NO23G01060, NO23G01060 (gene) Nannochloropsis oceanica

Overview
NameNO23G01060
Unique NameNO23G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1655
Alignment locationchr23:391291..392945 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:391291..392945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025433DUF4168
Homology
BLAST of NO23G01060 vs. NCBI_GenBank
Match: EWM22934.1 (protein of unknown function DUF4168 [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 2.100e-72
Identity = 175/331 (52.87%), Postives = 205/331 (61.93%), Query Frame = 0
Query:   25 IRAS-SSKVKFVSLLANDVILDRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVNERLLSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWR 355
            +RA+ S+KVKFVSLLAND +LDRYAAAVAATEPLREDRD+ LR+NINP+ LWWVK TK N+L+ ++ G  AEA+++A TYHV QS +IIKSLGL+V+DFN ITRRLAHD  LR K  +                         XXXXXXXXXXXXXXX                                                                          PVPTNV+P R+ALFAKSLREIEALRAE NH+LKQEF+VDALP GATDPS+FP+LN+KVQ+LCL+FP+QAEEIA KNGFE +EFNSLL K + NPFFRWR
Sbjct:   39 VRATPSNKVKFVSLLANDAVLDRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-------------------------------------------------------------------------PVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWR 296          
BLAST of NO23G01060 vs. NCBI_GenBank
Match: EJK75698.1 (hypothetical protein THAOC_02571 [Thalassiosira oceanica])

