NO23G01060, NO23G01060 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO23G01060 vs. NCBI_GenBank
Match: EWM22934.1 (protein of unknown function DUF4168 [Nannochloropsis gaditana]) HSP 1 Score: 282.3 bits (721), Expect = 2.100e-72 Identity = 175/331 (52.87%), Postives = 205/331 (61.93%), Query Frame = 0 Query: 25 IRAS-SSKVKFVSLLANDVILDRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVNERLLSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWR 355 +RA+ S+KVKFVSLLAND +LDRYAAAVAATEPLREDRD+ LR+NINP+ LWWVK TK N+L+ ++ G AEA+++A TYHV QS +IIKSLGL+V+DFN ITRRLAHD LR K + XXXXXXXXXXXXXXX PVPTNV+P R+ALFAKSLREIEALRAE NH+LKQEF+VDALP GATDPS+FP+LN+KVQ+LCL+FP+QAEEIA KNGFE +EFNSLL K + NPFFRWR Sbjct: 39 VRATPSNKVKFVSLLANDAVLDRYAAAVAATEPLREDRDRALRDNINPLHLWWVKTTKKNVLEAHKSGPRAEAIRRACTYHVTQSSRIIKSLGLSVADFNLITRRLAHDAVLRKKASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-------------------------------------------------------------------------PVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWR 296
BLAST of NO23G01060 vs. NCBI_GenBank
Match: EJK75698.1 (hypothetical protein THAOC_02571 [Thalassiosira oceanica]) HSP 1 Score: 117.9 bits (294), Expect = 6.800e-23 Identity = 94/325 (28.92%), Postives = 137/325 (42.15%), Query Frame = 0 Query: 45 DRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVNERLLSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVV------PQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAG--ATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKE 362 DRY+AA+A TE LR RD+ + R K N L T+ A K+A + +++QS K +K+LG+T + FN I R + DP L+D+V +QAYLYR+ S VN L +P D P ++ RV LFA+S+ EIE LR++ LKQ V+ P G +DP+V P+L+ +V+ +C KFP+QAEEI + G + EFN +L + K NP FRWRV + +++ Sbjct: 128 DRYSAALAVTEGLRRVRDREITRAEEAKR-----RKKRNQLSTD----WETAKKRAESAYLLQSTKAVKALGMTAAQFNQIGREVISDPALKDRVSEQAYLYRVASTVN---LDKVPLLD------------------------------------------------------------------------------------------DPSSKKLLQSAEHKKHRVQLFARSIHEIEDLRSDQMEALKQSLQVERFPPGFDISDPNVQPLLHPEVRAVCEKFPVQAEEIVKRYGLGSDEFNRMLEETKGNPIFRWRVHKYVQK 350
BLAST of NO23G01060 vs. NCBI_GenBank
Match: XP_002294294.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88649.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 114.4 bits (285), Expect = 7.500e-22 Identity = 91/321 (28.35%), Postives = 135/321 (42.06%), Query Frame = 0 Query: 45 DRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVN-ERL-LSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAG--ATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKE 362 DRYAAA+A TE LR RD + + I+ +A K+A + ++Q+ K +K+LG+TV+ FN I R + D L+++V +QAYLYR+ S +N ER+ L S P L RV +FA+S+ EIE LRA+ L+Q V+ P G +DP+V P+L+ +V+ +C KFPLQAEEI + G E+ EFN +L + K NP FRWRV++ +++ Sbjct: 183 DRYAAALAVTEGLRRVRDAEVERRMEEIKS-GDNXXXXXXXXXXXXXQIEQAKKRAESAFLMQNTKAVKALGMTVTQFNQIGREVLADNALKERVSEQAYLYRIASTINLERVPLLSDPSSKKLLQSHKR-------------------------------------------------------------------------------------------YRVQMFARSITEIEDLRADQMEALRQSLAVERFPPGFDLSDPNVQPLLHPEVRAVCEKFPLQAEEIVKRYGLESDEFNKMLEETKGNPIFRWRVQKYVEK 411
BLAST of NO23G01060 vs. NCBI_GenBank
Match: XP_002176909.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51372.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 108.6 bits (270), Expect = 4.100e-20 Identity = 83/332 (25.00%), Postives = 141/332 (42.47%), Query Frame = 0 Query: 36 SLLAN-DVILDRYAAAVAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKAYTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLESRVN---ERLLSSIPEEDMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGA--TDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKE 362 SL +N ++ D+Y+A +AATE LR RD+ L V+A G D EA K +V SG+++++LG+TV++FN + R+++ D +L++KV++QAYLYR+ + +N L+ ++L ++ LF +S+ EIE LR++ LK+ +VD PA +DP + P L+ KV+ + FPLQAE+I K+G ++ EFN +L +NP FRW++++ +++ Sbjct: 71 SLFSNSELEYDKYSACLAATEGLRRIRDRSLAAE--------VQAAGGTGTDMK------EAEKHINAQYVQNSGRVLRALGMTVAEFNALGRQISQDEQLKEKVMEQAYLYRMAATINMDRANLIEDPASAELLQAFR--------------------------------------------------------------------------------------------KDKLHLFCESMSEIEQLRSDQIERLKRSLHVDKFPANVNISDPGLLPFLSPKVRAVVEAFPLQAEDIVKKHGLQSDEFNQMLQATHSNPIFRWKIQKEIRK 296
BLAST of NO23G01060 vs. NCBI_GenBank
Match: CBJ33734.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 81.6 bits (200), Expect = 5.400e-12 Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 0 Query: 263 PQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWRVERMMKEQGK 365 P + LFAKSLREIEALR+ L +E + LP+G P + + + +++ C FP+ AE I NG E EFN L A+++ N +RW+V R +++ K Sbjct: 97 PDKKMLFAKSLREIEALRSRQRRRLMKEVGSNDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKLEK 198 The following BLAST results are available for this feature:
BLAST of NO23G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G01060 ID=NO23G01060|Name=NO23G01060|organism=Nannochloropsis oceanica|type=gene|length=1655bpback to top protein sequence of NO23G01060.1 >NO23G01060.1-protein ID=NO23G01060.1-protein|Name=NO23G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bpback to top Synonyms
Publications
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