTTCCACCGCCGTGGG
GCTCGCACATTCTCACCACACCCGCTGGGTACACCTAAAACACAAATGAA
GCCGGTGTCTCCAAACCAACGAATGAGAGTAGAAACGAGCACGGCCACGG
CGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGGCGCCTTCCCATGGTAC
GTTTGGCCGACCGGGAGGGGAAGGAGGAGGGAGTGGAGGGAGAATGCCAG
CAAATGTCACAGAATCTCTAAACCCAGGATCAAACCCGAGGTGGATGGAA
ATAGATTTTTCTGTCAAATTCGAGGGGGTTGCCGATCGCTTGTGCCAGCT
CTGGATGTACAAATAAATGAGTGAAAAGGCCATTTGCGTCTCTTTTCCCC
TTGTCTAGTGCTAGTCTTTTCGCCCTCACCTCAAGACTTAACAACAATGT
GAAAACGACAACCTGCATGGAAAAAAGATTCTGCTCCACTTCTTCTCGAT
CCTTCTATACATGCTGTTGGAAATGCTAAACATTTCATGCTTGTGAGCTT
ATGAACATCGCCTGTCTTCTTCATCCTCTTTCTGACCCAACATTTCCCTC
CCGTTCTCTACCCTCCCCCCCATCCATATTTCACGCACACATTCAAATAC
GCAGTGGCCTTGGCATCAGCAAGTCTCTCGTGCTCTTCACCGCCGTGCTT
GTTACCTCCGCCTTCTTCCTCCTTCGGTACCCACCCACCCCCTCCTCCCT
CACCCCTCTCCTCCGCCCCCCCCACTCCTCGTCCCCCCCTCCCATCGACC
CCTCCCTCTACTCCAATTTTACGTCCTATCTCATCCTCCAAACTGGCCAT
GAGGAATGGGTCTCTTTCGATCGCTCCTCCGCCCCGAGCTTCTTCACACC
CCAAGAACTTGCAACCCTTCCCCCTCCCTCAACCCCTCCCTCCACCCCGA
CCTCGCCCTCCCTCCCTCGTTCCTCCTGCGAGGAGACCGGCCTCCCTCCC
CACTGCTGCCTTGGATCCTTTTCTCTCGCGGGTCTGATGGTTTGGGACAG
TGTCGCCTGCGCCAATGCCAATTTTCTCAAAGCTCAGGTGCCCCACGCCT
CGTCCTCCTCCCCTTCCTCGTCCTCCTCCCCTTCCTCGTCCTCACTGGGG
CGGTTTCGGGATATGGGTGACGTCTTACGGCGACTGGGCAATCGGACATT
AACTGTGTGGGGTGACTCTATAGCCAGCCAGCATGCACATGGTAAGGGAG
AGGGAAGGGAAGGGGGAGGGGGAGAAGGAGGGGGTGTTTTGTCAAGACTC
GTTGTTCACCACCTCCCTCCCTCCCGCCCTTCTTCCCAGCAATGGAGTGC
TCCTGGCTCCGGTCGGGCAAAGCCAAGACACTAGCTTACGAGAAACAAGA
CTTCGACCGCATCTTTCGAAAGAAGGAGGACGGTGGGGGCTTCAATCGTG
CGGGAGGCTACGGCACCAACGCCCTCTACAGCTGGCACACACAGCTTGTG
CCACAGGCAGGCGGGCGGGAGGGAGGGAGGGAGGAAGAAGAAGTGGAGGG
GACGATGAAGTTGTATCTAACTTACCGGCCGTTACTGAATGAAAGCGGAC
CCGTGATAGAGGAGGCAGATGTCCTCGTGGTGAATTTTGGTCTGCACTAC
CTGATCGACAAACGGCACGTCTTCCAGGAGGAGATGTGTGCGCTTCTCAA
GAGGCTCCGAGATTTTGGGAAGACGGAGGGGAAGCAGCTGGTTTGGCGTG
AGGTCGGTTTCTTTTTCCTCCCTTTTTTCTCCCTTCCCCCCACCCCGCCG
CTGCTTTAAAACCCGAAAAGCCATGAAAGTACACCATGCCTCTCGTTAAT
TCCTTAAATCCCACACATAGAAACATACATATACATACATATATACACAC
ACATACACACACGCATACAGACGTCTGCCCAGCACCACTTCAACGAAGGC
GGCGAGTTTCCTCTCACCATCGACCCTGAGCGTTTCGGCGTTCCTCGCAA
GGACTACAAGGCAACGATGGATAGATGTTTCCCCATCCATTTTGGACCCT
ACATCCATCCTCAATGGCGGGACAAGCTGTTTCTGGCCTTGGCAAGGGAG
GAAGGGTGGGACGTACGGTTTTTGGGGGAGTATGATGAGGGGGAAGAGGG
AGGGGAGGGAGTAACCGCCGAGAGGCGGCCGCGGCGACGACGAGGGGCGG
ACACTGCGTGTGGGGCTCGGGGAAAGAGCGAGGGGGCAAAGGCAGCGGCA
GTGGTAGGAGTGGATGGGGGAATGAGCATGCATGAGGAGGAAGTGGAGAG
GGACGGAAGGGGGGGAGAAGGGAAGAAGCCGGTGTTGTATTGGATGCCTT
