NO23G01250.1, NO23G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01250.1
Unique NameNO23G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr23:448423..450521 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:448423..450521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01250.1 vs.
Match: ETM45599.1 (hypothetical protein L914_09399 [Phytophthora parasitica])

HSP 1 Score: 96.7 bits (239), Expect = 2.100e-16
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 0 
Query:  233 SFNAVKLVKRVGPGVILLAHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPHFYQAFASSRLRRGGPV--PRLQMLHTDPEVGGMPLPPS-LPPSLPPWCYAGGDWKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPV 395
            + + V+L +    GV LLAHP+++  IF R+V+ L EH + EG+ G I+NK ++  L    +  +     +AFA+S +R+GGPV     ++LH  P+ GG  +P +  P +  P  + G D   AAR +    + +    F +G   WSP QL+ E+ +G W+ V
Sbjct:  124 TLDGVQLAENAASGVFLLAHPLLE-GIFSRSVVILTEH-RPEGSKGFIVNKISEKPLGRAFQ--VPSRVTRAFATSTVRKGGPVFTRNAEVLHGRPDFGGQRVPTTNFPTANDPSLFVGVDLDAAARAIYDETAKQTDVVFMSGVSAWSPGQLDSELQQGSWVAV 284
The following BLAST results are available for this feature:
BLAST of NO23G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ETM45599.12.100e-1633.94hypothetical protein L914_09399 [Phytophthora para... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01250NO23G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01250.1NO23G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01250.1.cds1NO23G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01250.1.cds2NO23G01250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01250.1.cds3NO23G01250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01250.1.cds4NO23G01250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01250.1.cds5NO23G01250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01250.1 ID=NO23G01250.1|Name=NO23G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
ATGCCTGTGCCTGCCTCTCCAGCAATACGCAACCCCATCCTCGTCAAAAC
CCTCTACAGATCCCTCCTCCGCCTCGCCCACCTGTTTGATGCCCATCCCG
CCTCCAAAGTCTGTCTACATATCCGTCCTCCCTCGTTCTCTCCTTCCTCA
CCCATGTTCTTGTCGTCCTCGTCTGCCTGGTCATCATACCACGACGCAAT
TACCGAGCTGTTGGGTGGGGAGGGGAGGTTGTACTTAAGTCCGAACAGAT
GTAATGCTGTGAGCATTAAGGGATTGGTGAGGAAATATTTTAGGGTGCCT
GAGGAGGAGGAGGAGAAGGAGGGAAGCAAGAAGGAGAGGCCTATTGGGAC
AAGGTGGAGGAAAGAGGCGCGGGGAGAGGTGGAGAAAGAAGAGGATGAGG
AGGAGTGGGACGGAGGGAGGGAGGGAGAAAGAGATAGGTTGGACGCGGCT
TTTTTAGCTTTGAGAGAATTGAGTAAGGCGTGGCATGCTATAGAGATGCA
TGTGTTGCCATTGATGAGGAAGGAGGGGAGGAGGGAAGGAGGGGAGAAGC
AAGTGGGAAGAGGCAGCAGTACCACTACCAACAACAGCAATATCAGCGCC
AGCAATGACGACAGTGAAAGAAGCAGCAGCAGCAGCAGCAGTAGGAGTAG
TAGTAGAAGTAGGTCTACTAGTACTACAACTACTAGCAGTAGTAGTAGTT
TTAACGCAGTCAAGCTCGTGAAGAGAGTAGGGCCTGGCGTGATCCTACTC
GCGCACCCCATGATGGACCACGATATCTTCCAACGGGCTGTCATTTACTT
GGTCGAACACTCGAAACAGGAGGGCGCTTATGGCCTCATTCTCAACAAGA
GCACCGACGCCGCCCTTGCCGACACGGTGGAAGGTGGCCTCGCCCCTCAT
