NO23G01610, NO23G01610 (gene) Nannochloropsis oceanica

Overview
NameNO23G01610
Unique NameNO23G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4538
Alignment locationchr23:595742..600279 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:595742..600279 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G01610 vs. NCBI_GenBank
Match: XP_001742402.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ92640.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-7
Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 0 
Query: 1214 LIFALLSAVCGHMPSWALDDLILTLVGFLSAFPXXXXXXXXXXXXXXXXXITMQWMAWAIALPYFPRAHVSAQARSLFINQIEECMRKKDVKKFKAAVKAFCGGKKKGTAGMP 1327
            ++  LLSA+C   PS  L+D + T    +  +                     +W+AWAI  P FPR  VSA A+ +F  ++ + +++    + K  +K FCGGKKKGT+G P
Sbjct:  896 IVATLLSALCLIFPSHMLEDTVATFRRLMQPYSLERVG---------------EWVAWAINQPAFPRYSVSATAKQIFAQEVVQALQQPASSRLKGTIKQFCGGKKKGTSGTP 993
[Close]
BLAST of NO23G01610 vs. NCBI_GenBank
Match: XP_004988343.1 (hypothetical protein PTSG_10292 [Salpingoeca rosetta] >EGD80018.1 hypothetical protein PTSG_10292 [Salpingoeca rosetta])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-7
Identity = 44/112 (39.29%), Postives = 58/112 (51.79%), Query Frame = 0 
Query: 1218 LLSAVCGHMPSWALDDL---ILTLVGFLSAFPXXXXXXXXXXXXXXXXXITMQWMAWAIALPYFPRAHVSAQARSLFINQIEECMRKKDVKKFKAAVKAFCGGKKKGTAGMP 1327
            LL AVCG +PSWALDD+   I T++  LSA                   +T Q +  A+  P F R  VS +A+ +F+   +      D K+ K AVK FCGGKKK T+G P
Sbjct:  983 LLLAVCGGLPSWALDDIMQAIRTIMECLSA------------------DVTSQLLYGAMCQPTFARPDVSDKAKLIFLEDFQRLGATSDWKRLKNAVKKFCGGKKKNTSGTP 1076
The following BLAST results are available for this feature:
BLAST of NO23G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_001742402.11.300e-732.74hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_004988343.13.000e-739.29hypothetical protein PTSG_10292 [Salpingoeca roset... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL036nonsL036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR124ngnoR124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01610.1NO23G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|307983gene_10031Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01610.1NO23G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01610 ID=NO23G01610|Name=NO23G01610|organism=Nannochloropsis oceanica|type=gene|length=4538bp
