NO23G01660, NO23G01660 (gene) Nannochloropsis oceanica

Overview
NameNO23G01660
Unique NameNO23G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr23:611984..613266 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:611984..613266 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO23G01660 vs. NCBI_GenBank
Match: EWM27792.1 (hypothetical protein Naga_100324g5 [Nannochloropsis gaditana])

HSP 1 Score: 319.3 bits (817), Expect = 1.000e-83
Identity = 160/226 (70.80%), Postives = 183/226 (80.97%), Query Frame = 0
Query:   23 HAFLLPTTIKRSSRSSSRCTL----------RMSAASSSP---PSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKFDSDAHTAKWKALFDAP-SAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDFVAKM 235
            HAFLLP   +   +S   C             MS+ SSSP   PSEAE  K+FGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKFDSDAHTAKW ALFD P S+P SS+P+SDED+FNTETAGPT L+S  +LAERLSALPF APLGP+V+V  +EPL++ET  WLW+KL+P GSKS  LTARLME+RL+EWA+GKDS+MWGDF+A+M
Sbjct:   20 HAFLLPAITRNMGQSIVFCASLASVDVSSPPSMSSTSSSPASIPSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEM 245          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: XP_005840670.1 (hypothetical protein GUITHDRAFT_100666 [Guillardia theta CCMP2712] >EKX53690.1 hypothetical protein GUITHDRAFT_100666 [Guillardia theta CCMP2712])

HSP 1 Score: 138.7 bits (348), Expect = 2.400e-29
Identity = 80/194 (41.24%), Postives = 108/194 (55.67%), Query Frame = 0
Query:   47 AASSSPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKF-DSDAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGPS-VSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWAS-GKDSMMWGDFVAKMTSE 238
            ++S+    E ELVK+FGRLA+K IF D SAG CCHSGCD+CEWRY FDIM+AARPKW+  Y+E +F D   H AKW  LF            +DE+    +T           L ERL  + F  PLGPS      +  L+ E +   W K+    +    +T + M  RL++ A+ G++ +MW DFVA +  E
Sbjct:    2 SSSTGQVEEVELVKIFGRLAEKMIFGDGSAGACCHSGCDDCEWRYSFDIMQAARPKWIPCYSENRFEDGREHIAKWSKLF------------NDENTITRDT-----------LYERLREMKFEMPLGPSGYMTASQAELKDEALDLFWAKI---SANKDKVTPKQMSIRLRKMATPGEEGVMWSDFVASILHE 169          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: XP_002185919.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65389.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 95.5 bits (236), Expect = 2.400e-16
Identity = 76/234 (32.48%), Postives = 109/234 (46.58%), Query Frame = 0
Query:    8 LIYCI--GTLLFFAFSTHAFLLPTTIKRSSRSSSRCTLRMSAASSSPPS--EAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKW-KALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPL-GPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDF 231
            L++C+  G   F+   TH              S+R ++ + +A +S  +  + E VKVFGRLA+K I +D+SAG CC+S C +CE+R     Y      AARPKW+ +Y ER  +   HT KW + LF      +    L+ E+                    +L AL ++ PL GP V           TVA L++ LV  G     LT   M  RLKE A G++ + W  F
Sbjct:    5 LVFCLFAGATSFYPSLTHI------------QSNRISVHLFSAETSDVAIDQKEAVKVFGRLAEKYIMLDDSAGMCCYSACADCEYRLPGGGYRMADQSAARPKWIPSYTERAANDRQHTTKWSEQLF------VDGPALTKEE-----------------FVTKLKALEYAPPLGGPYVGASAAALDDTSTVAHLFDILVAEGKDK--LTKHRMSVRLKELADGEEGLTWAGF 201          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: KOO26906.1 (hypothetical protein Ctob_004425 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-14
Identity = 71/244 (29.10%), Postives = 109/244 (44.67%), Query Frame = 0
Query:    4 PSYSLIYCIGTLLFFAFSTHAFLLPTTIKRSSRSSSRCTLRMSAASSSPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWA------------SGKDSMMWGDF 231
            PS  L+  +   L    +    LLP           RC   ++ A S+  S  +  K+FGRLA+K +++D + G CCHS C +CEWR     Y +D+M+A   KWL  Y  R F             D P  P +++ +S  D F+T                RLSA+P+S  +GP  +V  E  L A+ +  +W  L    ++   L+A  M +RL+  +             G DS++W +F
Sbjct:    2 PSLLLLQSVALALSLGPTARPALLP----------RRCPAPIAQAVSTSLSTVDAAKIFGRLAEKTLYLDATVGACCHSACSDCEWRTPGGGYRWDVMKAQVAKWLPCYLTRDF------------ADEPLFPGAAATVSRAD-FDT----------------RLSAMPYSGAMGPKGTVK-EAELPAQALDAIWAFLCDGDAQCAELSASAMLQRLQSMSLLEGIERAGAIGQGPDSIVWNEF 205          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: EJK78004.1 (hypothetical protein THAOC_00121 [Thalassiosira oceanica])

