NO23G00930, NO23G00930 (gene) Nannochloropsis oceanica

Overview
NameNO23G00930
Unique NameNO23G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr23:352511..353953 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:352511..353953 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G00930 vs. NCBI_GenBank
Match: EWM22946.1 (hypothetical protein Naga_100184g3 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 4.800e-11
Identity = 62/167 (37.13%), Postives = 75/167 (44.91%), Query Frame = 0 
Query:   12 VICTAPHGAGGRWRDPHLVSAPSSFTADASSGPSTTTTALHNGAGASSLPPSPSLMLGVDGTLVVSEWPVVSATAGSVDVFPLSRAGLKPRSVDSDXXXXXXXXXXXXXXXXXXXXXXXXXEFPPGPALFCRTRAVLVDLEEQGGRDGENGEEEEPHPLSPINFSSS 179
            ++  APHGAG R R+PHLV  PS   A  +     T        GA   PPS SL L +D  LV+ +WP V    G+VDVFPL +AG                                    P GPALF RT AVLV  EE GG + +   EE   PLSP+   S+
Sbjct:   19 IVRPAPHGAGMRVREPHLVPIPSRGEARVNDLHRPTAR-----CGAVPPPPSLSLTLALDAVLVLPQWPRVLPHEGAVDVFPLPQAG---------------TALVEGMEEGLEEKDEEDMLLPVGPALFRRTCAVLVAREEGGGMEEDGELEEGRQPLSPVRRDSN 165
The following BLAST results are available for this feature:
BLAST of NO23G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22946.14.800e-1137.13hypothetical protein Naga_100184g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006346NSK006346Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00930.1NO23G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602065gene_8445Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100184g3gene7502Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00930.1NO23G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00930 ID=NO23G00930|Name=NO23G00930|organism=Nannochloropsis oceanica|type=gene|length=1443bp
ATGAATTCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGAT
GCTGGGCGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTG
CTACAGCAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAA
CCAAGGAGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGA
AGGAGAGTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAAT
TTCCTCCGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGAT
CTAGAGGAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACC
CCATCCATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCC
CCCTGTCCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGA
CTAACAGGAGTAGCAAAGCGAAAGgtgtgtgtaacgtcaaaggctcaaaa
cggagaaagagaaaggaagatggaaaggatgtgatttttttttcaatttt
aaaaccatgcagaaacgtgaggaagtaagagcattgctcagAGATTTGCA
TTTAAGCTGTGTTTGTGCATGTACGGGTCTGTGATTTTGGGTGCCGAAGC
CAGGGAGAAGAGgtaagcaagaagaaggcgaggatacagggtgagagaga
aggagagggagaaggaggggaagagaaggaaaaggacgggaacaagagga
ggactgaaaagaaggagaagaggaagatggtttacatgtacaaacaatag
ggggggggaataccaatgaactagcagGCATGGATGGAGTCGAGAGACGG
TGGCCGAGGAGTCTATATTTGTTTCCTCACTGACTGTGAGACCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTAA
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protein sequence of NO23G00930.1

>NO23G00930.1-protein ID=NO23G00930.1-protein|Name=NO23G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MNSYARTSPSFVICTAPHGAGGRWRDPHLVSAPSSFTADASSGPSTTTTA
LHNGAGASSLPPSPSLMLGVDGTLVVSEWPVVSATAGSVDVFPLSRAGLK
PRSVDSDQDGEGEEVSEGELMTQEEEKDENEMEFPPGPALFCRTRAVLVD
LEEQGGRDGENGEEEEPHPLSPINFSSSPLPHFPLSKHSSLQPPAVGARR
LTGVAKRKRFAFKLCLCMYGSVILGAEAREKRHGWSRETVAEESIFVSSL
TVRPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSF*
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Synonyms
Publications