NO23G01220, NO23G01220 (gene) Nannochloropsis oceanica

Overview
NameNO23G01220
Unique NameNO23G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1139
Alignment locationchr23:445294..446432 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:445294..446432 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01220.1NO23G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673353gene_8476Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01220.1NO23G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01220 ID=NO23G01220|Name=NO23G01220|organism=Nannochloropsis oceanica|type=gene|length=1139bp
TTCAGCCCCTCCACCACCATATCCATAGGTTCCCAACGAAGCGACAATGT
TTACCAATCATGTTTGATAATATAAACGCCCGGCAACGCCAAGTCCAGTC
CCTCTTCCTCCAGGCGGTTTCCCTGCTCCATCCAGAAGAGGAGGACGACG
ACGAGGAGGGAGAGAAGAATAACAACCATGTCCACAAGGAGAAAGAAGAA
GACGATGCCACACTCAGAGCACAGGCCGCCATCCTCCTGCACGATTGCAT
TGCCCTTCTCTCATCCTTTTCTACCACCCCTACCTCCCCCTACCCCGCCA
CCCTCGACAATCCAACTCACCTCCATTACTGTGCCTTGCTTGAGCTCGGC
CGCCATTTTGAGTCCTGCCCTTCTCTTCTTCCCACGTCCTCCCTCGCTTC
CTCCTTTTATCGACGGGCTGTGGCCCTGGCGACTGAGAGAGTGGAGCCTT
TGTTGTTATTAGGCGTGGCCCGAAAGAGGGAGGGAGGAAGGGAGGAAGGG
ATAAATATTCTGAGAGAGGCGGTGCGCAAAGCGAAGGAAAGAGAAGGAGC
GAGAAGAAGCAGGAGGGATGAAAAGAAGAGAAGGGGACAGGGAGTGAAAG
AAAAGAAGAAGCAGAGGAGGGAGAGCGAAGACAAAGGTAAACAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCAGGGA
GGACGATGCTGGGCGACAAGCAATGTTAGAGCTGGCGATGCTTCTGTTAC
AGTCTGCTGCTGATGGCGAGAATGGGGACGGGGACGAGGATGGAGGAGGG
AAGGTGGAGGAAATGAAGCAGAAAAAGAACAGCAGCATCAGCAGCAGTCG
TAGCAGAAGCATTTCCCATAATGAACAAGAAGCAGACAGCCTCCTTCACA
CCCTCTCTTTCACTTACCGTCTTTCTACCTCCATTTGGTCTTACCCCCTC
TCCTTCCCTCCCCCCTCCCGCTTTCCCGTCCTCCTTCCCTCCCGTCCTCC
TCCTTTCTCCACCTCTCCGACGGCGTCCTCCCTCCCTCCCTCCTTGGTGA
GATGCGCCGAGTGTTTTGCCCTCCCTCCGCCCCTTTTTGGGAGGAGCATG
GATATTACAGAGAAGGATGTGCGTATTTCTCGTATTTGA
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protein sequence of NO23G01220.1

>NO23G01220.1-protein ID=NO23G01220.1-protein|Name=NO23G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MFDNINARQRQVQSLFLQAVSLLHPEEEDDDEEGEKNNNHVHKEKEEDDA
TLRAQAAILLHDCIALLSSFSTTPTSPYPATLDNPTHLHYCALLELGRHF
ESCPSLLPTSSLASSFYRRAVALATERVEPLLLLGVARKREGGREEGINI
LREAVRKAKEREGARRSRRDEKKRRGQGVKEKKKQRRESEDKGKQEKEEE
EEEEEEEEEEVAREDDAGRQAMLELAMLLLQSAADGENGDGDEDGGGKVE
EMKQKKNSSISSSRSRSISHNEQEADSLLHTLSFTYRLSTSIWSYPLSFP
PPSRFPVLLPSRPPPFSTSPTASSLPPSLVRCAECFALPPPLFGRSMDIT
EKDVRISRI*
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Synonyms
Publications