HSP 1 Score: 87.8 bits (216), Expect = 4.900e-14
Identity = 68/208 (32.69%), Postives = 100/208 (48.08%), Query Frame = 0
Query:   31 IKRSSRSSSRCTLRMSAASSSPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDA--HTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPL-GPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDF 231
            ++R++R S       +A  + P    E VK+FGRLA+K I +D SAG CC+S C +CE+R     Y      AARPKW+  Y +R F++    HT KW +                 +IF   T GP          +RL +L F  PL GP ++          + A L++ L  AG K + LT   M K +K+ A+G++ + W  F
Sbjct:   54 LRRTTRLSENAVATPAAIETDP---KEAVKLFGRLAEKYIMLDASAGMCCYSACTDCEYREPGGGYRMADQSAARPKWIPCYEDRNFEAQGKQHTTKWSS-----------------EIF---TDGPVVTKEQ--FVDRLISLEFKPPLGGPYLAASAAAIEDESSAAALFDVL--AGEKEK-LTRFRMGKAMKDLANGEEGLTWAMF 233          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: XP_002286629.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96270.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 87.0 bits (214), Expect = 8.400e-14
Identity = 64/205 (31.22%), Postives = 98/205 (47.80%), Query Frame = 0
Query:   36 RSSSRCTLRMSAASSSPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDS-DAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDFVAKM 235
            +S +  T   +AA  + P EA  VK+FGRLA+K I +D SAG CC+SGC +CE+R     Y      ++RPKW+ +Y  R+F+S   HT KW                      +TE     P  +      R+  + F+ PLG          ++ E+ A     ++ AG K + LT   M K +K  A+G++ + W +F A +
Sbjct:   40 QSEATATADETAAIQTDPKEA--VKLFGRLAEKYIMLDASAGMCCYSGCTDCEFREPGGGYRMADQSSSRPKWIPSYDHREFNSGKEHTTKW----------------------STEIFVDGPAVTKEEFVSRVINMQFAPPLGGPYLAASAATIEDESAAASLFDIL-AGEKEK-LTKHRMGKEMKSLANGEEGLTWANFSAAL 218          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: GAX17167.1 (hypothetical protein FisN_10Lh013 [Fistulifera solaris])

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-13
Identity = 61/209 (29.19%), Postives = 92/209 (44.02%), Query Frame = 0
Query:   27 LPTTIKRSSRSSSRCTLRMSAASSSPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDF 231
            LPT    S + +S   L  +  +++  S  E VK+FGRLA+K I +D SAG CC+S C +CE+R     Y      AARPKW+ +Y  R+ +   H+ KW                      +TE     P  S     E++  L +  PLG             +     + +++  G +   LT   M +RLKE A G++ + W  F
Sbjct:    3 LPTQWNGSQKVASALLLADTNQAAAAVSPKEAVKIFGRLAEKYIMLDSSAGMCCYSACTDCEFRLPGGGYRMADQSAARPKWIPSYETRQANGKEHSTKW----------------------STEIFAEGPAVSMEEFVEKVQQLEYVPPLGGPYVGASSAAFDDDQALQSFFEILSNGKEK--LTRHRMGQRLKELADGEEGLTWAAF 187          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: GAX21435.1 (hypothetical protein FisN_10Hh013 [Fistulifera solaris])