GTGGAAGATGACCACGCCATTTTTGCTGTGCATGCGCAATTCCCCCTCCT
TCCCCTCCACCTTTTTCTTGTCATCCTCCCCCAGGGCAGCCTCCCTCCGC
TGTACATGTTCGCAACCGCATTAAGTGCCTGCCGTCGCTCGCCACGTAAG
GCGGAGACTGCTCTTATCATCACATGTCGCCAGCGACGCCCCACCACATC
GAACCTGATTCCCTGATTCTCCCCCATCCTTTTTCATGGTCCATCCCACA
CTACAGTACGACCGAAATGTATACATCACTCGCACACACACAGGTGAAAT
ATCATGATGATACCACTCATTCTACATCGGCAACGTTCGTCTTCCAGACC
CTGACCTCCCCGCGAAATGGCAACCTCACCACCAGTGCCGCACACTCTCC
TTGAGCTCCTCCAGCAGCTCGAAGGCCACTTACACGCGCTCTTGTCGCCC
CAGCCAGCGGTAAATAAGGGAAATGGTGACAGCCATGATAAGTGGCTGCA
ACACTTCCAATTGGCTCCTGAGGCATGGGCCGTATGCGTGGAGGGCTTCC
GTCTCACCCTCGCAAGCCATCAGCACCAGTCTCTGCAAGAGCAGCAGCAG
CTGCACCACCAACACCATCACCACCACCGTCTTTCGCTTTTTCTCGCACA
GACCCTTGTCCTGAAAGCCCGCCGATCTTGGCGAGATGGTGGGTTGGCTG
ACCACCAAATACAGGAGCTTGCAGCATTACCTTTCCAAATCCTCGCCCTT
CAGCCTTCCCTACCTCAGCATTACGACCTCATCGTTACCCAACTATGCCT
CGGGCTTTGTGCCGCTGCCTTGACATGTCCACGCATCACACCCGAAAGTC
TTTTTGCTCACCTCATGGCATTGGCCTCTGAGGCAGGAAAAGGGGAAAAG
GAAGAGGAGGGGAGCGATACTGTGTGTATGCTCCGTCTAAAAGTCCTTGA
ACTTTTGCCTGAAGAGGCCCAAAGACGACGCACCCTCTCCCTTCCCGCTG
AACGGCGATCTGCCATCCTTCATAACCTGTGCCACGGAGGACTTGAGGGC
CCTGCTGGGTACGCCCTTGCATATCTCCTTTCCTCCTCCACCTCCTCCAC
CTCTTCCTCCTCCTCCTCCTCTTCCTTCCAGCCCTCGTCCTCGTGGTCCC
TTCCTCACTCCTCCCTCCGTGCGGTAGGGGCATGGTTGGAACTGAAAACT
GTGTCGTGGAACGATATTTTGAAGCCATTGGTGGTCCCGCACCTCACGGA
AATAGTGCTGAGGGAATGTCAGGGACGGAGGGAGGGAGGGAAGGAGGGAG
GGCTGGGAGCATCGGCACTGGATCTTTTGACTATCATTGTGACGGCAGCA
CCACCTGAAGGACCACCGTCCCTCTTGAAGGAGGAGGAGCAGCAGCAGTG
CCTGCGGCCGGGGCAGCAGAGCGTGGAGGTAGGCATGATGCTGCTGCCGT
TGCTTCGGAGTGTTTGGGTGTCGGTGGAGGGGGAAGGGCTGCCTGCCCTT
GAGTCTTCGGTTGGTCGGGCTTTCCTGGGACTGGTGGTAGCAGTGGGAAA
GGCAGGGCTATTGGAGATGGAGGATGGAGAGGACGAGGACGACGGGGAGG
GAGGGGAGCGGGAGACGCGAAAGTGGGGCGGTGGGGAAGGGAGGAGGCGG
AGAGGAGGAGGAGGAGGAAGGGGGGGAGCGACCGCAGCAGCTTGGCCATT
TCCACACGCTGCTGGTGGAGAAGAGGTTCTTCCTCTTCAGAGAGATCCCA
TGGCAATCCTGACCCCCCTCCTCCTCACCCTTGAACACGCGCCTCTGGAG
CTGGTTTTGCTGACCTTCGAGTTTTGGAATCACCTCGGCTGCAGCAGTTG
TACGACGAGCAGCAGCAGCAGCAGCGGCAGCAGCAACAGTGTCGGCAGTA
ACGACACGCCCTCTCCACCTTTGGCTTCTACCACAAGAGAAGACCAAACA
