NO23G01220.1, NO23G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01220.1
Unique NameNO23G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1139
Alignment locationchr23:445294..446432 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:445294..446432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01220NO23G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01220.1NO23G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01220.1.cds1NO23G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01220.1 ID=NO23G01220.1|Name=NO23G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
TTCAGCCCCTCCACCACCATATCCATAGGTTCCCAACGAAGCGACAATGT
TTACCAATCATGTTTGATAATATAAACGCCCGGCAACGCCAAGTCCAGTC
CCTCTTCCTCCAGGCGGTTTCCCTGCTCCATCCAGAAGAGGAGGACGACG
ACGAGGAGGGAGAGAAGAATAACAACCATGTCCACAAGGAGAAAGAAGAA
GACGATGCCACACTCAGAGCACAGGCCGCCATCCTCCTGCACGATTGCAT
TGCCCTTCTCTCATCCTTTTCTACCACCCCTACCTCCCCCTACCCCGCCA
CCCTCGACAATCCAACTCACCTCCATTACTGTGCCTTGCTTGAGCTCGGC
CGCCATTTTGAGTCCTGCCCTTCTCTTCTTCCCACGTCCTCCCTCGCTTC
CTCCTTTTATCGACGGGCTGTGGCCCTGGCGACTGAGAGAGTGGAGCCTT
TGTTGTTATTAGGCGTGGCCCGAAAGAGGGAGGGAGGAAGGGAGGAAGGG
ATAAATATTCTGAGAGAGGCGGTGCGCAAAGCGAAGGAAAGAGAAGGAGC
GAGAAGAAGCAGGAGGGATGAAAAGAAGAGAAGGGGACAGGGAGTGAAAG
AAAAGAAGAAGCAGAGGAGGGAGAGCGAAGACAAAGGTAAACAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCAGGGA
GGACGATGCTGGGCGACAAGCAATGTTAGAGCTGGCGATGCTTCTGTTAC
AGTCTGCTGCTGATGGCGAGAATGGGGACGGGGACGAGGATGGAGGAGGG
AAGGTGGAGGAAATGAAGCAGAAAAAGAACAGCAGCATCAGCAGCAGTCG
TAGCAGAAGCATTTCCCATAATGAACAAGAAGCAGACAGCCTCCTTCACA
CCCTCTCTTTCACTTACCGTCTTTCTACCTCCATTTGGTCTTACCCCCTC
TCCTTCCCTCCCCCCTCCCGCTTTCCCGTCCTCCTTCCCTCCCGTCCTCC
TCCTTTCTCCACCTCTCCGACGGCGTCCTCCCTCCCTCCCTCCTTGGTGA
GATGCGCCGAGTGTTTTGCCCTCCCTCCGCCCCTTTTTGGGAGGAGCATG
GATATTACAGAGAAGGATGTGCGTATTTCTCGTATTTGA
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protein sequence of NO23G01220.1

>NO23G01220.1-protein ID=NO23G01220.1-protein|Name=NO23G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MFDNINARQRQVQSLFLQAVSLLHPEEEDDDEEGEKNNNHVHKEKEEDDA
TLRAQAAILLHDCIALLSSFSTTPTSPYPATLDNPTHLHYCALLELGRHF
ESCPSLLPTSSLASSFYRRAVALATERVEPLLLLGVARKREGGREEGINI
LREAVRKAKEREGARRSRRDEKKRRGQGVKEKKKQRRESEDKGKQEKEEE
EEEEEEEEEEVAREDDAGRQAMLELAMLLLQSAADGENGDGDEDGGGKVE
EMKQKKNSSISSSRSRSISHNEQEADSLLHTLSFTYRLSTSIWSYPLSFP
PPSRFPVLLPSRPPPFSTSPTASSLPPSLVRCAECFALPPPLFGRSMDIT
EKDVRISRI*
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mRNA from alignment at chr23:445294..446432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01220.1 ID=NO23G01220.1|Name=NO23G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at chr23:445294..446432+ (Nannochloropsis oceanica)