HSP 1 Score: 83.2 bits (204), Expect = 1.200e-12
Identity = 57/201 (28.36%), Postives = 89/201 (44.28%), Query Frame = 0
Query:   35 SRSSSRCTLRMSAASSSPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDF 231
            SR  S   L  ++ +++  S  E VK+FGRLA+K I +D SAG CC+S C +CE+R     Y      AARPKW+ +Y  R+ +   H+ KW                      +T+     P  S     E++  + +  PLG             +     + +++  G +   LT   M +RLKE A G++ + W  F
Sbjct:   30 SRKMSSTLLAETSQAAAAVSPKEAVKIFGRLAEKYIMLDSSAGMCCYSACADCEFRLPGGGYRMADQSAARPKWIPSYETRQANGKEHSTKW----------------------STKIFTEGPAVSMEEFVEKIQQIEYVPPLGGPYVGASSAAFDNDQALQSFFEILSNGKEK--LTRHRMSQRLKELADGEEGLTWAAF 206          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: OEU17611.1 (hypothetical protein FRACYDRAFT_184733 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.0 bits (201), Expect = 2.700e-12
Identity = 63/187 (33.69%), Postives = 88/187 (47.06%), Query Frame = 0
Query:   59 VKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDA--HTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPL-GPSVSVPG---EEPLQAETVAWLWEKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDFVAKM 235
            VK+FGRLA+K I +DES G CC+S C +CE+R     Y      A+RPKW+  Y ER F +    HTAKW+            S + D  +F T+              E +  L F+ PL GP VS      E+P  AE   +L++ L     K   LT   M   L + + G+  + W +F A +
Sbjct:   59 VKLFGRLAEKYIMLDESGGMCCYSACKDCEFRLPGGGYRMADQSASRPKWIPVYEERVFANQGKEHTAKWR------------SSIFDGKLFVTKDE----------FVESILELDFATPLGGPFVSKSAGTLEDPTGAE---YLFDILAEGKEK---LTRHKMHLSLTKLSEGEAGLTWPNFSAAL 217          
BLAST of NO23G01660 vs. NCBI_GenBank
Match: XP_005781105.1 (hypothetical protein EMIHUDRAFT_234836 [Emiliania huxleyi CCMP1516] >EOD28676.1 hypothetical protein EMIHUDRAFT_234836 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.0 bits (188), Expect = 8.700e-11
Identity = 50/193 (25.91%), Postives = 75/193 (38.86%), Query Frame = 0
Query:   52 PPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSD--AHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGPTPLSSAVLLAERLSALPFSAPLGP--SVSVPGEEPLQAETVAWLW-----EKLVPAGSKSRTLTARLMEKRLKEWASGKDSMMWGDF 231
            P     LV     LA+  + +D   G CCHS C +CEWR     Y FD+++A +PKW+  Y  R F  +   H  +W +        ++ +                         E L+ L F  P+GP  SV   G  P  A    W W     + L P G+++R        +       G D ++W +F
Sbjct:    3 PRGRPTLVVPVCSLAEPLVHLDPEVGACCHSACSDCEWRLPDGGYRFDVLKATKPKWVPCYLRRDFGDERGCHEPRWASALFPGGGEVTRAQ----------------------FGEALAGLGFEMPMGPRGSVGADGGVPESAADALWAWLAGDGDALTPEGARTRLQAMAEDPQAEGAVGEGPDHLVWKEF 173          
The following BLAST results are available for this feature:
BLAST of NO23G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM27792.11.000e-8370.80hypothetical protein Naga_100324g5 [Nannochloropsi... [more]
XP_005840670.12.400e-2941.24hypothetical protein GUITHDRAFT_100666 [Guillardia... [more]
XP_002185919.12.400e-1632.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