CTTTCCGCCCCTGCCTCCCTCCTCCTCATCCAGCACCATGCCCTCCGTCA
AGCCCTCCCTCGGCTCCTCCACCGCACTGCCTTCCCCCCCTCCTATCCCT
CATTCTCCTTGACTGCCCGTGAAGCCCTCCTAGAATTTCGAGAGGAGGCG
CGAGACGTCCTGCGTGCCTGGGTTCTGGTCCCCTCCTCCATCCCGCCCTC
CCCCCCTTCCTCCTTCACCCTCACCCTGCTGGCCCACGAGACGGTGACGC
ACCTCGAGCAGCTGGCAGAGGAGAGCTACTACAATCACCAGCACCAGCAG
CAGCAGCAGGGGGAAGCATCCGTCTTTCCCTCCTTCCCTCCACCATGGGC
CACTGCCGAGTCCCTCCTCCACGCGCTCACTGCCACTCCGAACACCCACC
CCCTCCCTCTTCTCCTCCCTCCCCCTCTCTTGCCCCGCCTCCTCCTCGCC
CTAGATTCTCTCCCCTCCCATCCTGCCCTCCTCCGCGCTGCCGTCTTCCT
TCTCTCCTCCTTCGCCGACTTCCTGGCCGCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCCTCCCTCGCTCTCGACCTCTGCCTCCGCTCCTTCTCCTTC
TCTCAGGCTTCCACCGAGACCTTTCCTTTCCTCTCAAAACAAGACCATGC
TGGGGCTGTTGCACTCCTCAAGCTCACCTCCCTCCCTCCCTCCCTCCATC
CCTTCCTCCCCTCTCCCGCCGATCGCCTCACCCTTGCGTATTTCTCCCTG
AGACGCCAAGAGGAAGGAGGAAGGGAGGGAGGGAGGGAGGGCTGCCCCCT
CACTCCTGCGAGCATAGCCTTAGTGTTGGAGGCTACGGCGAAAGTAGTGC
TCGCGACAAGAGACCCGGATAAGCTCGAAGCGCTCGTCGGGCCGATGTGG
GCACGGATTGGAGAAGAATTGTGTGGAAGGGAGGGAGGGAAGGAGGGAGG
GAGGGAGGGGGATGTGGTGACGCTGGAGTTGGAGGCGATAGAGGTGGTAG
TGCGGGCGGCTCGAACACTGATAGTGCAGGGCCAGAAGGCCAAGGCGCCT
CCGCCGCCGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAACAACA
GGTGGGGGTATCTCCTCCCTCCCTCCCTCTCCTTCCATCTATCGCCTCCG
TAGTCGCAGAGAGCTTCGTCGCCCGCGGGGAAGGGTTGACAGCGTTGCTT
GGGCTCCAGAGTATCAACTCTCCCTCCCTCCCTCCTTCCTCCCTCTCTTC
CCTTTGCCGTAGAAATAAGGGAAATGGGTGGTCGACCGCCTCACTACAGC
TTACCACTGCGCTCTTCCGTCTCTTGCAAGTCGAGCTTGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGTTTCCAACAGGGACAACCTCCGACG
CATCTTCTTCCAATGTTTCTCCGCTTGGGCACCTCTGCTCCTCACCTCCA
CCACCACCAGCATCTCCCCACCTCCATCTTCCTCCTTCTCCTCCTCCCCC
ACTCCCTCCTTCGTCCTCCTTCCTGTCCAGCTGTCTTGGGCGGAGGCTGC
GCTTGCCGTTGGTCTCACTTTGGGTACAGATTCAATCAACGCTCCTTGGG
AAGTCTACCGCACTCTCTCCCAACGCGCTGCCCATCTCCTCCTCCAGATA
GCTCCTCCCTCCCTCATTCCTTCCTTCTTACATGTACAAAGGGAGGACCT
AGCTGCCGCGTTCTTTTCTTCATGGACTCGCGTCCTCCTCCTTTTCTTCC
CTTCTTCCTCTTTCTCATCCTCGTCCTCCTCCTCTTCCCTGAATGCCATC
ACAAGCAGCAATGGCAGAAACACCCTCTCATGTTCCTCCTCCCTTCTTTC
TCCATTTTTCCCTCTCATTCTCGCCACCGCTGCCTCGTGTCTAAACCTGC
AAGAACGCACCGGCGCCCGAGCCGTCCTCCTCTTCGTCCGCAAGGCCTTC
CTCTTCCTCCCTTCGGCCTTTTTCCTTCCTCTTCCCATCATCACCCATCA
AAAGGAAAGAATAGAGAGAGGGGAGGATGGACCTCAACAATGCCTTGGCC
