NO23G01250, NO23G01250 (gene) Nannochloropsis oceanica

Overview
NameNO23G01250
Unique NameNO23G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2099
Alignment locationchr23:448423..450521 +

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Properties
Property NameValue
DescriptionUPF0301 protein SRM_00577
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:448423..450521 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301
Homology
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: WP_011403273.1 (YqgE/AlgH family protein [Salinibacter ruber] >YP_444640.1 hypothetical protein SRU_0495 [Salinibacter ruber DSM 13855] >Q2S591.1 RecName: Full=UPF0301 protein SRU_0495 >ABC44213.1 conserved hypothetical protein [Salinibacter ruber DSM 13855] >CBH23498.1 Conserved hypothetical protein containing DUF179 [Salinibacter ruber M8])

HSP 1 Score: 94.4 bits (233), Expect = 1.000e-15
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 0 
Query:  243 VGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPVPR--LQMLHTDPEV-GGMPLPPSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLP 394
            +GPG +L++ PMM    F+R+V+ L EH+ +EG +GLILN+  D +L D ++       Y  +    L  GGPV R  L  LHT  ++ GG+ LP         W   GGD++   +     ++  D+  FF G   W P QLEGE+    W+P
Sbjct:    9 LGPGTLLISAPMMQDPNFRRSVVLLCEHNDREGTFGLILNRELDVSLGDVLDE------YVTY-DPPLYMGGPVQRETLHYLHTREDIPGGVALP-----GDMTW---GGDFEAVQQLAKGGDAAPDNLRFFLGYAGWGPGQLEGELGEEAWIP 147
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: ETK85754.1 (hypothetical protein L915_09532 [Phytophthora parasitica])

HSP 1 Score: 91.7 bits (226), Expect = 6.800e-15
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 0 
Query:  235 NAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPV--PRLQMLHTDPEVGGMPLP-PSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPV 395
            + V+L +    GV LLAHP+++  IF R+V+ L EH + EG+ G I+NK ++  L    +  +     +AFA+S +R+GGPV     ++LH  P+ GG  +P  +         + G D   AAR +    + +    F +G   WSP QL+ E+ +G W+ V
Sbjct:  126 DGVQLAENAASGVFLLAHPLLE-GIFSRSVVILTEH-RPEGSKGFIVNKISEKPLGRAFQ--VPSRVTRAFATSTVRKGGPVFTRNAEVLHGRPDFGGQRVPTTNFPTANDPSLFVGVDLDAAARAIYDETAKQTDVVFMSGVSAWSPGQLDSELQQGSWVAV 284
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: ETM45599.1 (hypothetical protein L914_09399 [Phytophthora parasitica])

HSP 1 Score: 91.7 bits (226), Expect = 6.800e-15
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 0 
Query:  235 NAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPV--PRLQMLHTDPEVGGMPLP-PSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPV 395
            + V+L +    GV LLAHP+++  IF R+V+ L EH + EG+ G I+NK ++  L    +  +     +AFA+S +R+GGPV     ++LH  P+ GG  +P  +         + G D   AAR +    + +    F +G   WSP QL+ E+ +G W+ V
Sbjct:  126 DGVQLAENAASGVFLLAHPLLE-GIFSRSVVILTEH-RPEGSKGFIVNKISEKPLGRAFQ--VPSRVTRAFATSTVRKGGPVFTRNAEVLHGRPDFGGQRVPTTNFPTANDPSLFVGVDLDAAARAIYDETAKQTDVVFMSGVSAWSPGQLDSELQQGSWVAV 284
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: ETL39183.1 (hypothetical protein L916_09434 [Phytophthora parasitica])

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-14
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 0 
Query:  235 NAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPV--PRLQMLHTDPEVGGMPLP-PSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPV 395
            + V+L +    GV LLAHP+++  IF R+V+ L EH + EG+ G I+NK  +  L    +  +     +AFA+S +R+GGPV     ++LH  P+ GG  +P  +         + G D   AAR +    + +    F +G   WSP QL+ E+ +G W+ V
Sbjct:  126 DGVQLAENAASGVFLLAHPLLE-GIFSRSVVILTEH-RPEGSKGFIVNKILEKPLGRAFQ--VPSRVTRAFATSTVRKGGPVFTRNAEVLHGRPDFGGQRVPTTNFPTANDPSLFVGVDLDAAARAIYDETAKQTDVVFMSGVSAWSPGQLDSELQQGSWVAV 284
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: WP_103019593.1 (YqgE/AlgH family protein [Salinibacter altiplanensis])