HSP 1 Score: 117.9 bits (294), Expect = 6.800e-23
Identity = 94/325 (28.92%), Postives = 137/325 (42.15%), Query Frame = 0
Query:   45 DRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVNERLLSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVV------PQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAG--ATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKE 362
            DRY+AA+A TE LR  RD+ +       R       K N L T+       A K+A + +++QS K +K+LG+T + FN I R +  DP L+D+V +QAYLYR+ S VN   L  +P  D                                                                                           P    ++        RV LFA+S+ EIE LR++    LKQ   V+  P G   +DP+V P+L+ +V+ +C KFP+QAEEI  + G  + EFN +L + K NP FRWRV + +++
Sbjct:  128 DRYSAALAVTEGLRRVRDREITRAEEAKR-----RKKRNQLSTD----WETAKKRAESAYLLQSTKAVKALGMTAAQFNQIGREVISDPALKDRVSEQAYLYRVASTVN---LDKVPLLD------------------------------------------------------------------------------------------DPSSKKLLQSAEHKKHRVQLFARSIHEIEDLRSDQMEALKQSLQVERFPPGFDISDPNVQPLLHPEVRAVCEKFPVQAEEIVKRYGLGSDEFNRMLEETKGNPIFRWRVHKYVQK 350          
BLAST of NO23G01060 vs. NCBI_GenBank
Match: XP_002294294.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88649.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 114.4 bits (285), Expect = 7.500e-22
Identity = 91/321 (28.35%), Postives = 135/321 (42.06%), Query Frame = 0
Query:   45 DRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVN-ERL-LSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAG--ATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKE 362
            DRYAAA+A TE LR  RD  +   +  I+                     +A K+A +  ++Q+ K +K+LG+TV+ FN I R +  D  L+++V +QAYLYR+ S +N ER+ L S P    L                                                                                                  RV +FA+S+ EIE LRA+    L+Q   V+  P G   +DP+V P+L+ +V+ +C KFPLQAEEI  + G E+ EFN +L + K NP FRWRV++ +++
Sbjct:  183 DRYAAALAVTEGLRRVRDAEVERRMEEIKS-GDNXXXXXXXXXXXXXQIEQAKKRAESAFLMQNTKAVKALGMTVTQFNQIGREVLADNALKERVSEQAYLYRIASTINLERVPLLSDPSSKKLLQSHKR-------------------------------------------------------------------------------------------YRVQMFARSITEIEDLRADQMEALRQSLAVERFPPGFDLSDPNVQPLLHPEVRAVCEKFPLQAEEIVKRYGLESDEFNKMLEETKGNPIFRWRVQKYVEK 411          
BLAST of NO23G01060 vs. NCBI_GenBank
Match: XP_002176909.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51372.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 108.6 bits (270), Expect = 4.100e-20
Identity = 83/332 (25.00%), Postives = 141/332 (42.47%), Query Frame = 0
Query:   36 SLLAN-DVILDRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVN---ERLLSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGA--TDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKE 362
            SL +N ++  D+Y+A +AATE LR  RD+ L           V+A  G   D        EA K     +V  SG+++++LG+TV++FN + R+++ D +L++KV++QAYLYR+ + +N     L+      ++L                                                                                                  ++ LF +S+ EIE LR++    LK+  +VD  PA    +DP + P L+ KV+ +   FPLQAE+I  K+G ++ EFN +L    +NP FRW++++ +++
Sbjct:   71 SLFSNSELEYDKYSACLAATEGLRRIRDRSLAAE--------VQAAGGTGTDMK------EAEKHINAQYVQNSGRVLRALGMTVAEFNALGRQISQDEQLKEKVMEQAYLYRMAATINMDRANLIEDPASAELLQAFR--------------------------------------------------------------------------------------------KDKLHLFCESMSEIEQLRSDQIERLKRSLHVDKFPANVNISDPGLLPFLSPKVRAVVEAFPLQAEDIVKKHGLQSDEFNQMLQATHSNPIFRWKIQKEIRK 296          
BLAST of NO23G01060 vs. NCBI_GenBank
Match: CBJ33734.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.6 bits (200), Expect = 5.400e-12
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  263 PQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKEQGK 365
            P +  LFAKSLREIEALR+     L +E   + LP+G   P +  + + +++  C  FP+ AE I   NG E  EFN L A+++ N  +RW+V R +++  K
Sbjct:   97 PDKKMLFAKSLREIEALRSRQRRRLMKEVGSNDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKLEK 198          
The following BLAST results are available for this feature:
BLAST of NO23G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM22934.12.100e-7252.87protein of unknown function DUF4168 [Nannochlorops... [more]
EJK75698.16.800e-2328.92hypothetical protein THAOC_02571 [Thalassiosira oc... [more]
XP_002294294.17.500e-2228.35predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002176909.14.100e-2025.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ33734.15.400e-1239.22conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006367NSK006367Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01060.1NO23G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197183gene_8459Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100763g3gene7513Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01060.1NO23G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01060 ID=NO23G01060|Name=NO23G01060|organism=Nannochloropsis oceanica|type=gene|length=1655bp
ATGGTTAGACGGTCAGCCACCTCCTCCTCCCTCCTCCTCTTTTTCCTTCT
CCTTCCCATTTTCTCCGTCGTGATACGAGCAAGTTCGAGCAAGGTCAAAT
TTGTTTCCTTGTTGGCAAACGATGTAATCCTGGATAGGTACGCTGCAGCA
GTAGCAGCCACAGAGCCCCTGAGGGAGGACCGGGACAAAGTCTTGCGAGg
tgagtgaagtggaggtagaaatggggaggatgtagggagtatacacgtag
gtggatgtaatgagtggaacaagcaggctggcgcacaagcacatggcgca
caggcacatgcttgacaactttcctccctccctccttccccttattcctt
tctttaacaccgacagAGAACATAAACCCCATCCGACTATGGTGGGTCAA
GGCAACAAAAGGGAACTTGCTCGACACCAACCGCAGAGGTGCTCACGCCG
AAGCTGTAAAGAAGGCCTATACATATCACGTGGTGCAGTCGGGGAAGATA
ATCAAAAGCTTGGGCTTGACAGTGTCGGATTTCAACACCATCACCCGCCG
GCTTGCGCACGACCCCAAGCTCCGAGATAAGgtgagcacgtcatattttc
ctgtatcctgttcccccccttgttgatatcgctgaacatttcacctcaca
atacaaccctttctatggtccttcgttccctccctccctccttaccctct
ttctagGTCTTAAAGCAGGCATATTTGTACCGGTTGGAAAGCCGAGTCAA
TGAGCGgtaagcggcgaaggggggaaggagggagggagtaagggacaggg
agacggaagttttgatgtcttttttttgtgttgtttttcgccctgcacat
tatgcttctcacgctttctcctcccttctcccctacctcgcagGCTTCTT
TCCTCCATCCCCGAAGAGGACATGCTCGAGGCCCTCGCTAGCAGCAGCAG
CAGCAGCAGCAGTAGCTTCTTTTCTCCCTCCCATGCACCTGTCCGTGTCT
CCTCGTCTTCCCCGAGCAGCAGCAGCGATGCGGAGGGAGGAGCAGTAGGG
AGGAGTAGCAGTGGCAGCAGTGGTAGCTTCAGTCTCTTCCATCCTACCTC
CTGGTATAGTCGCAGAAGCAATAGCATGCAGCCCACAGCAGCAGCAGCTG
CTGTAGCCGCAGTAGCAGCAGCTGAAGAGGAGGAGAATGAGTCTCCCGTG
CCTACCAATGTGGTGCCCCAGCGGGTGGCCCTCTTCGCTAAAAGCTTAAG
GGAAATCGAAGCCTTGCGCGCGGAGCATAATCACATGgtaagcattcatt
tgctgttttgcgtcagtcttcatttctcctcgccattctttgaccgagat
ttcctcatcctctggtaaatctcacacacccacccacttgccccccctcc
ctccctccctcctcccagCTTAAACAAGAATTCAATGTAGACGCCTTACC
AGCAGGCGCCACGGACCCCTCCGTCTTCCCCATGCTTAACAGCAAGGTTC
AAAATTTGTGTCTCAAATTCCCTTTGCAAGCCGAAGAAATCGCCCACAAA
AATGGGTTTGAAGCCAGTGAATTCAACTCGTTGCTAGCCAAAGCGAAAAC
GAACCCATTTTTCCGATGGCGCGTGGAAAGAATGATGAAGGAGCAGGGGA
AGTAG
back to top

protein sequence of NO23G01060.1

>NO23G01060.1-protein ID=NO23G01060.1-protein|Name=NO23G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MVRRSATSSSLLLFFLLLPIFSVVIRASSSKVKFVSLLANDVILDRYAAA
VAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKA
YTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLES
RVNERLLSSIPEEDMLEALASSSSSSSSSFFSPSHAPVRVSSSSPSSSSD
AEGGAVGRSSSGSSGSFSLFHPTSWYSRRSNSMQPTAAAAAVAAVAAAEE
EENESPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGA
TDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPF
FRWRVERMMKEQGK*
back to top
Synonyms
Publications