NO23G01060.1, NO23G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01060.1
Unique NameNO23G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr23:391291..392945 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:391291..392945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01060.1 vs.
Match: EWM22934.1 (protein of unknown function DUF4168 [Nannochloropsis gaditana])

HSP 1 Score: 175.6 bits (444), Expect = 2.700e-40
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 0 
Query:  250 EEENESPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGATDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPFFRWR 355
            EEE E PVPTNV+P R+ALFAKSLREIEALRAE NH+LKQEF+VDALP GATDPS+FP+LN+KVQ+LCL+FP+QAEEIA KNGFE +EFNSLL K + NPFFRWR
Sbjct:  192 EEEQELPVPTNVLPHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWR 296
The following BLAST results are available for this feature:
BLAST of NO23G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22934.12.700e-4079.05protein of unknown function DUF4168 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01060NO23G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01060.1NO23G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01060.1.cds1NO23G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01060.1.cds2NO23G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01060.1.cds3NO23G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01060.1.cds4NO23G01060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01060.1.cds5NO23G01060.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01060.1 ID=NO23G01060.1|Name=NO23G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGGTTAGACGGTCAGCCACCTCCTCCTCCCTCCTCCTCTTTTTCCTTCT
CCTTCCCATTTTCTCCGTCGTGATACGAGCAAGTTCGAGCAAGGTCAAAT
TTGTTTCCTTGTTGGCAAACGATGTAATCCTGGATAGGTACGCTGCAGCA
GTAGCAGCCACAGAGCCCCTGAGGGAGGACCGGGACAAAGTCTTGCGAGA
GAACATAAACCCCATCCGACTATGGTGGGTCAAGGCAACAAAAGGGAACT
TGCTCGACACCAACCGCAGAGGTGCTCACGCCGAAGCTGTAAAGAAGGCC
TATACATATCACGTGGTGCAGTCGGGGAAGATAATCAAAAGCTTGGGCTT
GACAGTGTCGGATTTCAACACCATCACCCGCCGGCTTGCGCACGACCCCA
AGCTCCGAGATAAGGTCTTAAAGCAGGCATATTTGTACCGGTTGGAAAGC
CGAGTCAATGAGCGGCTTCTTTCCTCCATCCCCGAAGAGGACATGCTCGA
GGCCCTCGCTAGCAGCAGCAGCAGCAGCAGCAGTAGCTTCTTTTCTCCCT
CCCATGCACCTGTCCGTGTCTCCTCGTCTTCCCCGAGCAGCAGCAGCGAT
GCGGAGGGAGGAGCAGTAGGGAGGAGTAGCAGTGGCAGCAGTGGTAGCTT
CAGTCTCTTCCATCCTACCTCCTGGTATAGTCGCAGAAGCAATAGCATGC
AGCCCACAGCAGCAGCAGCTGCTGTAGCCGCAGTAGCAGCAGCTGAAGAG
GAGGAGAATGAGTCTCCCGTGCCTACCAATGTGGTGCCCCAGCGGGTGGC
CCTCTTCGCTAAAAGCTTAAGGGAAATCGAAGCCTTGCGCGCGGAGCATA
ATCACATGCTTAAACAAGAATTCAATGTAGACGCCTTACCAGCAGGCGCC
ACGGACCCCTCCGTCTTCCCCATGCTTAACAGCAAGGTTCAAAATTTGTG
TCTCAAATTCCCTTTGCAAGCCGAAGAAATCGCCCACAAAAATGGGTTTG
AAGCCAGTGAATTCAACTCGTTGCTAGCCAAAGCGAAAACGAACCCATTT
TTCCGATGGCGCGTGGAAAGAATGATGAAGGAGCAGGGGAAGTAG
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protein sequence of NO23G01060.1