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-14
Identity = 55/154 (35.71%), Postives = 78/154 (50.65%), Query Frame = 0 
Query:  243 VGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPVPR--LQMLHTDPEV-GGMPLPPSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLP 394
            +GPG +L++ PMM    F+RAV+ + EH+ +EG +GLILN+  D  L D ++       Y  +  S L  GGPV R  L  LH   ++ GG+ LP         W   GGD++   R     ++  D   FF G   W P QL+ EI    W+P
Sbjct:    9 LGPGTLLISAPMMQDPNFRRAVVLICEHNDREGTFGLILNRELDVQLGDVLDE------YVTYDPS-LYMGGPVQRETLHYLHMRDDIPGGVVLP-----GDVTW---GGDFETVQRLAKGGDAAPDDLRFFLGYAGWGPGQLDDEIGEEAWIP 147
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: WP_103027053.1 (YqgE/AlgH family protein [Salinibacter altiplanensis])

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-14
Identity = 55/154 (35.71%), Postives = 78/154 (50.65%), Query Frame = 0 
Query:  243 VGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPVPR--LQMLHTDPEV-GGMPLPPSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLP 394
            +GPG +L++ PMM    F+RAV+ + EH+ +EG +GLILN+  D  L D ++       Y  +  S L  GGPV R  L  LH   ++ GG+ LP         W   GGD++   R     ++  D   FF G   W P QL+ EI    W+P
Sbjct:    9 LGPGTLLISAPMMQDPNFRRAVVLICEHNDREGTFGLILNRELDVQLGDVLDE------YVTYDPS-LYMGGPVQRETLHYLHMRDDIPGGVVLP-----GDVTW---GGDFETVQRLAKGGDAAPDDLRFFLGYAGWGPGQLDDEIGEEAWIP 147
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: CCI42251.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 89.4 bits (220), Expect = 3.400e-14
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 0 
Query:  235 NAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPVP--RLQMLHTDPEVGGMPLPPSXXXXXXXWC------YAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPVA 396
            + V+    +  G  LLAHP++D  IF R+VI + +HS  +G  GLI+N  +  ++A T +  L      AF S+ +  GGPV     ++LH    +GG+ +           C      + GGD + AAR     E+      FF G   W P QLE E+ RG W+PV+
Sbjct:  119 SGVRHAATLDTGTFLLAHPLLD-GIFSRSVILITQHSLHKGTRGLIVNLLSSDSVARTFKVSL--DVSSAFGSNPVFCGGPVSSRHAEILHGKSGIGGIDIKSVADTAVDSQCDVINQVFWGGDLEAAARATPKEEAKASEVVFFKGVSVWIPGQLENELRRGTWIPVS 284
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: CCI42252.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 89.4 bits (220), Expect = 3.400e-14
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 0 
Query:  235 NAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPVP--RLQMLHTDPEVGGMPLPPSXXXXXXXWC------YAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPVA 396
            + V+    +  G  LLAHP++D  IF R+VI + +HS  +G  GLI+N  +  ++A T +  L      AF S+ +  GGPV     ++LH    +GG+ +           C      + GGD + AAR     E+      FF G   W P QLE E+ RG W+PV+
Sbjct:  115 SGVRHAATLDTGTFLLAHPLLD-GIFSRSVILITQHSLHKGTRGLIVNLLSSDSVARTFKVSL--DVSSAFGSNPVFCGGPVSSRHAEILHGKSGIGGIDIKSVADTAVDSQCDVINQVFWGGDLEAAARATPKEEAKASEVVFFKGVSVWIPGQLENELRRGTWIPVS 280
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: XP_008892746.1 (hypothetical protein PPTG_01261 [Phytophthora parasitica INRA-310] >ETL92288.1 hypothetical protein L917_09372 [Phytophthora parasitica] >ETN20890.1 hypothetical protein PPTG_01261 [Phytophthora parasitica INRA-310])