KOO26906.11.300e-1429.10hypothetical protein Ctob_004425 [Chrysochromulina... [more]
EJK78004.14.900e-1432.69hypothetical protein THAOC_00121 [Thalassiosira oc... [more]
XP_002286629.18.400e-1431.22predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX17167.11.400e-1329.19hypothetical protein FisN_10Lh013 [Fistulifera sol... [more]
GAX21435.11.200e-1228.36hypothetical protein FisN_10Hh013 [Fistulifera sol... [more]
OEU17611.12.700e-1233.69hypothetical protein FRACYDRAFT_184733 [Fragilario... [more]
XP_005781105.18.700e-1125.91hypothetical protein EMIHUDRAFT_234836 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL036nonsL036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR124ngnoR124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008352NSK008352Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01660.1NO23G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608600gene_10025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01660.1NO23G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01660 ID=NO23G01660|Name=NO23G01660|organism=Nannochloropsis oceanica|type=gene|length=1283bp
GCTGTGTTCTTCATCGCCAACGGCTTCTTCCAACGCCTGACGCACACACG
ATCCTGATCTATGTCCACCGGCTTGTGAAACCAGAGATATCATGCGTACC
ACTGAAGTTTGTGGGCAGCCTGACAGTTATGTCTTCTAATTTCACACGCA
GTTGCCACAGCCTAGTAACGCGGAGGTACAAAGAGCATCAATACACACTT
GCGTGACCGTCCCTCCGACCTCCTCCTACCCGTCCGACGCGACTACGCGC
CTGCCATGCTGTACACCTCTGCAGGATCAGATCCTACACGCACCCGCATC
GCGATGAACTGACTCTTCTACTATGTTTTTCGCTCCTACTTAATTGATGT
GCACCAGAACCATGACGTCTTATTCTCCGATTCCACTCACTGCCACAGGT
CACGCCAGCATCAGCCAAGGCACACCCATTCTGATACCAACCTCCTTCTA
TGGCGACGCCATCATATTCACTCATATATTGCATCGGCACCCTCCTGTTT
TTTGCCTTCAGCACACACGCCTTTCTCCTCCCTACCACCATCAAGCGGAG
CAGCAGGTCATCAAGTCGCTGCACTCTTCGCATGTCGGCTGCTTCTTCAT
CCCCACCCTCTGAAGCCGAATTAGTAAAGGTATTTGGTCGTCTTGCAGAC
AAAGCTATCTTCATGGACGAAAGCGCTGGACAATGTTGTCACTCCGGCTG
CGACAACTGCGAATGGCGTTATGATTTTGACATCATGCGTGCCGCCCGCC
CAAAATGGCTGGTAACGTATGCCGAGCGAAAATTTGATTCCGACGCGCAC
ACTGCCAAGTGGAAGGCGCTCTTTGACGCTCCATCTGCCCCTATCTCTTC
CTCTCCTCTCTCAGACGAAGACATCTTCAACACGGAGACAGCTGGTCCTA
CTCCCTTGTCCTCCGCTGTCTTGCTTGCGGAACGGCTCTCGGCTCTGCCT
TTTAGCGCGCCGTTGGGGCCAAGCGTGAGTGTGCCCGGTGAAGAGCCACT
CCAGGCTGAGACTGTTGCATGGCTGTGGGAGAAACTGGTGCCGGCGGGGA
GTAAGAGTAGGACATTGACGGCGAGGTTGATGGAGAAGCGATTGAAGGAG
TGGGCGAGTGGAAAGGATTCGATGATGTGGGGGGACTTCGTTGCCAAGAT
GACGAGCGAGGAGTGAAGAGTGAGGGATTGAATAAAAAAAAGTCGAGGGA
GAAGAGGAAAATACACTGTAATATAGAAAGAACGTGAACGAAGCGAAGGA
AAAAAGAAAAGCCAAGGGCGGATATTCGGGCAA
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protein sequence of NO23G01660.1

>NO23G01660.1-protein ID=NO23G01660.1-protein|Name=NO23G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MATPSYSLIYCIGTLLFFAFSTHAFLLPTTIKRSSRSSSRCTLRMSAASS
SPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAAR
PKWLVTYAERKFDSDAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGP
TPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAG
SKSRTLTARLMEKRLKEWASGKDSMMWGDFVAKMTSEE*
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Synonyms
Publications