TTTACCGCATCACGAGCGAGAGGTTGGACTTGCATCCGTACAATGAATGG
AAGGGGAAGTATGACTGTACTCATTATTGCTACACCCCCTTTCTGTGGGA
CCCTTTGGTGGATGGATTGGGAAGGGCGGTGGAGGAGGGGGCGGAGGAGG
GGAGAGAGTGTCAGGAGGGAGAGGGAGTGGGAGGATAATAGGAGGGAGGG
GGAAAGGGAAACTCTGCAGTGATGTATAAATGTAGGTGTTTCTGTATAAA
GCTATGCGAACGGGTAAAAATGAAAGAACGATTGTGATGCTTGTACGAAT
T
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Coding sequence (CDS) from alignment at chr23:618737..621437+

>NO23G01690.1 ID=NO23G01690.1|Name=NO23G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr23:618737..621437+ (Nannochloropsis oceanica)
ATGAAGCCGGTGTCTCCAAACCAACGAATGAGAGTAGAAACGAGCACGGC
CACGGCGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGGCGCCTTCCCAT
GTGGCCTTGGCATCAGCAAGTCTCTCGTGCTCTTCACCGCCGTGCTTGTT
ACCTCCGCCTTCTTCCTCCTTCGGTACCCACCCACCCCCTCCTCCCTCAC
CCCTCTCCTCCGCCCCCCCCACTCCTCGTCCCCCCCTCCCATCGACCCCT
CCCTCTACTCCAATTTTACGTCCTATCTCATCCTCCAAACTGGCCATGAG
GAATGGGTCTCTTTCGATCGCTCCTCCGCCCCGAGCTTCTTCACACCCCA
AGAACTTGCAACCCTTCCCCCTCCCTCAACCCCTCCCTCCACCCCGACCT
CGCCCTCCCTCCCTCGTTCCTCCTGCGAGGAGACCGGCCTCCCTCCCCAC
TGCTGCCTTGGATCCTTTTCTCTCGCGGGTCTGATGGTTTGGGACAGTGT
CGCCTGCGCCAATGCCAATTTTCTCAAAGCTCAGGTGCCCCACGCCTCGT
CCTCCTCCCCTTCCTCGTCCTCCTCCCCTTCCTCGTCCTCACTGGGGCGG
TTTCGGGATATGGGTGACGTCTTACGGCGACTGGGCAATCGGACATTAAC
TGTGTGGGGTGACTCTATAGCCAGCCAGCATGCACATGCAATGGAGTGCT
CCTGGCTCCGGTCGGGCAAAGCCAAGACACTAGCTTACGAGAAACAAGAC
TTCGACCGCATCTTTCGAAAGAAGGAGGACGGTGGGGGCTTCAATCGTGC
GGGAGGCTACGGCACCAACGCCCTCTACAGCTGGCACACACAGCTTGTGC
CACAGGCAGGCGGGCGGGAGGGAGGGAGGGAGGAAGAAGAAGTGGAGGGG
ACGATGAAGTTGTATCTAACTTACCGGCCGTTACTGAATGAAAGCGGACC
CGTGATAGAGGAGGCAGATGTCCTCGTGGTGAATTTTGGTCTGCACTACC
TGATCGACAAACGGCACGTCTTCCAGGAGGAGATGTGTGCGCTTCTCAAG
AGGCTCCGAGATTTTGGGAAGACGGAGGGGAAGCAGCTGGTTTGGCGTGA
GACGTCTGCCCAGCACCACTTCAACGAAGGCGGCGAGTTTCCTCTCACCA
TCGACCCTGAGCGTTTCGGCGTTCCTCGCAAGGACTACAAGGCAACGATG
GATAGATGTTTCCCCATCCATTTTGGACCCTACATCCATCCTCAATGGCG
GGACAAGCTGTTTCTGGCCTTGGCAAGGGAGGAAGGGTGGGACGTACGGT
TTTTGGGGGAGTATGATGAGGGGGAAGAGGGAGGGGAGGGAGTAACCGCC
GAGAGGCGGCCGCGGCGACGACGAGGGGCGGACACTGCGTGTGGGGCTCG
GGGAAAGAGCGAGGGGGCAAAGGCAGCGGCAGTGGTAGGAGTGGATGGGG
GAATGAGCATGCATGAGGAGGAAGTGGAGAGGGACGGAAGGGGGGGAGAA
GGGAAGAAGCCGGTGTTGTATTGGATGCCTTTTTACCGCATCACGAGCGA
GAGGTTGGACTTGCATCCGTACAATGAATGGAAGGGGAAGTATGACTGTA
CTCATTATTGCTACACCCCCTTTCTGTGGGACCCTTTGGTGGATGGATTG
GGAAGGGCGGTGGAGGAGGGGGCGGAGGAGGGGAGAGAGTGTCAGGAGGG
AGAGGGAGTGGGAGGATAA
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Synonyms
Publications