HSP 1 Score: 88.6 bits (218), Expect = 5.700e-14
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 0 
Query:  235 NAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPV--PRLQMLHTDPEVGGMPLP-PSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPV 395
            + V+L +    GV LLAHP+++  IF R+V+ L EH + EG+ G I+NK ++  L    +  +     +AFA+S +R+GGPV     ++LH   + GG  +P  +         + G D   AAR +    + +    F +G   WSP QL+ E+ +G W+ V
Sbjct:  126 DGVQLAENAASGVFLLAHPLLE-GIFSRSVVILTEH-RPEGSKGFIVNKISEKPLGRAFQ--VPSRVTRAFATSTVRKGGPVFTRNAEVLHGRADFGGQRVPTTNFPTANDPSLFVGVDLDAAARAIYDETAKQTDVVFMSGVSAWSPGQLDSELQQGSWVAV 284
[Close]
BLAST of NO23G01250 vs. NCBI_GenBank
Match: PSQ80106.1 (hypothetical protein BRD41_05855 [Bacteroidetes bacterium QS_1_63_11])

HSP 1 Score: 88.2 bits (217), Expect = 7.500e-14
Identity = 54/155 (34.84%), Postives = 77/155 (49.68%), Query Frame = 0 
Query:  243 VGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPVPR--LQMLHTDPE--VGGMPLPPSXXXXXXXWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLP 394
            +GPG  L++ PMM    F+R+V+ L EH+ QEGA+GLILN+  D  L D ++       Y  +    L  GGPV R  L  LHT P+   GG+ L          W   GG+++         ++  D+  FF G   W P QL+ E+    W+P
Sbjct:    8 LGPGTFLISAPMMQDPNFRRSVVLLCEHNDQEGAFGLILNRELDVQLGDVLDA------YVTY-DPPLYMGGPVQRETLHYLHTRPDDIPGGVGL-----RGDVTW---GGNFEVVQELAKGGDAAPDNLRFFLGYAGWGPGQLDAELGEEAWIP 147
The following BLAST results are available for this feature:
BLAST of NO23G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_011403273.11.000e-1535.71YqgE/AlgH family protein [Salinibacter ruber] >YP_... [more]
ETK85754.16.800e-1533.13hypothetical protein L915_09532 [Phytophthora para... [more]
ETM45599.16.800e-1533.13hypothetical protein L914_09399 [Phytophthora para... [more]
ETL39183.11.200e-1433.13hypothetical protein L916_09434 [Phytophthora para... [more]
WP_103019593.11.200e-1435.71YqgE/AlgH family protein [Salinibacter altiplanens... [more]
WP_103027053.11.200e-1435.71YqgE/AlgH family protein [Salinibacter altiplanens... [more]
CCI42251.13.400e-1433.14unnamed protein product [Albugo candida][more]
CCI42252.13.400e-1433.14unnamed protein product [Albugo candida][more]
XP_008892746.15.700e-1432.52hypothetical protein PPTG_01261 [Phytophthora para... [more]
PSQ80106.17.500e-1434.84hypothetical protein BRD41_05855 [Bacteroidetes ba... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01250.1NO23G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01250.1NO23G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01250 ID=NO23G01250|Name=NO23G01250|organism=Nannochloropsis oceanica|type=gene|length=2099bp
ATGCCTGTGCCTGCCTCTCCAGCAATACGCAACCCCATCCTCGTCAAAAC
CCTCTACAGgtacctcccaccctccctcttcaacatcatcggcatattcc
gattacactttcaattattgatggtcgtggctcgatccttattcttccct