>NO23G01060.1-protein ID=NO23G01060.1-protein|Name=NO23G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MVRRSATSSSLLLFFLLLPIFSVVIRASSSKVKFVSLLANDVILDRYAAA
VAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKA
YTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVLKQAYLYRLES
RVNERLLSSIPEEDMLEALASSSSSSSSSFFSPSHAPVRVSSSSPSSSSD
AEGGAVGRSSSGSSGSFSLFHPTSWYSRRSNSMQPTAAAAAVAAVAAAEE
EENESPVPTNVVPQRVALFAKSLREIEALRAEHNHMLKQEFNVDALPAGA
TDPSVFPMLNSKVQNLCLKFPLQAEEIAHKNGFEASEFNSLLAKAKTNPF
FRWRVERMMKEQGK*
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mRNA from alignment at chr23:391291..392945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01060.1 ID=NO23G01060.1|Name=NO23G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp|location=Sequence derived from alignment at chr23:391291..392945+ (Nannochloropsis oceanica)
ATGGTTAGACGGTCAGCCACCTCCTCCTCCCTCCTCCTCTTTTTCCTTCT
CCTTCCCATTTTCTCCGTCGTGATACGAGCAAGTTCGAGCAAGGTCAAAT
TTGTTTCCTTGTTGGCAAACGATGTAATCCTGGATAGGTACGCTGCAGCA
GTAGCAGCCACAGAGCCCCTGAGGGAGGACCGGGACAAAGTCTTGCGAGG
TGAGTGAAGTGGAGGTAGAAATGGGGAGGATGTAGGGAGTATACACGTAG
GTGGATGTAATGAGTGGAACAAGCAGGCTGGCGCACAAGCACATGGCGCA
CAGGCACATGCTTGACAACTTTCCTCCCTCCCTCCTTCCCCTTATTCCTT
TCTTTAACACCGACAGAGAACATAAACCCCATCCGACTATGGTGGGTCAA
GGCAACAAAAGGGAACTTGCTCGACACCAACCGCAGAGGTGCTCACGCCG
AAGCTGTAAAGAAGGCCTATACATATCACGTGGTGCAGTCGGGGAAGATA
ATCAAAAGCTTGGGCTTGACAGTGTCGGATTTCAACACCATCACCCGCCG
GCTTGCGCACGACCCCAAGCTCCGAGATAAGGTGAGCACGTCATATTTTC
CTGTATCCTGTTCCCCCCCTTGTTGATATCGCTGAACATTTCACCTCACA
ATACAACCCTTTCTATGGTCCTTCGTTCCCTCCCTCCCTCCTTACCCTCT
TTCTAGGTCTTAAAGCAGGCATATTTGTACCGGTTGGAAAGCCGAGTCAA
TGAGCGGTAAGCGGCGAAGGGGGGAAGGAGGGAGGGAGTAAGGGACAGGG
AGACGGAAGTTTTGATGTCTTTTTTTTGTGTTGTTTTTCGCCCTGCACAT
TATGCTTCTCACGCTTTCTCCTCCCTTCTCCCCTACCTCGCAGGCTTCTT
TCCTCCATCCCCGAAGAGGACATGCTCGAGGCCCTCGCTAGCAGCAGCAG
CAGCAGCAGCAGTAGCTTCTTTTCTCCCTCCCATGCACCTGTCCGTGTCT
CCTCGTCTTCCCCGAGCAGCAGCAGCGATGCGGAGGGAGGAGCAGTAGGG
AGGAGTAGCAGTGGCAGCAGTGGTAGCTTCAGTCTCTTCCATCCTACCTC
CTGGTATAGTCGCAGAAGCAATAGCATGCAGCCCACAGCAGCAGCAGCTG
CTGTAGCCGCAGTAGCAGCAGCTGAAGAGGAGGAGAATGAGTCTCCCGTG
CCTACCAATGTGGTGCCCCAGCGGGTGGCCCTCTTCGCTAAAAGCTTAAG
GGAAATCGAAGCCTTGCGCGCGGAGCATAATCACATGGTAAGCATTCATT
TGCTGTTTTGCGTCAGTCTTCATTTCTCCTCGCCATTCTTTGACCGAGAT
TTCCTCATCCTCTGGTAAATCTCACACACCCACCCACTTGCCCCCCCTCC
CTCCCTCCCTCCTCCCAGCTTAAACAAGAATTCAATGTAGACGCCTTACC
AGCAGGCGCCACGGACCCCTCCGTCTTCCCCATGCTTAACAGCAAGGTTC
AAAATTTGTGTCTCAAATTCCCTTTGCAAGCCGAAGAAATCGCCCACAAA
AATGGGTTTGAAGCCAGTGAATTCAACTCGTTGCTAGCCAAAGCGAAAAC
GAACCCATTTTTCCGATGGCGCGTGGAAAGAATGATGAAGGAGCAGGGGA
AGTAG
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Coding sequence (CDS) from alignment at chr23:391291..392945+

>NO23G01060.1 ID=NO23G01060.1|Name=NO23G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr23:391291..392945+ (Nannochloropsis oceanica)
ATGGTTAGACGGTCAGCCACCTCCTCCTCCCTCCTCCTCTTTTTCCTTCT
CCTTCCCATTTTCTCCGTCGTGATACGAGCAAGTTCGAGCAAGGTCAAAT
TTGTTTCCTTGTTGGCAAACGATGTAATCCTGGATAGGTACGCTGCAGCA
GTAGCAGCCACAGAGCCCCTGAGGGAGGACCGGGACAAAGTCTTGCGAGA
GAACATAAACCCCATCCGACTATGGTGGGTCAAGGCAACAAAAGGGAACT
TGCTCGACACCAACCGCAGAGGTGCTCACGCCGAAGCTGTAAAGAAGGCC
TATACATATCACGTGGTGCAGTCGGGGAAGATAATCAAAAGCTTGGGCTT
GACAGTGTCGGATTTCAACACCATCACCCGCCGGCTTGCGCACGACCCCA
AGCTCCGAGATAAGGTCTTAAAGCAGGCATATTTGTACCGGTTGGAAAGC
CGAGTCAATGAGCGGCTTCTTTCCTCCATCCCCGAAGAGGACATGCTCGA
GGCCCTCGCTAGCAGCAGCAGCAGCAGCAGCAGTAGCTTCTTTTCTCCCT
CCCATGCACCTGTCCGTGTCTCCTCGTCTTCCCCGAGCAGCAGCAGCGAT
GCGGAGGGAGGAGCAGTAGGGAGGAGTAGCAGTGGCAGCAGTGGTAGCTT
CAGTCTCTTCCATCCTACCTCCTGGTATAGTCGCAGAAGCAATAGCATGC
AGCCCACAGCAGCAGCAGCTGCTGTAGCCGCAGTAGCAGCAGCTGAAGAG
GAGGAGAATGAGTCTCCCGTGCCTACCAATGTGGTGCCCCAGCGGGTGGC
CCTCTTCGCTAAAAGCTTAAGGGAAATCGAAGCCTTGCGCGCGGAGCATA
ATCACATGCTTAAACAAGAATTCAATGTAGACGCCTTACCAGCAGGCGCC
ACGGACCCCTCCGTCTTCCCCATGCTTAACAGCAAGGTTCAAAATTTGTG
TCTCAAATTCCCTTTGCAAGCCGAAGAAATCGCCCACAAAAATGGGTTTG
AAGCCAGTGAATTCAACTCGTTGCTAGCCAAAGCGAAAACGAACCCATTT
TTCCGATGGCGCGTGGAAAGAATGATGAAGGAGCAGGGGAAGTAG
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Synonyms
Publications