TTCTACCAAGCGTTTGCTTCTTCCCGTCTGCGAAGAGGCGGTCCTGTCCC
TCGCCTTCAGATGCTGCACACCGACCCCGAAGTAGGAGGGATGCCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCCCCCTGGTGCTATGCAGGAGGGGAC
TGGAAAGAGGCGGCCAGAAAGGTCGTGAGCAGCGAAAGTGGAAGAGACTC
CTTTCACTTCTTCGCTGGTGCCTGCACCTGGTCGCCCTCCCAGCTCGAAG
GAGAAATCTCCCGGGGCCTCTGGCTTCCCGTTGCCCTCGAGGAAGGAATG
GAAGGAAGGAGGGAGGGCATCAGGCTGCTCCTCCAGCAGAATGAGGGGGG
GGAAGGGGAGGGCAGAGGGAGGGCAGGCGTGCAGGAGAGAGAGATGTGGA
GGGAGGTGATGAAGGGGGTGGGAAAGAGGGAAGGAGGGAGGGAGGGAGGG
AGGGAGGGGTGTGAGTGGGCAGCAGAATTCTCGGAAGTAGCGGCGGGGAA
GGTCGGGCCGATGGAGTTCTTGTAA
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protein sequence of NO23G01250.1

>NO23G01250.1-protein ID=NO23G01250.1-protein|Name=NO23G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MPVPASPAIRNPILVKTLYRSLLRLAHLFDAHPASKVCLHIRPPSFSPSS
PMFLSSSSAWSSYHDAITELLGGEGRLYLSPNRCNAVSIKGLVRKYFRVP
EEEEEKEGSKKERPIGTRWRKEARGEVEKEEDEEEWDGGREGERDRLDAA
FLALRELSKAWHAIEMHVLPLMRKEGRREGGEKQVGRGSSTTTNNSNISA
SNDDSERSSSSSSSRSSSRSRSTSTTTTSSSSSFNAVKLVKRVGPGVILL
AHPMMDHDIFQRAVIYLVEHSKQEGAYGLILNKSTDAALADTVEGGLAPH
FYQAFASSRLRRGGPVPRLQMLHTDPEVGGMPLPPSLPPSLPPWCYAGGD
WKEAARKVVSSESGRDSFHFFAGACTWSPSQLEGEISRGLWLPVALEEGM
EGRREGIRLLLQQNEGGEGEGRGRAGVQEREMWREVMKGVGKREGGREGG
REGCEWAAEFSEVAAGKVGPMEFL*
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mRNA from alignment at chr23:448423..450521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01250.1 ID=NO23G01250.1|Name=NO23G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at chr23:448423..450521+ (Nannochloropsis oceanica)
ATGCCTGTGCCTGCCTCTCCAGCAATACGCAACCCCATCCTCGTCAAAAC
CCTCTACAGGTACCTCCCACCCTCCCTCTTCAACATCATCGGCATATTCC
GATTACACTTTCAATTATTGATGGTCGTGGCTCGATCCTTATTCTTCCCT
TTCTCCCTTCCTCCGCTCATTCCTTCCTAAGATCCCTCCTCCGCCTCGCC
CACCTGTTTGATGCCCATCCCGCCTCCAAAGTCTGTCTACATATCCGTCC
TCCCTCGTTCTCTCCTTCCTCACCCATGTTCTTGTCGTCCTCGTCTGCCT
GGTCATCATACCACGACGCAATTACCGAGCTGTTGGGTGGGGAGGGGAGG
TTGTACTTAAGTCCGAACAGATGTAATGCTGTGAGCATTAAGGGATTGGT
GAGGAAATATTTTAGGGTGCCTGAGGAGGAGGAGGAGAAGGAGGGAAGCA
AGAAGGAGAGGCCTATTGGGACAAGGTGGAGGAAAGAGGCGCGGGGAGAG
GTGGAGAAAGAAGAGGATGAGGAGGAGTGGGACGGAGGGAGGGAGGGAGA
AAGAGATAGGTTGGACGCGGCTTTTTTAGCTTTGAGAGAATTGAGTAAGG
CGTGGCATGCTATAGAGATGCATGTGTTGCCATTGATGAGGAAGGAGGGG
AGGAGGGAAGGAGGGGAGAAGCAAGTGGGAAGAGGCAGCAGTACCACTAC
CAACAACAGCAATATCAGCGCCAGCAATGACGACAGTGAAAGAAGCAGCA
GCAGCAGCAGCAGTAGGAGTAGTAGTAGAAGTAGGTCTACTAGTACTACA
ACTACTAGCAGTAGTAGTAGTTTTAACGCAGTCAAGCTCGTGAAGAGAGT
AGGGCCTGGCGTGATCCTACTCGCGCACCCCATGATGGTATGTGACTTCC
CTCCCTCCCTCCCTTCCTCCCTCTTTCCCTCTTTCCCTCCCACCCTCCCT
CCCTCACCATTCCTCAAGCAGTAGCATCCCTTACTCCATCGTCCCCTCTC
TCTCTCCTTTCCTCCTCCCCTCCCTCCTCCCCTCCCTCAGGACCACGATA
TCTTCCAACGGGCTGTCATTTACTTGGTCGAACACTCGAAACAGGAGGGC
GCTTATGGCCTCATTCTCAACAAGAGCACCGACGCCGCCCTTGCCGACAC
GGTGGAAGGCACGTCCTGCCCTCCCTCCCTCTCTCCCTCCCTTCCGTCAC
AACTTTCAAACTGCCCTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCC
CTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTTCCCCCTT
CCCTCCATCCTTCCCTTCTTCAGGTGGCCTCGCCCCTCATTTCTACCAAG
CGTTTGCTTCTTCCCGTCTGCGAAGAGGCGGTCCTGTCCCTCGCCTTCAG
ATGCTGCACACCGACCCCGAAGTAGGAGGGATGCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCCCCCTGGTGCTATGCAGGAGGGGACTGGAAAGAGG
CGGCCAGAAAGGTCGTGAGCAGCGAAAGTGGAAGAGGTGTGTGCATCCAC
CCTTCATCTTTCCCTCCCTCCTTCCCTTCCTACGTCTCTCCTTCGGACAG
CGGACAGCGAGACGTGGCCCCTATCATCCCTTGCCGCCCTTCCTCCCTCC
CTTCCTTCCTCTCACACGACAAACAAACAAACAAACAAACAAACAATTAA
ATATACAGACATATGAAGATATGAAGATATATTTACATAAATGTTACTTT
ATTCATTCACACACGCACAGACTCCTTTCACTTCTTCGCTGGTGCCTGCA
CCTGGTCGCCCTCCCAGCTCGAAGGAGAAATCTCCCGGGGCCTCTGGCTT
CCCGTTGCCCTCGAGGAAGGAATGGAAGGAAGGAGGGAGGGCATCAGGCT
GCTCCTCCAGCAGAATGAGGGGGGGGAAGGGGAGGGCAGAGGGAGGGCAG
GCGTGCAGGAGAGAGAGATGTGGAGGGAGGTGATGAAGGGGGTGGGAAAG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGGTGTGAGTGGGCAGCAGA
ATTCTCGGAAGTAGCGGCGGGGAAGGTCGGGCCGATGGAGTTCTTGTAA
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Coding sequence (CDS) from alignment at chr23:448423..450521+

>NO23G01250.1 ID=NO23G01250.1|Name=NO23G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr23:448423..450521+ (Nannochloropsis oceanica)
ATGCCTGTGCCTGCCTCTCCAGCAATACGCAACCCCATCCTCGTCAAAAC
CCTCTACAGATCCCTCCTCCGCCTCGCCCACCTGTTTGATGCCCATCCCG
CCTCCAAAGTCTGTCTACATATCCGTCCTCCCTCGTTCTCTCCTTCCTCA
CCCATGTTCTTGTCGTCCTCGTCTGCCTGGTCATCATACCACGACGCAAT
TACCGAGCTGTTGGGTGGGGAGGGGAGGTTGTACTTAAGTCCGAACAGAT
GTAATGCTGTGAGCATTAAGGGATTGGTGAGGAAATATTTTAGGGTGCCT
GAGGAGGAGGAGGAGAAGGAGGGAAGCAAGAAGGAGAGGCCTATTGGGAC
AAGGTGGAGGAAAGAGGCGCGGGGAGAGGTGGAGAAAGAAGAGGATGAGG
AGGAGTGGGACGGAGGGAGGGAGGGAGAAAGAGATAGGTTGGACGCGGCT
TTTTTAGCTTTGAGAGAATTGAGTAAGGCGTGGCATGCTATAGAGATGCA
TGTGTTGCCATTGATGAGGAAGGAGGGGAGGAGGGAAGGAGGGGAGAAGC
AAGTGGGAAGAGGCAGCAGTACCACTACCAACAACAGCAATATCAGCGCC
AGCAATGACGACAGTGAAAGAAGCAGCAGCAGCAGCAGCAGTAGGAGTAG
TAGTAGAAGTAGGTCTACTAGTACTACAACTACTAGCAGTAGTAGTAGTT
TTAACGCAGTCAAGCTCGTGAAGAGAGTAGGGCCTGGCGTGATCCTACTC
GCGCACCCCATGATGGACCACGATATCTTCCAACGGGCTGTCATTTACTT
GGTCGAACACTCGAAACAGGAGGGCGCTTATGGCCTCATTCTCAACAAGA
GCACCGACGCCGCCCTTGCCGACACGGTGGAAGGTGGCCTCGCCCCTCAT
TTCTACCAAGCGTTTGCTTCTTCCCGTCTGCGAAGAGGCGGTCCTGTCCC
TCGCCTTCAGATGCTGCACACCGACCCCGAAGTAGGAGGGATGCCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCCCCCTGGTGCTATGCAGGAGGGGAC
TGGAAAGAGGCGGCCAGAAAGGTCGTGAGCAGCGAAAGTGGAAGAGACTC
CTTTCACTTCTTCGCTGGTGCCTGCACCTGGTCGCCCTCCCAGCTCGAAG
GAGAAATCTCCCGGGGCCTCTGGCTTCCCGTTGCCCTCGAGGAAGGAATG
GAAGGAAGGAGGGAGGGCATCAGGCTGCTCCTCCAGCAGAATGAGGGGGG
GGAAGGGGAGGGCAGAGGGAGGGCAGGCGTGCAGGAGAGAGAGATGTGGA
GGGAGGTGATGAAGGGGGTGGGAAAGAGGGAAGGAGGGAGGGAGGGAGGG
AGGGAGGGGTGTGAGTGGGCAGCAGAATTCTCGGAAGTAGCGGCGGGGAA
GGTCGGGCCGATGGAGTTCTTGTAA
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Synonyms
Publications