ttctcccttcctccgctcattccttcctaagATCCCTCCTCCGCCTCGCC
CACCTGTTTGATGCCCATCCCGCCTCCAAAGTCTGTCTACATATCCGTCC
TCCCTCGTTCTCTCCTTCCTCACCCATGTTCTTGTCGTCCTCGTCTGCCT
GGTCATCATACCACGACGCAATTACCGAGCTGTTGGGTGGGGAGGGGAGG
TTGTACTTAAGTCCGAACAGATGTAATGCTGTGAGCATTAAGGGATTGGT
GAGGAAATATTTTAGGGTGCCTGAGGAGGAGGAGGAGAAGGAGGGAAGCA
AGAAGGAGAGGCCTATTGGGACAAGGTGGAGGAAAGAGGCGCGGGGAGAG
GTGGAGAAAGAAGAGGATGAGGAGGAGTGGGACGGAGGGAGGGAGGGAGA
AAGAGATAGGTTGGACGCGGCTTTTTTAGCTTTGAGAGAATTGAGTAAGG
CGTGGCATGCTATAGAGATGCATGTGTTGCCATTGATGAGGAAGGAGGGG
AGGAGGGAAGGAGGGGAGAAGCAAGTGGGAAGAGGCAGCAGTACCACTAC
CAACAACAGCAATATCAGCGCCAGCAATGACGACAGTGAAAGAAGCAGCA
GCAGCAGCAGCAGTAGGAGTAGTAGTAGAAGTAGGTCTACTAGTACTACA
ACTACTAGCAGTAGTAGTAGTTTTAACGCAGTCAAGCTCGTGAAGAGAGT
AGGGCCTGGCGTGATCCTACTCGCGCACCCCATGATGgtatgtgacttcc
ctccctccctcccttcctccctctttccctctttccctcccaccctccct
ccctcaccattcctcaagcagtagcatcccttactccatcgtcccctctc
tctctcctttcctcctcccctccctcctcccctccctcagGACCACGATA
TCTTCCAACGGGCTGTCATTTACTTGGTCGAACACTCGAAACAGGAGGGC
GCTTATGGCCTCATTCTCAACAAGAGCACCGACGCCGCCCTTGCCGACAC
GGTGGAAGgcacgtcctgccctccctccctctctccctcccttccgtcac
aactttcaaactgccctcctccctccctccctccctccctccttccctcc
ctccctccttccctccttccctccttccctccttccctcctttccccctt
ccctccatccttcccttcttcagGTGGCCTCGCCCCTCATTTCTACCAAG
CGTTTGCTTCTTCCCGTCTGCGAAGAGGCGGTCCTGTCCCTCGCCTTCAG
ATGCTGCACACCGACCCCGAAGTAGGAGGGATGCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCCCCCTGGTGCTATGCAGGAGGGGACTGGAAAGAGG
CGGCCAGAAAGGTCGTGAGCAGCGAAAGTGGAAGAGgtgtgtgcatccac
ccttcatctttccctccctccttcccttcctacgtctctccttcggacag
cggacagcgagacgtggcccctatcatcccttgccgcccttcctccctcc
cttccttcctctcacacgacaaacaaacaaacaaacaaacaaacaattaa
atatacagacatatgaagatatgaagatatatttacataaatgttacttt
attcattcacacacgcacagACTCCTTTCACTTCTTCGCTGGTGCCTGCA
CCTGGTCGCCCTCCCAGCTCGAAGGAGAAATCTCCCGGGGCCTCTGGCTT
CCCGTTGCCCTCGAGGAAGGAATGGAAGGAAGGAGGGAGGGCATCAGGCT
GCTCCTCCAGCAGAATGAGGGGGGGGAAGGGGAGGGCAGAGGGAGGGCAG
GCGTGCAGGAGAGAGAGATGTGGAGGGAGGTGATGAAGGGGGTGGGAAAG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGGTGTGAGTGGGCAGCAGA
ATTCTCGGAAGTAGCGGCGGGGAAGGTCGGGCCGATGGAGTTCTTGTAA
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protein sequence of NO23G01250.1

>NO23G01250.1-protein ID=NO23G01250.1-protein|Name=NO23G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MPVPASPAIRNPILVKTLYRSLLRLAHLFDAHPASKVCLHIRPPSFSPSS
PMFLSSSSAWSSYHDAITELLGGEGRLYLSPNRCNAVSIKGLVRKYFRVP
EEEEEKEGSKKERPIGTRWRKEARGEVEKEEDEEEWDGGREGERDRLDAA
FLALRELSKAWHAIEMHVLPLMRKEGRREGGEKQVGRGSSTTTNNSNISA
SNDDSERSSSSSSSRSSSRSRSTSTTTTSSSSSFNAVKLVKRVGPGVILL
AHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPH
FYQAFASSRLRRGGPVPRLQMLHTDPEVGGMPLPPSLPPSLPPWCYAGGD
WKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPVALEEGM
EGRREGIRLLLQQNEGGEGEGRGRAGVQEREMWREVMKGVGKREGGREGG
REGCEWAAEFSEVAAGKVGPMEFL*
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Synonyms
Publications