AGTCCCTCATTTTCGCTCTCCTTTCAGCAGTCTGTGGACACATGCCTTCC
TGGGCGCTGGATGACCTCATCCTCACCCTTGTTGGATTCCTTTCCGCCTT
CCCTCCACCTCCTTCTTCTTCACTTCCTTACCATCCCTCCTCCTCTTCCT
CATCTATCACCATGCAGTGGATGGCATGGGCTATCGCTCTCCCGTATTTC
CCGCGGGCTCATGTCAGTGCCCAAGCGCGAAGTCTTTTCATCAACCAAAT
CGAGGAATGCATGAGGAAAAAGGACGTTAAAAAGTTCAAAGCGGCTGTGA
AGGCCTTTTGTGGGGGCAAGAAAAAGGGGACGGCAGGCATGCCGCCCTCT
AGGGGAAGGAAGGGAGGAAGGGAGAAAGAGGACCCGAAAGAAGAGGAACA
GATTGACATGAGAATATGAATGAAAATTGTGACAGCTTTTATGTAAAGTA
TGGTAATCTTTGACTGTGTAGAAACAGGGATAGAGTACTCACAGAACATT
ATCGCAATAGTAAGACAAAAAGAAAAATAACAATAGTG
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protein sequence of NO23G01610.1

>NO23G01610.1-protein ID=NO23G01610.1-protein|Name=NO23G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1351bp
MATSPPVPHTLLELLQQLEGHLHALLSPQPAVNKGNGDSHDKWLQHFQLA
PEAWAVCVEGFRLTLASHQHQSLQEQQQLHHQHHHHHRLSLFLAQTLVLK
ARRSWRDGGLADHQIQELAALPFQILALQPSLPQHYDLIVTQLCLGLCAA
ALTCPRITPESLFAHLMALASEAGKGEKEEEGSDTVCMLRLKVLELLPEE
AQRRRTLSLPAERRSAILHNLCHGGLEGPAGYALAYLLSSSTSSTSSSSS
SSSFQPSSSWSLPHSSLRAVGAWLELKTVSWNDILKPLVVPHLTEIVLRE
CQGRREGGKEGGLGASALDLLTIIVTAAPPEGPPSLLKEEEQQQCLRPGQ
QSVEVGMMLLPLLRSVWVSVEGEGLPALESSVGRAFLGLVVAVGKAGLLE
MEDGEDEDDGEGGERETRKWGGGEGRRRRGGGGGRGGATAAAWPFPHAAG
GEEVLPLQRDPMAILTPLLLTLEHAPLELVLLTFEFWNHLGCSSCTTSSS
SSSGSSNSVGSNDTPSPPLASTTREDQTLSAPASLLLIQHHALRQALPRL
LHRTAFPPSYPSFSLTAREALLEFREEARDVLRAWVLVPSSIPPSPPSSF
TLTLLAHETVTHLEQLAEESYYNHQHQQQQQGEASVFPSFPPPWATAESL
LHALTATPNTHPLPLLLPPPLLPRLLLALDSLPSHPALLRAAVFLLSSFA
DFLAALPPSLPPSLPSLALDLCLRSFSFSQASTETFPFLSKQDHAGAVAL
LKLTSLPPSLHPFLPSPADRLTLAYFSLRRQEEGGREGGREGCPLTPASI
ALVLEATAKVVLATRDPDKLEALVGPMWARIGEELCGREGGKEGGREGDV
VTLELEAIEVVVRAARTLIVQGQKAKAPPPPQQQQQQQQQQQQQQVGVSP
PSLPLLPSIASVVAESFVARGEGLTALLGLQSINSPSLPPSSLSSLCRRN
KGNGWSTASLQLTTALFRLLQVELEGGREGGREGGRVSNRDNLRRIFFQC
FSAWAPLLLTSTTTSISPPPSSSFSSSPTPSFVLLPVQLSWAEAALAVGL
TLGTDSINAPWEVYRTLSQRAAHLLLQIAPPSLIPSFLHVQREDLAAAFF
SSWTRVLLLFFPSSSFSSSSSSSSLNAITSSNGRNTLSCSSSLLSPFFPL
ILATAASCLNLQERTGARAVLLFVRKAFLFLPSAFFLPLPIITHQKERIE
RGEDGPQQCLGQSLIFALLSAVCGHMPSWALDDLILTLVGFLSAFPPPPS
SSLPYHPSSSSSSITMQWMAWAIALPYFPRAHVSAQARSLFINQIEECMR
KKDVKKFKAAVKAFCGGKKKGTAGMPPSRGRKGGREKEDPKEEEQIDMRI
*
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Synonyms
Publications