TTCAGCCCCTCCACCACCATATCCATAGGTTCCCAACGAAGCGACAATGT
TTACCAATCATGTTTGATAATATAAACGCCCGGCAACGCCAAGTCCAGTC
CCTCTTCCTCCAGGCGGTTTCCCTGCTCCATCCAGAAGAGGAGGACGACG
ACGAGGAGGGAGAGAAGAATAACAACCATGTCCACAAGGAGAAAGAAGAA
GACGATGCCACACTCAGAGCACAGGCCGCCATCCTCCTGCACGATTGCAT
TGCCCTTCTCTCATCCTTTTCTACCACCCCTACCTCCCCCTACCCCGCCA
CCCTCGACAATCCAACTCACCTCCATTACTGTGCCTTGCTTGAGCTCGGC
CGCCATTTTGAGTCCTGCCCTTCTCTTCTTCCCACGTCCTCCCTCGCTTC
CTCCTTTTATCGACGGGCTGTGGCCCTGGCGACTGAGAGAGTGGAGCCTT
TGTTGTTATTAGGCGTGGCCCGAAAGAGGGAGGGAGGAAGGGAGGAAGGG
ATAAATATTCTGAGAGAGGCGGTGCGCAAAGCGAAGGAAAGAGAAGGAGC
GAGAAGAAGCAGGAGGGATGAAAAGAAGAGAAGGGGACAGGGAGTGAAAG
AAAAGAAGAAGCAGAGGAGGGAGAGCGAAGACAAAGGTAAACAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCAGGGA
GGACGATGCTGGGCGACAAGCAATGTTAGAGCTGGCGATGCTTCTGTTAC
AGTCTGCTGCTGATGGCGAGAATGGGGACGGGGACGAGGATGGAGGAGGG
AAGGTGGAGGAAATGAAGCAGAAAAAGAACAGCAGCATCAGCAGCAGTCG
TAGCAGAAGCATTTCCCATAATGAACAAGAAGCAGACAGCCTCCTTCACA
CCCTCTCTTTCACTTACCGTCTTTCTACCTCCATTTGGTCTTACCCCCTC
TCCTTCCCTCCCCCCTCCCGCTTTCCCGTCCTCCTTCCCTCCCGTCCTCC
TCCTTTCTCCACCTCTCCGACGGCGTCCTCCCTCCCTCCCTCCTTGGTGA
GATGCGCCGAGTGTTTTGCCCTCCCTCCGCCCCTTTTTGGGAGGAGCATG
GATATTACAGAGAAGGATGTGCGTATTTCTCGTATTTGA
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Coding sequence (CDS) from alignment at chr23:445294..446432+

>NO23G01220.1 ID=NO23G01220.1|Name=NO23G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr23:445294..446432+ (Nannochloropsis oceanica)
ATGTTTGATAATATAAACGCCCGGCAACGCCAAGTCCAGTCCCTCTTCCT
CCAGGCGGTTTCCCTGCTCCATCCAGAAGAGGAGGACGACGACGAGGAGG
GAGAGAAGAATAACAACCATGTCCACAAGGAGAAAGAAGAAGACGATGCC
ACACTCAGAGCACAGGCCGCCATCCTCCTGCACGATTGCATTGCCCTTCT
CTCATCCTTTTCTACCACCCCTACCTCCCCCTACCCCGCCACCCTCGACA
ATCCAACTCACCTCCATTACTGTGCCTTGCTTGAGCTCGGCCGCCATTTT
GAGTCCTGCCCTTCTCTTCTTCCCACGTCCTCCCTCGCTTCCTCCTTTTA
TCGACGGGCTGTGGCCCTGGCGACTGAGAGAGTGGAGCCTTTGTTGTTAT
TAGGCGTGGCCCGAAAGAGGGAGGGAGGAAGGGAGGAAGGGATAAATATT
CTGAGAGAGGCGGTGCGCAAAGCGAAGGAAAGAGAAGGAGCGAGAAGAAG
CAGGAGGGATGAAAAGAAGAGAAGGGGACAGGGAGTGAAAGAAAAGAAGA
AGCAGAGGAGGGAGAGCGAAGACAAAGGTAAACAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCAGGGAGGACGATGC
TGGGCGACAAGCAATGTTAGAGCTGGCGATGCTTCTGTTACAGTCTGCTG
CTGATGGCGAGAATGGGGACGGGGACGAGGATGGAGGAGGGAAGGTGGAG
GAAATGAAGCAGAAAAAGAACAGCAGCATCAGCAGCAGTCGTAGCAGAAG
CATTTCCCATAATGAACAAGAAGCAGACAGCCTCCTTCACACCCTCTCTT
TCACTTACCGTCTTTCTACCTCCATTTGGTCTTACCCCCTCTCCTTCCCT
CCCCCCTCCCGCTTTCCCGTCCTCCTTCCCTCCCGTCCTCCTCCTTTCTC
CACCTCTCCGACGGCGTCCTCCCTCCCTCCCTCCTTGGTGAGATGCGCCG
AGTGTTTTGCCCTCCCTCCGCCCCTTTTTGGGAGGAGCATGGATATTACA
GAGAAGGATGTGCGTATTTCTCGTATTTGA
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Synonyms
Publications